Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G65580 Arabidopsis lyrata HOM05D006420 ORTHO05D008009 1.1e-122 443.4 222 100.0
AT1G55000 Arabidopsis thaliana HOM05D006420 ORTHO05D008009 2.3e-117 425.6 222 95.9
Carub.0002s0818 Capsella rubella HOM05D006420 ORTHO05D008009 1.6e-115 419.5 222 95.0
CARHR287540 Cardamine hirsuta HOM05D006420 ORTHO05D008009 2.9e-112 408.7 222 91.0
SpUn0004_0090 Schrenkiella parvula HOM05D006420 ORTHO05D008009 4.2e-111 404.8 222 91.0
Thhalv10023646m.g Eutrema salsugineum HOM05D006420 ORTHO05D008009 8.2e-107 390.6 222 88.7
BcaC06g31763 Brassica carinata HOM05D006420 ORTHO05D008009 2.4e-106 389.0 222 87.8
A03p68650 Brassica napus HOM05D006420 ORTHO05D008009 1.3e-104 383.3 222 86.0
BraSC39t46193Z Brassica rapa HOM05D006420 ORTHO05D008009 1.3e-104 383.3 222 86.0
BcaC02g10755 Brassica carinata HOM05D006420 ORTHO05D008009 5.0e-104 381.3 222 86.0
C04p25420 Brassica napus HOM05D006420 ORTHO05D008009 5.0e-104 381.3 222 86.0
BolC4t24060H Brassica oleracea HOM05D006420 ORTHO05D008009 5.0e-104 381.3 222 86.0
Aa31LG2G11700 Aethionema arabicum HOM05D006774 ORTHO05D008411 3.9e-101 371.7 222 85.1
THA.LOC104820863 Tarenaya hassleriana HOM05D006420 ORTHO05D008009 1.2e-97 360.1 219 81.7
Thecc.05G302400 Theobroma cacao HOM05D006420 ORTHO05D008009 3.8e-88 328.6 219 73.1
COL.COLO4_13456 Corchorus olitorius HOM05D006420 ORTHO05D008009 5.0e-88 328.2 219 71.7
Manes.08G120400 Manihot esculenta HOM05D006420 ORTHO05D008009 1.9e-87 326.2 223 70.4
Cpa.g.sc48.61 Carica papaya HOM05D006420 ORTHO05D008009 5.5e-87 324.7 219 74.4
Gohir.D08G227700 Gossypium hirsutum HOM05D006420 ORTHO05D008009 1.0e-85 320.5 219 71.2
Gorai.004G241900 Gossypium raimondii HOM05D006420 ORTHO05D008009 1.0e-85 320.5 219 71.2
Gohir.A08G210900 Gossypium hirsutum HOM05D006420 ORTHO05D008009 3.0e-85 318.9 219 70.3
Cfa006594 Carpinus fangiana HOM05D006420 ORTHO05D008009 6.7e-85 317.8 221 70.6
Duzib177G0348 Durio zibethinus HOM05D006420 ORTHO05D008009 6.7e-85 317.8 219 70.8
PGR083G0891 Punica granatum HOM05D006420 ORTHO05D008009 1.1e-84 317.0 219 69.9
Duzib106G1877 Durio zibethinus HOM05D006420 ORTHO05D008009 1.5e-84 316.6 219 71.2
Cfa006595 Carpinus fangiana HOM05D006420 ORTHO05D008009 4.8e-83 311.6 222 68.0
RhsimUnG0226900 Rhododendron simsii HOM05D006420 ORTHO05D008009 6.3e-83 311.2 222 67.6
CiPaw.07G020700 Carya illinoinensis HOM05D006420 ORTHO05D008009 9.1e-82 307.4 221 66.5
GSVIVG01000081001 Vitis vinifera HOM05D006420 ORTHO05D008009 9.1e-82 307.4 223 68.2
Prupe.6G324800 Prunus persica HOM05D006420 ORTHO05D008009 4.5e-81 305.1 222 67.1
MD12G1218500 Malus domestica HOM05D006420 ORTHO05D008009 7.7e-81 304.3 219 67.1
