Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G65160 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1433.7 778 100.0
AL6G42690 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1374.4 778 95.5
AL1G61970 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1374.0 778 92.5
AL5G12240 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1347.0 778 94.5
AL9U10230 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1302.0 778 91.3
AL2G23360 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1298.1 778 92.3
AL3G37710 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1293.1 778 91.6
AL1G47450 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1283.5 778 88.3
AL8G45410 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1276.2 778 89.5
AL1G57330 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1253.4 778 87.4
AL8G11870 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1248.0 771 85.0
AL8G20450 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1248.0 772 88.3
AL4G24140 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1243.4 771 85.7
AL3G38160 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1235.7 778 85.7
AL2G18400 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1222.6 784 85.1
AL5G23160 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1213.7 772 87.2
AL6G47370 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1131.7 778 79.4
AL5G19630 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 1.3e-300 1036.2 781 74.0
AL77U10020 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 1.5e-293 1012.7 778 72.9
AL8G33480 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 3.8e-252 875.2 958 56.2
AT5G32590 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 8.0e-234 814.3 763 62.3
AL6G45550 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 1.2e-189 667.5 435 82.3
AL8G10170 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 5.3e-169 599.0 451 71.4
AL4G14310 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 3.9e-164 582.8 325 87.4
AT3G43148 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 1.5e-160 570.9 749 49.3
AT3G30230 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 3.8e-135 486.5 733 44.1
AT2G11010 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 4.7e-125 453.0 671 44.3
AL8G10150 Arabidopsis lyrata HOM05D000327 ORTHO05D000218 1.2e-91 342.0 251 78.9
AT4G06688 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 5.8e-91 339.7 693 38.2
AT5G35604 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 3.3e-70 270.8 329 49.5
AT1G36100 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 1.4e-60 238.8 162 75.3
AT3G32190 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 8.7e-55 219.5 256 55.9
AL4G17450 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 2.5e-49 201.4 291 41.6
AT5G33806 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 1.2e-43 182.6 239 46.4
CARHR115630 Cardamine hirsuta HOM05D008458 ORTHO05D010628 6.5e-42 176.8 232 37.9
AT3G33393 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 8.5e-34 149.8 100 70.0
Carub.0007s3731 Capsella rubella HOM05D009492 ORTHO05D011693 1.2e-32 146.0 719 28.2
CARHR184520 Cardamine hirsuta HOM05D008458 ORTHO05D010628 3.0e-31 141.4 188 38.8
