Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G64510 Arabidopsis lyrata HOM05D004577 ORTHO05D005062 5.3e-65 251.1 152 100.0
AT1G56200 Arabidopsis thaliana HOM05D004577 ORTHO05D005062 1.0e-60 236.9 155 95.5
Carub.0001s4488 Capsella rubella HOM05D004577 ORTHO05D005062 3.7e-58 228.4 159 91.8
CARHR045970 Cardamine hirsuta HOM05D004577 ORTHO05D005062 2.9e-55 218.8 157 90.4
A05p12690 Brassica napus HOM05D004577 ORTHO05D005062 2.9e-47 192.2 155 82.6
C04p16620 Brassica napus HOM05D004577 ORTHO05D005062 1.1e-46 190.3 155 81.9
BraA05t20207Z Brassica rapa HOM05D004577 ORTHO05D005062 1.1e-46 190.3 155 81.9
BolC4t23212H Brassica oleracea HOM05D004577 ORTHO05D005062 4.2e-46 188.3 155 81.9
BcaB02g10507 Brassica carinata HOM05D004577 ORTHO05D005062 1.0e-44 183.7 155 81.3
Sp1g41840 Schrenkiella parvula HOM05D004577 ORTHO05D005062 1.5e-43 179.9 151 81.5
Thhalv10011850m.g Eutrema salsugineum HOM05D004577 ORTHO05D005062 9.7e-43 177.2 153 79.7
THA.LOC104826365 Tarenaya hassleriana HOM05D004577 ORTHO05D005062 3.7e-34 148.7 162 70.4
Thecc.07G153300 Theobroma cacao HOM05D004577 ORTHO05D005062 4.8e-26 121.7 162 57.4
Duzib187G1448 Durio zibethinus HOM05D004577 ORTHO05D005062 1.2e-24 117.1 159 52.2
Gohir.A01G038700 Gossypium hirsutum HOM05D004577 ORTHO05D005062 1.2e-24 117.1 139 61.2
Gohir.D09G118900 Gossypium hirsutum HOM05D004577 ORTHO05D005062 1.2e-24 117.1 160 56.2
PGR004G1013 Punica granatum HOM05D004577 ORTHO05D005062 4.5e-24 115.2 138 63.0
Solyc04g051850.3 Solanum lycopersicum HOM05D004577 ORTHO05D005062 1.1e-22 110.5 123 69.1
Sopen04g023180 Solanum pennellii HOM05D004577 ORTHO05D005062 1.1e-22 110.5 123 69.1
PGSC0003DMG400016552 Solanum tuberosum HOM05D004577 ORTHO05D005062 1.1e-22 110.5 123 69.1
Sopen08g002020 Solanum pennellii HOM05D004577 ORTHO05D005062 2.5e-22 109.4 121 66.1
Solyc08g006050.2 Solanum lycopersicum HOM05D004577 ORTHO05D005062 3.2e-22 109.0 122 67.2
C03p76790 Brassica napus HOM05D004577 ORTHO05D005062 5.5e-22 108.2 106 63.2
Eucgr.K00372 Eucalyptus grandis HOM05D004577 ORTHO05D005062 5.5e-22 108.2 101 74.3
DCAR_019165 Daucus carota HOM05D004577 ORTHO05D005062 7.2e-22 107.8 99 73.7
Duzib213G0774 Durio zibethinus HOM05D004577 ORTHO05D005062 7.2e-22 107.8 161 53.4
BcaB03g13825 Brassica carinata HOM05D004577 ORTHO05D005062 1.2e-21 107.1 93 66.7
A07p09910 Brassica napus HOM05D004577 ORTHO05D005062 1.2e-21 107.1 93 66.7
BcaNung05263 Brassica carinata HOM05D004577 ORTHO05D005062 2.1e-21 106.3 94 67.0
A08p24420 Brassica napus HOM05D004577 ORTHO05D005062 2.1e-21 106.3 90 67.8
C07p15110 Brassica napus HOM05D004577 ORTHO05D005062 2.1e-21 106.3 93 66.7