Hund21694 Selenicereus undatus HOM05D006420 ORTHO05D008009 1.7e-80 303.1 219 67.6
EL10Ac4g09358 Beta vulgaris HOM05D006420 ORTHO05D008009 2.2e-80 302.8 219 66.2
vmacro05011 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 2.9e-80 302.4 220 65.0
Sc06g0003280 Simmondsia chinensis HOM05D006420 ORTHO05D008009 3.8e-80 302.0 220 67.7
Potri.013G021600 Populus trichocarpa HOM05D006420 ORTHO05D008009 6.5e-80 301.2 219 66.7
MD04G1204800 Malus domestica HOM05D006420 ORTHO05D008009 8.5e-80 300.8 219 67.1
Ciclev10002177m.g Citrus clementina HOM05D006420 ORTHO05D008009 1.1e-79 300.4 219 68.0
RcHm_v2.0_Chr3g0454981 Rosa chinensis HOM05D006420 ORTHO05D008009 1.9e-79 299.7 222 67.1
FvH4_6g06020 Fragaria vesca HOM05D006420 ORTHO05D008009 2.5e-79 299.3 220 66.4
FAN14G2531 Fragaria x ananassa HOM05D006420 ORTHO05D008009 2.5e-79 299.3 220 66.4
Atru.chr2.393 Acer truncatum HOM05D006420 ORTHO05D008009 5.5e-79 298.1 221 66.1
FAN02G2504 Fragaria x ananassa HOM05D006420 ORTHO05D008009 9.4e-79 297.4 222 66.2
FAN05G3282 Fragaria x ananassa HOM05D006420 ORTHO05D008009 9.4e-79 297.4 220 66.8
Hma1.2p1_0928F.1_g237740 Hydrangea macrophylla HOM05D006420 ORTHO05D008009 1.2e-78 297.0 219 65.3
FAN09G3808 Fragaria x ananassa HOM05D006420 ORTHO05D008009 1.6e-78 296.6 220 65.0
CAN.G1034.41 Capsicum annuum HOM05D006420 ORTHO05D008009 4.7e-78 295.0 223 66.8
AUR62000819 Chenopodium quinoa HOM05D006420 ORTHO05D008009 8.0e-78 294.3 219 65.8
Lsat_1_v5_gn_9_123421 Lactuca sativa HOM05D006420 ORTHO05D008009 1.8e-77 293.1 216 65.3
Lj9A85G78 Lonicera japonica HOM05D006420 ORTHO05D008009 2.3e-77 292.7 223 64.1
Lj9A86G16 Lonicera japonica HOM05D006420 ORTHO05D008009 2.3e-77 292.7 223 64.1
Actinidia05697 Actinidia chinensis HOM05D006420 ORTHO05D008009 4.0e-77 292.0 221 63.3
QL03p007116 Quercus lobata HOM05D006420 ORTHO05D008009 4.0e-77 292.0 227 66.1
Ah.04g160290 Amaranthus hybridus HOM05D006420 ORTHO05D008009 5.2e-77 291.6 215 65.6
FAN05G1000 Fragaria x ananassa HOM05D006420 ORTHO05D008009 6.7e-77 291.2 245 61.2
Sabra13G0024000 Salix brachista HOM05D006420 ORTHO05D008009 2.6e-76 289.3 221 63.8
Nn4g26277 Nelumbo nucifera HOM05D006420 ORTHO05D008009 4.4e-76 288.5 221 62.4
MSTRG.5100 Avicennia marina HOM05D006420 ORTHO05D008009 5.7e-76 288.1 217 61.8
CANSAT54G1557 Cannabis sativa HOM05D006420 ORTHO05D008009 7.5e-76 287.7 225 63.6
Peaxi162Scf00037g00513 Petunia axillaris HOM05D006420 ORTHO05D008009 7.5e-76 287.7 223 64.1
AUR62005152 Chenopodium quinoa HOM05D006420 ORTHO05D008009 1.7e-75 286.6 229 63.3
Sed0005627 Sechium edule HOM05D006420 ORTHO05D008009 1.7e-75 286.6 220 62.3
Solyc01g099130.3 Solanum lycopersicum HOM05D006420 ORTHO05D008009 1.7e-75 286.6 223 64.6