Carub.0007s3611 Capsella rubella HOM05D009492 ORTHO05D011693 2.2e-29 135.2 693 24.4
Carub.0008s0728 Capsella rubella HOM05D009492 ORTHO05D011693 8.2e-29 133.3 698 25.4
CARHR174650 Cardamine hirsuta HOM05D008458 ORTHO05D010628 3.1e-28 131.3 143 42.0
AT3G33293 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 4.5e-27 127.5 134 56.0
CARHR053560 Cardamine hirsuta HOM05D008458 ORTHO05D010628 2.2e-26 125.2 153 44.4
AT3G32150 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 1.9e-25 122.1 200 43.0
Carub.0005s0956 Capsella rubella HOM05D009492 ORTHO05D011693 2.5e-25 121.7 192 35.9
AT3G32200 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 3.2e-25 121.3 133 57.1
CARHR035710 Cardamine hirsuta HOM05D008458 ORTHO05D010628 7.2e-25 120.2 174 35.6
Carub.0003s2904 Capsella rubella HOM05D006121 ORTHO05D009559 2.7e-24 118.2 677 24.2
Carub.0002s0916 Capsella rubella HOM05D009492 ORTHO05D011693 3.6e-24 117.9 655 24.3
CARHR118560 Cardamine hirsuta HOM05D008458 ORTHO05D010628 4.0e-23 114.4 122 49.2
BcaC08g42951 Brassica carinata HOM05D006121 ORTHO05D009559 4.4e-22 110.9 205 32.2
BcaC04g23210 Brassica carinata HOM05D006121 ORTHO05D009559 7.5e-22 110.2 213 34.3
AT4G03830 Arabidopsis thaliana HOM05D009492 ORTHO05D011693 1.7e-21 109.0 406 26.8
BcaC07g37147 Brassica carinata HOM05D006121 ORTHO05D009559 2.8e-21 108.2 208 29.8
AT4G08097 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 3.7e-21 107.8 170 44.1
BcaC01g02132 Brassica carinata HOM05D006121 ORTHO05D009559 4.8e-21 107.5 208 29.8
Carub.0004s0672 Capsella rubella HOM05D009492 ORTHO05D011693 1.1e-20 106.3 536 26.5
BcaC05g27675 Brassica carinata HOM05D006121 ORTHO05D009559 1.4e-20 105.9 204 29.4
AL2G23320 Arabidopsis lyrata HOM05D009492 ORTHO05D011693 2.4e-20 105.1 704 22.4
Carub.0002s0942 Capsella rubella HOM05D009492 ORTHO05D011693 1.2e-19 102.8 152 38.2
BcaC03g16521 Brassica carinata HOM05D006121 ORTHO05D009559 1.6e-19 102.4 182 33.5
BcaC03g15130 Brassica carinata HOM05D006121 ORTHO05D009559 2.0e-19 102.1 228 29.8
BcaC09g49745 Brassica carinata HOM05D006121 ORTHO05D009559 2.0e-19 102.1 174 32.8
Carub.0003s2742 Capsella rubella HOM05D009492 ORTHO05D011693 2.2e-18 98.6 175 32.6
AL1G50390 Arabidopsis lyrata HOM05D009492 ORTHO05D011693 5.0e-18 97.4 716 23.0
Carub.0006s2644 Capsella rubella HOM05D009492 ORTHO05D011693 5.0e-18 97.4 487 26.3
CARHR105800 Cardamine hirsuta HOM05D008458 ORTHO05D010628 5.0e-18 97.4 122 40.2
AT1G51172 Arabidopsis thaliana HOM05D009492 ORTHO05D011693 1.9e-17 95.5 745 21.9
Carub.0002s1048 Capsella rubella HOM05D009492 ORTHO05D011693 4.2e-17 94.4 394 27.2
AT2G15420 Arabidopsis thaliana HOM05D010629 ORTHO05D005680 5.5e-17 94.0 172 32.6
BcaC04g21502 Brassica carinata HOM05D006121 ORTHO05D009559 5.5e-17 94.0 174 32.2
Carub.0004s1788 Capsella rubella HOM05D009492 ORTHO05D011693 5.5e-17 94.0 529 27.6
BcaC09g49729 Brassica carinata HOM05D006121 ORTHO05D009559 7.2e-17 93.6 130 36.9
BcaC01g02238 Brassica carinata HOM05D006121 ORTHO05D009559 1.2e-16 92.8 245 29.8
Carub.0002s0975 Capsella rubella HOM05D009492 ORTHO05D011693 1.2e-16 92.8 141 35.5
Carub.0001s3424 Capsella rubella HOM05D009492 ORTHO05D011693 6.1e-16 90.5 404 26.7
Carub.0108s0001 Capsella rubella HOM05D016834 ORTHO05D016863 1.0e-15 89.7 255 27.8
BcaC09g49299 Brassica carinata HOM05D006121 ORTHO05D009559 1.4e-15 89.4 160 30.6