BolC7t42015H Brassica oleracea HOM05D004577 ORTHO05D005062 2.1e-21 106.3 93 66.7
BraA08t34397Z Brassica rapa HOM05D004577 ORTHO05D005062 2.1e-21 106.3 90 67.8
Peaxi162Scf00359g00123 Petunia axillaris HOM05D004577 ORTHO05D005062 2.1e-21 106.3 102 75.5
Migut.M01633 Erythranthe guttata HOM05D004577 ORTHO05D005062 2.8e-21 105.9 102 74.5
AL1G44500 Arabidopsis lyrata HOM05D004577 ORTHO05D005062 6.1e-21 104.8 93 71.0
AT1G30475 Arabidopsis thaliana HOM05D004577 ORTHO05D005062 8.0e-21 104.4 110 63.6
Potri.011G163900 Populus trichocarpa HOM05D004577 ORTHO05D005062 8.0e-21 104.4 162 56.2
Sp1g26310 Schrenkiella parvula HOM05D004577 ORTHO05D005062 8.0e-21 104.4 99 64.6
PGSC0003DMG400014846 Solanum tuberosum HOM05D004577 ORTHO05D005062 8.0e-21 104.4 123 65.9
CSS0013049 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 1.0e-20 104.0 102 73.5
MSTRG.13031 Avicennia marina HOM05D004577 ORTHO05D005062 1.4e-20 103.6 102 72.5
BcaC01g00196 Brassica carinata HOM05D004577 ORTHO05D005062 1.4e-20 103.6 107 62.6
BolC3t19933H Brassica oleracea HOM05D004577 ORTHO05D005062 1.4e-20 103.6 107 62.6
DCAR_015198 Daucus carota HOM05D004577 ORTHO05D005062 1.4e-20 103.6 96 74.0
CSS0050514 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 3.0e-20 102.4 113 69.0
Cc10_g02580 Coffea canephora HOM05D004577 ORTHO05D005062 3.0e-20 102.4 102 73.5
Thhalv10008915m.g Eutrema salsugineum HOM05D004577 ORTHO05D005062 3.0e-20 102.4 99 68.7
MSTRG.14503 Avicennia marina HOM05D004577 ORTHO05D005062 5.2e-20 101.7 101 72.3
TAR627G0729 Trochodendron aralioides HOM05D004577 ORTHO05D005062 5.2e-20 101.7 102 72.5
Eucgr.E00269 Eucalyptus grandis HOM05D004577 ORTHO05D005062 8.8e-20 100.9 127 54.3
MBI15_g38535_MAGBIO Magnolia biondii HOM05D004577 ORTHO05D005062 8.8e-20 100.9 100 72.0
Sed0027009 Sechium edule HOM05D004577 ORTHO05D005062 8.8e-20 100.9 104 73.1
CSS0030856 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 1.2e-19 100.5 101 72.3
CSS0048553 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 1.2e-19 100.5 101 72.3
Cfa021890 Carpinus fangiana HOM05D004577 ORTHO05D005062 1.2e-19 100.5 106 72.6
BraA07t28780Z Brassica rapa HOM05D004577 ORTHO05D005062 1.5e-19 100.1 94 64.9
Dinv40884 Davidia involucrata HOM05D002691 ORTHO05D003304 1.5e-19 100.1 101 71.3
CiPaw.11G206900 Carya illinoinensis HOM05D004577 ORTHO05D005062 2.0e-19 99.8 103 73.8
ClCG10G003880 Citrullus lanatus HOM05D004577 ORTHO05D005062 2.0e-19 99.8 119 65.5
ClCG10G004020 Citrullus lanatus HOM05D004577 ORTHO05D005062 2.0e-19 99.8 119 65.5
ClCG10G004040 Citrullus lanatus HOM05D004577 ORTHO05D005062 2.0e-19 99.8 119 65.5
