Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G63890 Arabidopsis lyrata HOM05D011788 ORTHO05D014339 8.9e-78 293.5 145 100.0
AT1G55775 Arabidopsis thaliana HOM05D011788 ORTHO05D014339 6.0e-66 254.2 143 90.2
Carub.0001s4434 Capsella rubella HOM05D011788 ORTHO05D014339 1.5e-61 239.6 145 83.4
CARHR045460 Cardamine hirsuta HOM05D011788 ORTHO05D014339 5.6e-48 194.5 150 69.3
Thhalv10011398m.g Eutrema salsugineum HOM05D001067 ORTHO05D000876 7.3e-48 194.1 149 69.8
C03p93210 Brassica napus HOM05D011788 ORTHO05D014339 4.0e-46 188.3 143 67.8
CARHR045490 Cardamine hirsuta HOM05D011788 ORTHO05D014339 4.0e-46 188.3 139 71.2
BolC3t21619H Brassica oleracea HOM05D011788 ORTHO05D014339 1.2e-45 186.8 138 68.8
Sp1g41360 Schrenkiella parvula HOM05D001067 ORTHO05D000876 1.6e-42 176.4 145 66.2
BcaC01g01566 Brassica carinata HOM05D011788 ORTHO05D014339 1.3e-39 166.8 122 70.5
BraA05t20628Z Brassica rapa HOM05D011788 ORTHO05D014339 5.3e-38 161.4 148 62.8
C06p16230 Brassica napus HOM05D011788 ORTHO05D014339 2.9e-36 155.6 148 60.8
BolC6t36820H Brassica oleracea HOM05D011788 ORTHO05D014339 2.9e-36 155.6 148 60.8
BcaC08g44218 Brassica carinata HOM05D011788 ORTHO05D014339 4.2e-35 151.8 150 59.3
Aa31LG10G410 Aethionema arabicum HOM05D011788 ORTHO05D014339 9.3e-35 150.6 134 61.2
A08p00300 Brassica napus HOM05D001067 ORTHO05D000876 9.3e-35 150.6 127 60.6
BcaB02g10799 Brassica carinata HOM05D011788 ORTHO05D014339 6.0e-34 147.9 151 58.3
THA.LOC104815685 Tarenaya hassleriana HOM05D011788 ORTHO05D000687 2.1e-31 139.4 150 58.7
QL08p002030 Quercus lobata HOM05D000913 ORTHO05D000687 3.8e-12 75.5 137 36.5
CiPaw.01G191500 Carya illinoinensis HOM05D000913 ORTHO05D000687 6.5e-12 74.7 96 50.0
Haze_09880 Corylus avellana HOM05D000913 ORTHO05D000687 6.5e-12 74.7 73 56.2
CiPaw.11G208300 Carya illinoinensis HOM05D000913 ORTHO05D000687 8.5e-12 74.3 77 57.1
CiPaw.14G082800 Carya illinoinensis HOM05D000913 ORTHO05D000687 1.9e-11 73.2 73 58.9
QL08p002039 Quercus lobata HOM05D000913 ORTHO05D000687 1.6e-10 70.1 140 33.6
Haze_09888 Corylus avellana HOM05D000913 ORTHO05D000687 3.6e-10 68.9 93 46.2
QL08p001958 Quercus lobata HOM05D000913 ORTHO05D000687 4.6e-10 68.6 142 33.1
Haze_09886 Corylus avellana HOM05D001067 ORTHO05D000876 1.0e-09 67.4 71 56.3
Nn1g07601 Nelumbo nucifera HOM05D000913 ORTHO05D000687 6.7e-09 64.7 79 48.1
VMungo0647G1590 Vigna mungo HOM05D000913 ORTHO05D000687 6.7e-09 64.7 168 31.5
Cfa016930 Carpinus fangiana HOM05D000913 ORTHO05D000687 1.1e-08 63.9 136 36.8