CARHR217200 Cardamine hirsuta HOM05D020629 ORTHO05D022218 1.4e-15 89.4 302 28.8
BcaC02g11248 Brassica carinata HOM05D006121 ORTHO05D009559 3.0e-15 88.2 157 29.9
BcaC07g37897 Brassica carinata HOM05D006121 ORTHO05D009559 4.0e-15 87.8 208 28.4
Carub.0007s2123 Capsella rubella HOM05D010629 ORTHO05D005680 8.8e-15 86.7 207 30.9
Carub.0008s1221 Capsella rubella HOM05D016834 ORTHO05D016863 8.8e-15 86.7 255 27.1
BcaC03g16227 Brassica carinata HOM05D006121 ORTHO05D009559 1.2e-14 86.3 242 27.7
AL7G45790 Arabidopsis lyrata HOM05D011598 ORTHO05D013181 1.5e-14 85.9 209 27.8
Carub.0002s1244 Capsella rubella HOM05D010629 ORTHO05D005680 1.5e-14 85.9 207 30.4
AL1G53160 Arabidopsis lyrata HOM05D011598 ORTHO05D013181 2.0e-14 85.5 325 24.3
AL3G15920 Arabidopsis lyrata HOM05D011598 ORTHO05D013181 2.0e-14 85.5 325 24.3
Carub.0006s0276 Capsella rubella HOM05D010629 ORTHO05D005680 2.0e-14 85.5 207 30.4
Carub.0003s2886 Capsella rubella HOM05D016834 ORTHO05D016863 4.4e-14 84.3 255 27.1
CARHR181090 Cardamine hirsuta HOM05D008458 ORTHO05D010628 4.4e-14 84.3 90 45.6
Carub.0353s0001 Capsella rubella HOM05D010629 ORTHO05D005680 5.7e-14 84.0 194 30.9
Carub.0005s0210 Capsella rubella HOM05D010629 ORTHO05D005680 7.5e-14 83.6 207 30.0
Carub.0007s3212 Capsella rubella HOM05D009492 ORTHO05D011693 7.5e-14 83.6 364 28.0
Carub.0007s3091 Capsella rubella HOM05D016834 ORTHO05D016863 4.8e-13 80.9 288 27.4
AL3G43600 Arabidopsis lyrata HOM05D010629 ORTHO05D005680 6.3e-13 80.5 174 28.7
AT1G46696 Arabidopsis thaliana HOM05D009492 ORTHO05D011693 6.3e-13 80.5 190 28.9
BcaC03g17371 Brassica carinata HOM05D006121 ORTHO05D009559 1.1e-12 79.7 161 30.4
BcaC05g27433 Brassica carinata HOM05D006121 ORTHO05D009559 1.1e-12 79.7 214 29.4
Carub.0073s0002 Capsella rubella HOM05D016834 ORTHO05D016863 1.1e-12 79.7 222 26.6
CARHR289250 Cardamine hirsuta HOM05D020629 ORTHO05D022218 1.4e-12 79.3 400 26.5
Carub.0008s0719 Capsella rubella HOM05D009492 ORTHO05D011693 7.0e-12 77.0 173 29.5
BcaC01g05819 Brassica carinata HOM05D006121 ORTHO05D009559 1.6e-11 75.9 332 25.9
CARHR153510 Cardamine hirsuta HOM05D008458 ORTHO05D010628 5.9e-11 73.9 66 50.0
Carub.0006s2612 Capsella rubella HOM05D016834 ORTHO05D016863 1.3e-10 72.8 200 27.0
CARHR150680 Cardamine hirsuta HOM05D008458 ORTHO05D010628 1.3e-10 72.8 63 57.1
AT3G42060 Arabidopsis thaliana HOM05D010629 ORTHO05D005680 1.7e-10 72.4 186 26.3
Carub.0002s1012 Capsella rubella HOM05D010629 ORTHO05D005680 1.7e-10 72.4 196 29.6
Carub.0003s2394 Capsella rubella HOM05D016834 ORTHO05D016863 1.7e-10 72.4 362 25.7
AT1G20400 Arabidopsis thaliana HOM05D011598 ORTHO05D013181 2.3e-10 72.0 359 24.5
Carub.0003s2807 Capsella rubella HOM05D010629 ORTHO05D005680 2.3e-10 72.0 167 26.3
CARHR034160 Cardamine hirsuta HOM05D020629 ORTHO05D022218 2.9e-10 71.6 171 29.8
AT4G32200 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 3.8e-10 71.2 236 25.4
BcaC08g43200 Brassica carinata HOM05D002078 ORTHO05D005680 3.8e-10 71.2 144 33.3
Carub.0004s1088 Capsella rubella HOM05D010629 ORTHO05D005680 3.8e-10 71.2 145 33.1
BolC8t48644H Brassica oleracea HOM05D002078 ORTHO05D005680 6.6e-10 70.5 209 27.8
Carub.0003s2830 Capsella rubella HOM05D009492 ORTHO05D011693 6.6e-10 70.5 355 24.8