Sopen01g042690 Solanum pennellii HOM05D006420 ORTHO05D008009 1.7e-75 286.6 223 64.6
PGSC0003DMG400024687 Solanum tuberosum HOM05D006420 ORTHO05D008009 1.7e-75 286.6 223 64.6
Dinv23938 Davidia involucrata HOM05D006420 ORTHO05D008009 2.8e-75 285.8 219 63.5
Aqoxy5G00493 Aquilegia oxysepala HOM05D006420 ORTHO05D008009 4.8e-75 285.0 219 61.6
Lalb_Chr21g0310681 Lupinus albus HOM05D006420 ORTHO05D008009 4.8e-75 285.0 218 64.2
Nitab4.5_0000137g0140 Nicotiana tabacum HOM05D006420 ORTHO05D008009 6.3e-75 284.6 223 62.8
TPR.G6113 Trifolium pratense HOM05D006420 ORTHO05D008009 8.2e-75 284.3 219 63.5
Medtr1g082950 Medicago truncatula HOM05D006420 ORTHO05D008009 1.4e-74 283.5 218 65.1
Ca_10114_v3 Cicer arietinum L. HOM05D006420 ORTHO05D008009 1.8e-74 283.1 218 63.8
Oeu010909.1 Olea europaea HOM05D006420 ORTHO05D008009 1.8e-74 283.1 218 63.3
TAR636G1821 Trochodendron aralioides HOM05D006420 ORTHO05D008009 3.1e-74 282.3 217 62.7
CsaV3_2G005340 Cucumis sativus L. HOM05D006420 ORTHO05D008009 4.1e-74 282.0 220 60.9
TWI56G0424 Tripterygium wilfordii HOM05D006420 ORTHO05D008009 5.3e-74 281.6 220 62.3
TAR365G0270 Trochodendron aralioides HOM05D006420 ORTHO05D008009 9.1e-74 280.8 217 61.8
Cc02_g33350 Coffea canephora HOM05D006420 ORTHO05D008009 1.2e-73 280.4 219 62.6
Lj5g0015213 Lotus japonicus HOM05D006420 ORTHO05D008009 1.6e-73 280.0 218 63.3
Psat6g150480 Pisum sativum HOM05D006420 ORTHO05D008009 1.6e-73 280.0 218 62.8
ClCG02G015760 Citrullus lanatus HOM05D006420 ORTHO05D008009 2.0e-73 279.6 220 60.5
PSO210G7816 Papaver somniferum HOM05D006420 ORTHO05D008009 2.0e-73 279.6 220 61.4
Migut.N01987 Erythranthe guttata HOM05D006420 ORTHO05D008009 2.7e-73 279.3 221 61.1
Migut.N02012 Erythranthe guttata HOM05D006420 ORTHO05D008009 2.7e-73 279.3 221 61.1
DCAR_029409 Daucus carota HOM05D006420 ORTHO05D008009 5.9e-73 278.1 221 61.1
CSS0034260 Camellia sinensis var. sinensis HOM05D006420 ORTHO05D008009 1.0e-72 277.3 221 61.5
Glyma.10G154000 Glycine max HOM05D006420 ORTHO05D008009 1.3e-72 276.9 218 62.8
arahy.Tifrunner.gnm1.ann1.GHU2GX Arachis hypogaea HOM05D006420 ORTHO05D008009 1.7e-72 276.6 216 63.9
Nn1g02269 Nelumbo nucifera HOM05D006420 ORTHO05D008009 1.7e-72 276.6 219 62.6
Glyma.20G234300 Glycine max HOM05D006420 ORTHO05D008009 2.9e-72 275.8 218 63.3
arahy.Tifrunner.gnm1.ann1.7ESY4D Arachis hypogaea HOM05D006420 ORTHO05D008009 3.8e-72 275.4 216 63.9
CSS0037657 Camellia sinensis var. sinensis HOM05D006420 ORTHO05D008009 6.5e-72 274.6 221 61.1
Haze_04190 Corylus avellana HOM05D006420 ORTHO05D008009 4.2e-71 271.9 318 47.5
HanXRQChr16g0524621 Helianthus annuus HOM05D006420 ORTHO05D008009 1.6e-70 270.0 221 60.6