MBI14_g43020_MAGBIO Magnolia biondii HOM05D000913 ORTHO05D000687 1.1e-08 63.9 73 49.3
Gorai.009G446400 Gossypium raimondii HOM05D000913 ORTHO05D000687 1.5e-08 63.5 116 38.8
Cpa.g.sc12.95 Carica papaya HOM05D000913 ORTHO05D000687 3.3e-08 62.4 103 38.8
Migut.M01600 Erythranthe guttata HOM05D000913 ORTHO05D000687 3.3e-08 62.4 94 42.6
TPR.G27426 Trifolium pratense HOM05D000913 ORTHO05D000687 3.3e-08 62.4 73 47.9
DCAR_019660 Daucus carota HOM05D000913 ORTHO05D000687 4.3e-08 62.0 146 32.9
Thecc.07G019800 Theobroma cacao HOM05D000913 ORTHO05D000687 4.3e-08 62.0 73 46.6
CiPaw.16G094900 Carya illinoinensis HOM05D000913 ORTHO05D000687 7.4e-08 61.2 116 37.9
Migut.E01774 Erythranthe guttata HOM05D000913 ORTHO05D000687 7.4e-08 61.2 81 45.7
Gohir.A04G009400 Gossypium hirsutum HOM05D000913 ORTHO05D000687 9.7e-08 60.8 73 47.9
CARHR095770 Cardamine hirsuta HOM05D000913 ORTHO05D000687 1.3e-07 60.5 125 36.8
Atru.chr2.3866 Acer truncatum HOM05D000913 ORTHO05D000687 2.2e-07 59.7 72 47.2
MBI16_g31488_MAGBIO Magnolia biondii HOM05D000913 ORTHO05D000687 2.2e-07 59.7 62 46.8
SalBow8G4938 Salvia bowleyana HOM05D000913 ORTHO05D000687 2.2e-07 59.7 110 38.2
Carub.0003s2011 Capsella rubella HOM05D000913 ORTHO05D000687 2.8e-07 59.3 149 32.2
Cpa.g.sc12.188 Carica papaya HOM05D000913 ORTHO05D000687 2.8e-07 59.3 81 44.4
Glyma.09G016400 Glycine max HOM05D000913 ORTHO05D000687 3.7e-07 58.9 72 43.1
Potri.001G468500 Populus trichocarpa HOM05D000913 ORTHO05D000687 3.7e-07 58.9 72 44.4
TAR629G2544 Trochodendron aralioides HOM05D000913 ORTHO05D000687 3.7e-07 58.9 73 47.9
AL3G33880 Arabidopsis lyrata HOM05D000913 ORTHO05D000687 4.8e-07 58.5 77 42.9
DCAR_021079 Daucus carota HOM05D000913 ORTHO05D000687 4.8e-07 58.5 72 44.4
Gohir.D05G378800 Gossypium hirsutum HOM05D000913 ORTHO05D000687 4.8e-07 58.5 73 45.2
Gorai.N012600 Gossypium raimondii HOM05D000913 ORTHO05D000687 4.8e-07 58.5 73 45.2
HanXRQChr11g0329801 Helianthus annuus HOM05D000913 ORTHO05D000687 4.8e-07 58.5 81 42.0
Nn1g06060 Nelumbo nucifera HOM05D000913 ORTHO05D000687 4.8e-07 58.5 73 46.6
Oeu049436.1 Olea europaea HOM05D000913 ORTHO05D000687 4.8e-07 58.5 82 46.3
Dinv16085 Davidia involucrata HOM05D000913 ORTHO05D000687 6.3e-07 58.2 73 47.9
MBI14_g42478_MAGBIO Magnolia biondii HOM05D000913 ORTHO05D000687 6.3e-07 58.2 72 44.4
Sabra16G0317700 Salix brachista HOM05D000913 ORTHO05D000687 6.3e-07 58.2 60 51.7
SalBow8G3675 Salvia bowleyana HOM05D000913 ORTHO05D000687 6.3e-07 58.2 113 38.1
arahy.Tifrunner.gnm1.ann1.FE2NQF Arachis hypogaea HOM05D000913 ORTHO05D000687 8.2e-07 57.8 120 35.8