unitig_578.g16418 Utricularia gibba HOM05D004577 ORTHO05D005062 2.0e-19 99.8 101 71.3
CsaV3_3G003860 Cucumis sativus L. HOM05D004577 ORTHO05D005062 2.6e-19 99.4 104 72.1
MD03G1035300 Malus domestica HOM05D004577 ORTHO05D005062 2.6e-19 99.4 165 48.5
MELO3C014068.2 Cucumis melo HOM05D004577 ORTHO05D005062 3.4e-19 99.0 130 63.1
Haze_09864 Corylus avellana HOM05D004577 ORTHO05D005062 4.4e-19 98.6 104 73.1
Prupe.6G028300 Prunus persica HOM05D004577 ORTHO05D005062 4.4e-19 98.6 169 50.3
Sc22g0002120 Simmondsia chinensis HOM05D004577 ORTHO05D005062 5.7e-19 98.2 150 53.3
CiPaw.12G140600 Carya illinoinensis HOM05D004577 ORTHO05D005062 7.5e-19 97.8 144 59.7
TAR629G1725 Trochodendron aralioides HOM05D004577 ORTHO05D005062 7.5e-19 97.8 102 70.6
CARHR029880 Cardamine hirsuta HOM05D004577 ORTHO05D005062 9.8e-19 97.4 103 65.0
QL08p002692 Quercus lobata HOM05D004577 ORTHO05D005062 9.8e-19 97.4 137 58.4
Nn1g08321 Nelumbo nucifera HOM05D004577 ORTHO05D005062 1.3e-18 97.1 103 66.0
Lalb_Chr16g0391221 Lupinus albus HOM05D004577 ORTHO05D005062 1.7e-18 96.7 106 70.8
Nitab4.5_0000904g0010 Nicotiana tabacum HOM05D004577 ORTHO05D005062 1.7e-18 96.7 102 69.6
Oeu021394.1 Olea europaea HOM05D004577 ORTHO05D005062 1.7e-18 96.7 102 70.6
Carub.0001s2869 Capsella rubella HOM05D004577 ORTHO05D005062 2.2e-18 96.3 97 67.0
TWI38G1007 Tripterygium wilfordii HOM05D004577 ORTHO05D005062 2.2e-18 96.3 104 65.4
Glyma.18G074400 Glycine max HOM05D004577 ORTHO05D005062 3.7e-18 95.5 104 70.2
Lsat_1_v5_gn_9_89100 Lactuca sativa HOM05D004577 ORTHO05D005062 3.7e-18 95.5 107 66.4
CDE01G0461 Ceratophyllum demersum HOM05D004577 ORTHO05D005062 4.9e-18 95.1 103 70.9
Ca_12454_v3 Cicer arietinum L. HOM05D004577 ORTHO05D005062 4.9e-18 95.1 114 64.9
THA.LOC104798603 Tarenaya hassleriana HOM05D004577 ORTHO05D005062 4.9e-18 95.1 94 69.1
VMungo0540G1151 Vigna mungo HOM05D004577 ORTHO05D005062 4.9e-18 95.1 121 64.5
Nitab4.5_0005865g0040 Nicotiana tabacum HOM05D004577 ORTHO05D005062 6.3e-18 94.7 102 68.6
Glyma.08G332600 Glycine max HOM05D004577 ORTHO05D005062 1.1e-17 94.0 104 69.2
Aqoxy5G01161 Aquilegia oxysepala HOM05D004577 ORTHO05D005062 1.4e-17 93.6 152 56.6
CDE02G2114 Ceratophyllum demersum HOM05D000091 ORTHO05D002116 1.4e-17 93.6 106 68.9
MD11G1037000 Malus domestica HOM05D004577 ORTHO05D005062 1.4e-17 93.6 174 47.1
PSO541G2111 Papaver somniferum HOM05D004577 ORTHO05D005062 1.4e-17 93.6 97 74.2
PSO675G7851 Papaver somniferum HOM05D004577 ORTHO05D005062 1.4e-17 93.6 97 74.2
Manes.01G021500 Manihot esculenta HOM05D004577 ORTHO05D005062 1.8e-17 93.2 125 55.2