BcaB07g33910 Brassica carinata HOM05D002078 ORTHO05D005680 1.1e-09 69.7 123 35.8
BcaC02g11611 Brassica carinata HOM05D002078 ORTHO05D005680 1.1e-09 69.7 213 27.7
BcaC03g16371 Brassica carinata HOM05D006121 ORTHO05D009559 1.1e-09 69.7 177 28.8
Carub.0072s0001 Capsella rubella HOM05D010629 ORTHO05D005680 1.9e-09 68.9 167 25.7
CSS0040956 Camellia sinensis var. sinensis HOM05D035337 ORTHO05D000116 2.5e-09 68.6 148 30.4
AL3G49830 Arabidopsis lyrata HOM05D011598 ORTHO05D013181 4.2e-09 67.8 170 25.9
BcaC03g17686 Brassica carinata HOM05D002078 ORTHO05D005680 5.5e-09 67.4 123 31.7
BcaC07g37903 Brassica carinata HOM05D006121 ORTHO05D009559 5.5e-09 67.4 138 31.9
BcaC01g06835 Brassica carinata HOM05D006121 ORTHO05D009559 7.2e-09 67.0 337 26.1
Carub.0005s0837 Capsella rubella HOM05D010629 ORTHO05D005680 7.2e-09 67.0 200 26.5
BcaC02g09767 Brassica carinata HOM05D006121 ORTHO05D009559 9.5e-09 66.6 193 26.9
Sp7g11540 Schrenkiella parvula HOM05D010529 ORTHO05D012528 9.5e-09 66.6 266 26.7
BcaC02g10377 Brassica carinata HOM05D002078 ORTHO05D005680 1.2e-08 66.2 173 28.9
Carub.0007s3050 Capsella rubella HOM05D010629 ORTHO05D005680 1.2e-08 66.2 202 25.2
Thhalv10023163m.g Eutrema salsugineum HOM05D010629 ORTHO05D016863 1.6e-08 65.9 101 35.6
Carub.0006s2663 Capsella rubella HOM05D009492 ORTHO05D011693 2.1e-08 65.5 118 33.1
BolC3t20163H Brassica oleracea HOM05D006121 ORTHO05D009559 2.8e-08 65.1 81 38.3
BcaB03g15586 Brassica carinata HOM05D002078 ORTHO05D005680 3.6e-08 64.7 172 28.5
AL9U10150 Arabidopsis lyrata HOM05D011598 ORTHO05D013181 4.7e-08 64.3 170 25.3
BcaC01g04584 Brassica carinata HOM05D002078 ORTHO05D005680 4.7e-08 64.3 149 30.9
AT5G38190 Arabidopsis thaliana HOM05D034490 ORTHO05D019745 8.0e-08 63.5 187 27.3
CARHR181790 Cardamine hirsuta HOM05D008458 ORTHO05D010628 8.0e-08 63.5 63 50.8
RcHm_v2.0_Chr2g0084191 Rosa chinensis HOM05D031301 ORTHO05D010628 1.4e-07 62.8 115 33.9
AT1G32010 Arabidopsis thaliana HOM05D010629 ORTHO05D019745 1.8e-07 62.4 189 26.5
BcaC09g50043 Brassica carinata HOM05D002078 ORTHO05D005680 1.8e-07 62.4 123 31.7
A08p08190 Brassica napus HOM05D008596 ORTHO05D003268 2.3e-07 62.0 218 22.5
BcaC02g10131 Brassica carinata HOM05D002078 ORTHO05D005680 3.0e-07 61.6 154 27.9
BcaC02g10884 Brassica carinata HOM05D002078 ORTHO05D005680 4.0e-07 61.2 123 32.5
BcaC09g49293 Brassica carinata HOM05D002078 ORTHO05D005680 4.0e-07 61.2 110 33.6
BcaC07g37265 Brassica carinata HOM05D006121 ORTHO05D009559 1.5e-06 59.3 103 34.0
BcaC07g37462 Brassica carinata HOM05D002078 ORTHO05D005680 1.5e-06 59.3 123 29.3
CARHR104300 Cardamine hirsuta HOM05D008458 ORTHO05D010628 1.5e-06 59.3 153 28.8
BcaC08g43580 Brassica carinata HOM05D006121 ORTHO05D009559 2.0e-06 58.9 116 27.6
BcaC03g16426 Brassica carinata HOM05D002078 ORTHO05D005680 3.4e-06 58.2 173 26.6
BcaC06g35841 Brassica carinata HOM05D006121 ORTHO05D009559 3.4e-06 58.2 103 33.0
CSS0037614 Camellia sinensis var. sinensis HOM05D010739 ORTHO05D012209 5.7e-06 57.4 138 29.7
CARHR218210 Cardamine hirsuta HOM05D008458 ORTHO05D010628 5.7e-06 57.4 65 43.1
Sp6g07550 Schrenkiella parvula HOM05D010772 ORTHO05D005680 7.5e-06 57.0 101 31.7
SpUn0003_0260 Schrenkiella parvula HOM05D010529 ORTHO05D012528 7.5e-06 57.0 136 28.7


User provided reference genes

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