COL.COLO4_09796 Corchorus olitorius HOM05D000913 ORTHO05D000687 8.2e-07 57.8 79 43.0
DCAR_008754 Daucus carota HOM05D000913 ORTHO05D000687 8.2e-07 57.8 69 47.8
Gohir.D05G386200 Gossypium hirsutum HOM05D000913 ORTHO05D000687 8.2e-07 57.8 73 43.8
Gorai.009G452900 Gossypium raimondii HOM05D000913 ORTHO05D000687 8.2e-07 57.8 73 45.2
MBI15_g37255_MAGBIO Magnolia biondii HOM05D000913 ORTHO05D000687 8.2e-07 57.8 78 43.6
Thecc.07G006200 Theobroma cacao HOM05D000913 ORTHO05D000687 8.2e-07 57.8 73 45.2
AT3G20180 Arabidopsis thaliana HOM05D000913 ORTHO05D000687 1.1e-06 57.4 79 40.5
DCAR_019659 Daucus carota HOM05D000913 ORTHO05D000687 1.1e-06 57.4 92 39.1
Thecc.09G251800 Theobroma cacao HOM05D000913 ORTHO05D000687 1.1e-06 57.4 72 43.1
BcaC05g30196 Brassica carinata HOM05D014993 ORTHO05D000687 1.4e-06 57.0 72 50.0
DCAR_021080 Daucus carota HOM05D000913 ORTHO05D000687 1.4e-06 57.0 72 41.7
Nn5g28777 Nelumbo nucifera HOM05D000913 ORTHO05D000687 1.4e-06 57.0 83 38.6
Cpa.g.sc107.117 Carica papaya HOM05D000607 ORTHO05D000518 1.8e-06 56.6 77 45.5
Cpa.g.sc12.187 Carica papaya HOM05D000913 ORTHO05D000687 1.8e-06 56.6 80 41.2
Cfa018626 Carpinus fangiana HOM05D000913 ORTHO05D000687 1.8e-06 56.6 73 38.4
DCAR_015686 Daucus carota HOM05D000913 ORTHO05D000687 1.8e-06 56.6 76 43.4
GSVIVG01014798001 Vitis vinifera HOM05D000913 ORTHO05D000687 1.8e-06 56.6 73 43.8
CSS0038172 Camellia sinensis var. sinensis HOM05D000913 ORTHO05D000687 2.4e-06 56.2 145 32.4
Dinv03822 Davidia involucrata HOM05D000913 ORTHO05D000687 2.4e-06 56.2 123 35.8
FAN16G2023 Fragaria x ananassa HOM05D000913 ORTHO05D000687 2.4e-06 56.2 72 43.1
Gohir.A04G003500 Gossypium hirsutum HOM05D000913 ORTHO05D000687 2.4e-06 56.2 73 42.5
Gohir.D05G378500 Gossypium hirsutum HOM05D000913 ORTHO05D000687 2.4e-06 56.2 101 36.6
MBI14_g16765_MAGBIO Magnolia biondii HOM05D000913 ORTHO05D000687 2.4e-06 56.2 72 48.6
MD03G1039000 Malus domestica HOM05D000913 ORTHO05D000687 2.4e-06 56.2 103 38.8
MD03G1039100 Malus domestica HOM05D000913 ORTHO05D000687 2.4e-06 56.2 92 38.0
Cc02_g37590 Coffea canephora HOM05D000913 ORTHO05D000687 3.1e-06 55.8 72 41.7
DCAR_008755 Daucus carota HOM05D000913 ORTHO05D000687 3.1e-06 55.8 94 41.5
ECA236G4318 Erigeron canadensis HOM05D000913 ORTHO05D000687 3.1e-06 55.8 81 44.4
Medtr3g082250 Medicago truncatula HOM05D000913 ORTHO05D000687 3.1e-06 55.8 73 45.2
QL08p001984 Quercus lobata HOM05D000913 ORTHO05D000687 3.1e-06 55.8 119 32.8
QL08p005455 Quercus lobata HOM05D000913 ORTHO05D000687 3.1e-06 55.8 73 46.6