ATR0681G062 Amborella trichopoda HOM05D004577 ORTHO05D005062 2.4e-17 92.8 114 61.4
Lj6g0018119 Lotus japonicus HOM05D004577 ORTHO05D005062 2.4e-17 92.8 103 67.0
ECA240G1529 Erigeron canadensis HOM05D000491 ORTHO05D000359 3.1e-17 92.4 155 54.2
Manes.05G118000 Manihot esculenta HOM05D004577 ORTHO05D005062 4.1e-17 92.0 103 69.9
Phvul.006G059254 Phaseolus vulgaris HOM05D004577 ORTHO05D005062 5.4e-17 91.7 104 69.2
FAN16G3679 Fragaria x ananassa HOM05D004577 ORTHO05D005062 7.0e-17 91.3 170 45.9
FAN21G3744 Fragaria x ananassa HOM05D004577 ORTHO05D005062 9.2e-17 90.9 170 45.9
FAN25G2651 Fragaria x ananassa HOM05D004577 ORTHO05D005062 9.2e-17 90.9 170 45.9
unitig_8.g4693 Utricularia gibba HOM05D002703 ORTHO05D002921 9.2e-17 90.9 156 55.1
Ciclev10009709m.g Citrus clementina HOM05D004577 ORTHO05D005062 1.2e-16 90.5 129 57.4
Psat5g166440 Pisum sativum HOM05D004577 ORTHO05D005062 1.2e-16 90.5 104 68.3
RcHm_v2.0_Chr5g0075591 Rosa chinensis HOM05D004577 ORTHO05D005062 1.2e-16 90.5 115 56.5
FvH4_3g42270 Fragaria vesca HOM05D004577 ORTHO05D005062 2.7e-16 89.4 170 45.9
Medtr3g461020 Medicago truncatula HOM05D004577 ORTHO05D005062 2.7e-16 89.4 111 64.9
HPP92_020499 Vanilla planifolia HOM05D004577 ORTHO05D005062 3.5e-16 89.0 107 66.4
arahy.Tifrunner.gnm1.ann1.DGYJ7N Arachis hypogaea HOM05D004577 ORTHO05D005062 4.5e-16 88.6 105 68.6
arahy.Tifrunner.gnm1.ann1.JWFX0I Arachis hypogaea HOM05D004577 ORTHO05D005062 4.5e-16 88.6 105 68.6
CANSAT11G1943 Cannabis sativa HOM05D004577 ORTHO05D005062 5.9e-16 88.2 110 66.4
Aa31LG10G60 Aethionema arabicum HOM05D004577 ORTHO05D005062 1.3e-15 87.0 92 59.8
Migut.H01738 Erythranthe guttata HOM05D004577 ORTHO05D005062 1.3e-15 87.0 101 66.3
Gorai.002G035900 Gossypium raimondii HOM05D004577 ORTHO05D005062 1.7e-15 86.7 159 48.4
SGA_v2.0_scaffold8G04425 Striga asiatica HOM05D004577 ORTHO05D005062 2.9e-15 85.9 93 69.9
HanXRQChr13g0408461 Helianthus annuus HOM05D004577 ORTHO05D005062 6.6e-15 84.7 150 51.3
FAN11G1489 Fragaria x ananassa HOM05D004577 ORTHO05D005062 8.6e-15 84.3 170 44.7
MBI07_g28243_MAGBIO Magnolia biondii HOM05D004577 ORTHO05D005062 1.1e-14 84.0 100 57.0
TWI39G1131 Tripterygium wilfordii HOM05D004577 ORTHO05D005062 1.1e-14 84.0 141 50.4
HanXRQChr03g0080381 Helianthus annuus HOM05D004577 ORTHO05D005062 1.5e-14 83.6 99 66.7
Aa31LG10G50 Aethionema arabicum HOM05D004577 ORTHO05D005062 1.9e-14 83.2 67 80.6
Hma1.2p1_3473F.1_g336250 Hydrangea macrophylla HOM05D004577 ORTHO05D005062 3.3e-14 82.4 87 65.5
GSVIVG01014742001 Vitis vinifera HOM05D004577 ORTHO05D005062 4.3e-14 82.0 60 71.7