Phvul.007G179700 Phaseolus vulgaris HOM05D006420 ORTHO05D008009 2.7e-70 269.2 218 60.6
VMungo0720G1765 Vigna mungo HOM05D006420 ORTHO05D008009 4.0e-69 265.4 218 60.1
ECA232G4325 Erigeron canadensis HOM05D006420 ORTHO05D008009 5.7e-68 261.5 222 59.0
MBI04_g29616_MAGBIO Magnolia biondii HOM05D006420 ORTHO05D008009 1.3e-67 260.4 190 64.7
ATR0332G062 Amborella trichopoda HOM05D006420 ORTHO05D008009 8.3e-67 257.7 218 56.9
HPP92_020377 Vanilla planifolia HOM05D006420 ORTHO05D008009 9.1e-66 254.2 218 57.3
Zm00001eb054020 Zea mays HOM05D006420 ORTHO05D008009 1.2e-62 243.8 212 54.7
Os03g0699600 Oryza sativa ssp. japonica HOM05D006420 ORTHO05D008009 6.3e-59 231.5 214 50.9
MELO3C004253.2 Cucumis melo HOM05D000208 ORTHO05D000130 1.1e-58 230.7 151 70.9
Nitab4.5_0005541g0070 Nicotiana tabacum HOM05D006420 ORTHO05D008009 2.3e-56 223.0 221 52.9
Pp3c16_5370 Physcomitrium patens HOM05D006420 ORTHO05D008009 3.8e-56 222.2 212 51.4
SGA_v2.0_scaffold81G26063 Striga asiatica HOM05D006420 ORTHO05D000105 8.0e-54 214.5 415 33.5
Potri.005G032100 Populus trichocarpa HOM05D006420 ORTHO05D008009 5.2e-53 211.8 154 64.9
SMO356G0643 Selaginella moellendorffii HOM05D006420 ORTHO05D008009 1.7e-48 196.8 211 44.1
AagrBONN_evm.TU.Sc2ySwM_368.542 Anthoceros agrestis HOM05D006420 ORTHO05D008009 3.0e-48 196.1 209 45.5
Rhsim07G0185100 Rhododendron simsii HOM05D006420 ORTHO05D008009 1.5e-44 183.7 127 71.7
MD10G1167700 Malus domestica HOM05D006420 ORTHO05D008009 5.0e-40 168.7 111 69.4
CDE02G2742 Ceratophyllum demersum HOM05D006420 ORTHO05D008009 4.7e-38 162.2 118 62.7
Eucgr.B01949 Eucalyptus grandis HOM05D006420 ORTHO05D008009 9.2e-34 147.9 100 71.0
Sabra05G0034600 Salix brachista HOM05D006420 ORTHO05D008009 1.2e-33 147.5 134 55.2
Eucgr.B01859 Eucalyptus grandis HOM05D006420 ORTHO05D008009 3.5e-33 146.0 96 70.8
Eucgr.B01946 Eucalyptus grandis HOM05D006420 ORTHO05D008009 1.3e-32 144.1 93 73.1
QL03p007970 Quercus lobata HOM05D006420 ORTHO05D008009 1.8e-29 133.7 117 59.8
QL03p007144 Quercus lobata HOM05D006420 ORTHO05D008009 4.4e-28 129.0 118 59.3
vmacro23281 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 2.2e-27 126.7 93 58.1
Cre16.g667100 Chlamydomonas reinhardtii HOM05D006420 ORTHO05D008009 6.4e-27 125.2 232 34.9
SEGI_28170 Sequoiadendron giganteum HOM05D006420 ORTHO05D008009 8.4e-19 98.2 85 60.0
QL03p007137 Quercus lobata HOM05D006420 ORTHO05D008009 1.7e-16 90.5 67 61.2
QL03p007977 Quercus lobata HOM05D006420 ORTHO05D008009 1.7e-16 90.5 67 61.2
Thhalv10024156m.g Eutrema salsugineum HOM05D006420 ORTHO05D008009 1.1e-15 87.8 81 60.5
vmacro23282 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 3.4e-12 76.3 104 47.1


User provided reference genes

Program Settings