Dinv03824 Davidia involucrata HOM05D000913 ORTHO05D000687 4.1e-06 55.5 78 43.6
Gorai.009G452700 Gossypium raimondii HOM05D000913 ORTHO05D000687 4.1e-06 55.5 73 42.5
HanXRQChr03g0081521 Helianthus annuus HOM05D000041 ORTHO05D000452 4.1e-06 55.5 84 41.7
HanXRQChr11g0329551 Helianthus annuus HOM05D000913 ORTHO05D000687 4.1e-06 55.5 83 45.8
Lalb_Chr04g0250241 Lupinus albus HOM05D000913 ORTHO05D000687 4.1e-06 55.5 71 45.1
SalBow8G4274 Salvia bowleyana HOM05D000913 ORTHO05D000687 4.1e-06 55.5 80 45.0
SalBow8G4609 Salvia bowleyana HOM05D000913 ORTHO05D000687 4.1e-06 55.5 80 45.0
Thecc.07G006400 Theobroma cacao HOM05D000913 ORTHO05D000687 4.1e-06 55.5 115 38.3
Atru.chr1.4051 Acer truncatum HOM05D000913 ORTHO05D000687 5.3e-06 55.1 75 45.3
CiPaw.10G022600 Carya illinoinensis HOM05D000913 ORTHO05D000687 5.3e-06 55.1 81 44.4
FAN21G3003 Fragaria x ananassa HOM05D000913 ORTHO05D000687 5.3e-06 55.1 84 39.3
QL08p002131 Quercus lobata HOM05D000913 ORTHO05D000687 5.3e-06 55.1 72 44.4
Aqoxy4G01742 Aquilegia oxysepala HOM05D000913 ORTHO05D000687 6.9e-06 54.7 78 39.7
arahy.Tifrunner.gnm1.ann1.J75ZHQ Arachis hypogaea HOM05D000913 ORTHO05D000687 6.9e-06 54.7 81 39.5
Haze_23588 Corylus avellana HOM05D000913 ORTHO05D000687 6.9e-06 54.7 73 38.4
Duzib213G0636 Durio zibethinus HOM05D000913 ORTHO05D000687 6.9e-06 54.7 90 38.9
Gohir.A04G008700 Gossypium hirsutum HOM05D000913 ORTHO05D000687 6.9e-06 54.7 107 35.5
SGA_v2.0_scaffold4G02124 Striga asiatica HOM05D000913 ORTHO05D000687 6.9e-06 54.7 92 42.4
Haze_10216 Corylus avellana HOM05D000913 ORTHO05D000687 9.1e-06 54.3 73 37.0
Duzib213G0455 Durio zibethinus HOM05D000913 ORTHO05D000687 9.1e-06 54.3 76 46.1
Duzib268G1311 Durio zibethinus HOM05D000913 ORTHO05D000687 9.1e-06 54.3 126 34.9
HanXRQChr01g0023431 Helianthus annuus HOM05D000913 ORTHO05D000687 9.1e-06 54.3 95 41.1
HanXRQChr01g0023451 Helianthus annuus HOM05D000913 ORTHO05D000687 9.1e-06 54.3 95 41.1
HanXRQChr04g0126321 Helianthus annuus HOM05D000913 ORTHO05D000687 9.1e-06 54.3 83 42.2
Lsat_1_v5_gn_7_98121 Lactuca sativa HOM05D000913 ORTHO05D000687 9.1e-06 54.3 76 44.7
MBI14_g17948_MAGBIO Magnolia biondii HOM05D000913 ORTHO05D000687 9.1e-06 54.3 70 45.7
Oeu049439.1 Olea europaea HOM05D000913 ORTHO05D000687 9.1e-06 54.3 82 40.2
QL08p002232 Quercus lobata HOM05D000913 ORTHO05D000687 9.1e-06 54.3 135 33.3
RcHm_v2.0_Chr5g0042661 Rosa chinensis HOM05D000913 ORTHO05D000687 9.1e-06 54.3 74 43.2


User provided reference genes

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