EL10Ac7g17857 Beta vulgaris HOM05D004577 ORTHO05D005062 5.6e-14 81.6 143 55.2
EL10Ac2g03806 Beta vulgaris HOM05D004577 ORTHO05D005062 9.5e-14 80.9 98 68.4
Gohir.A04G049900 Gossypium hirsutum HOM05D004577 ORTHO05D005062 3.6e-13 79.0 106 51.9
TPR.G17935 Trifolium pratense HOM05D004577 ORTHO05D005062 4.7e-13 78.6 110 58.2
Hma1.2p1_0193F.1_g083910 Hydrangea macrophylla HOM05D004577 ORTHO05D005062 8.0e-13 77.8 88 71.6
SalBow1G5164 Salvia bowleyana HOM05D004577 ORTHO05D005062 8.0e-13 77.8 135 52.6
Nitab4.5_0000329g0070 Nicotiana tabacum HOM05D004577 ORTHO05D005062 3.0e-12 75.9 119 52.1
Atru.chr2.3835 Acer truncatum HOM05D004577 ORTHO05D005062 4.0e-12 75.5 151 46.4
Atru.chr1.1924 Acer truncatum HOM05D004577 ORTHO05D005062 6.8e-12 74.7 136 47.1
unitig_0.g986 Utricularia gibba HOM05D004577 ORTHO05D005062 8.9e-12 74.3 87 65.5
QL08p055193 Quercus lobata HOM05D004577 ORTHO05D005062 1.1e-09 67.4 136 44.9
Dinv26646 Davidia involucrata HOM05D004577 ORTHO05D005062 1.8e-09 66.6 89 57.3
Gorai.008G093100 Gossypium raimondii HOM05D004577 ORTHO05D005062 2.4e-09 66.2 68 69.1
Mapoly0050s0087 Marchantia polymorpha HOM05D034204 ORTHO05D005062 4.1e-09 65.5 100 54.0
Gorai.008G148200 Gossypium raimondii HOM05D004577 ORTHO05D005062 5.4e-09 65.1 68 69.1
CiPaw.01G270900 Carya illinoinensis HOM05D004577 ORTHO05D005062 7.0e-09 64.7 131 47.3
Nitab4.5_0006854g0030 Nicotiana tabacum HOM05D004577 ORTHO05D005062 9.2e-09 64.3 121 52.9
Gorai.N025400 Gossypium raimondii HOM05D004577 ORTHO05D005062 1.6e-08 63.5 152 42.1
Gorai.009G401800 Gossypium raimondii HOM05D004577 ORTHO05D005062 2.0e-08 63.2 67 61.2
Duzib268G0228 Durio zibethinus HOM05D004577 ORTHO05D005062 4.6e-08 62.0 95 46.3
HPP92_011618 Vanilla planifolia HOM05D004577 ORTHO05D005062 4.6e-08 62.0 109 49.5
Gohir.D08G183166 Gossypium hirsutum HOM05D004577 ORTHO05D005062 3.9e-07 58.9 67 64.2
Lalb_Chr03g0040851 Lupinus albus HOM05D011393 ORTHO05D013493 3.9e-07 58.9 94 51.1
TPR.G2686 Trifolium pratense HOM05D011393 ORTHO05D013493 2.5e-06 56.2 145 42.1
AagrBONN_evm.TU.Sc2ySwM_228.3972 Anthoceros agrestis HOM05D004577 ORTHO05D005062 3.3e-06 55.8 104 46.2
Gohir.A01G038800 Gossypium hirsutum HOM05D004577 ORTHO05D005062 3.3e-06 55.8 77 48.1
Gohir.D11G274650 Gossypium hirsutum HOM05D004577 ORTHO05D005062 4.3e-06 55.5 74 50.0
Cfa001670 Carpinus fangiana HOM05D004577 ORTHO05D005062 5.6e-06 55.1 84 61.9
Haze_16864 Corylus avellana HOM05D004577 ORTHO05D005062 5.6e-06 55.1 107 51.4
Mapoly0031s0147 Marchantia polymorpha HOM05D034204 ORTHO05D005062 5.6e-06 55.1 100 52.0


User provided reference genes

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