Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G63820 Arabidopsis lyrata HOM05D007771 ORTHO05D009850 3.7e-34 147.5 68 100.0
BcaB04g16929 Brassica carinata HOM05D007771 ORTHO05D009850 1.2e-29 132.5 69 85.5
BcaC01g01562 Brassica carinata HOM05D007771 ORTHO05D009850 2.7e-29 131.3 69 85.5
A08p00340 Brassica napus HOM05D007771 ORTHO05D009850 2.7e-29 131.3 69 85.5
BolC3t21615H Brassica oleracea HOM05D007771 ORTHO05D009850 2.7e-29 131.3 69 85.5
BraA08t32092Z Brassica rapa HOM05D007771 ORTHO05D009850 3.6e-29 131.0 69 84.1
C03p93160 Brassica napus HOM05D007771 ORTHO05D009850 1.0e-28 129.4 69 85.5
CARHR045420 Cardamine hirsuta HOM05D007771 ORTHO05D009850 5.7e-27 123.6 65 81.5
AT3G13275 Arabidopsis thaliana HOM05D007771 ORTHO05D009850 5.9e-24 113.6 68 75.0
Carub.0003s1266 Capsella rubella HOM05D007771 ORTHO05D009850 1.0e-23 112.8 65 76.9
Carub.0001s4425 Capsella rubella HOM05D007771 ORTHO05D009850 3.8e-23 110.9 64 73.4
AL3G25100 Arabidopsis lyrata HOM05D007771 ORTHO05D009850 5.0e-23 110.5 64 76.6
CARHR087900 Cardamine hirsuta HOM05D007771 ORTHO05D009850 1.1e-22 109.4 64 73.4
Sp3g11480 Schrenkiella parvula HOM05D007771 ORTHO05D009850 1.5e-22 109.0 63 76.2
BolC3t16896H Brassica oleracea HOM05D007771 ORTHO05D009850 3.2e-22 107.8 64 73.4
A03p38110 Brassica napus HOM05D004608 ORTHO05D006533 5.5e-22 107.1 64 73.4
C03p46260 Brassica napus HOM05D007771 ORTHO05D009850 5.5e-22 107.1 64 71.9
Thhalv10022324m.g Eutrema salsugineum HOM05D007771 ORTHO05D009850 1.6e-21 105.5 65 70.8
BcaC05g29197 Brassica carinata HOM05D007771 ORTHO05D009850 2.7e-21 104.8 60 75.0
C05p54690 Brassica napus HOM05D007771 ORTHO05D009850 2.7e-21 104.8 60 75.0
BolC5t34139H Brassica oleracea HOM05D007771 ORTHO05D009850 2.7e-21 104.8 60 75.0
A05p36330 Brassica napus HOM05D007771 ORTHO05D009850 1.0e-20 102.8 61 73.8
BcaB06g25475 Brassica carinata HOM05D007771 ORTHO05D009850 1.8e-20 102.1 63 73.0
BolC1t05126H Brassica oleracea HOM05D007771 ORTHO05D009850 4.0e-20 100.9 61 75.4
BraA05t22434Z Brassica rapa HOM05D007771 ORTHO05D009850 6.8e-20 100.1 60 75.0
A01p40280 Brassica napus HOM05D004608 ORTHO05D006533 2.6e-19 98.2 63 69.8
BraA01t04064Z Brassica rapa HOM05D004608 ORTHO05D006533 2.6e-19 98.2 63 69.8
C01p51800 Brassica napus HOM05D004608 ORTHO05D006533 1.7e-18 95.5 61 70.5
BraA03t12964Z Brassica rapa HOM05D004608 ORTHO05D006533 2.4e-17 91.7 57 71.9
Gohir.D05G386700 Gossypium hirsutum HOM05D007771 ORTHO05D009850 4.1e-17 90.9 65 66.2
Manes.02G224000 Manihot esculenta HOM05D007771 ORTHO05D009850 6.5e-15 83.6 70 61.4
Eucgr.F03660 Eucalyptus grandis HOM05D007771 ORTHO05D009850 1.5e-14 82.4 66 62.1
Glyma.14G010700 Glycine max HOM05D007771 ORTHO05D009850 1.9e-14 82.0 65 64.6
Thecc.07G005300 Theobroma cacao HOM05D007771 ORTHO05D009850 1.9e-14 82.0 68 60.3
MD03G1039700 Malus domestica HOM05D007771 ORTHO05D009850 4.2e-14 80.9 69 56.5
QL08p001590 Quercus lobata HOM05D007771 ORTHO05D009850 5.5e-14 80.5 67 62.7
arahy.Tifrunner.gnm1.ann1.29L1CF Arachis hypogaea HOM05D007771 ORTHO05D009850 2.1e-13 78.6 70 60.0
arahy.Tifrunner.gnm1.ann1.0J0D7Z Arachis hypogaea HOM05D007771 ORTHO05D009850 2.7e-13 78.2 69 58.0
TWI39G0067 Tripterygium wilfordii HOM05D007771 ORTHO05D009850 2.7e-13 78.2 65 64.6
Glyma.02G303200 Glycine max HOM05D007771 ORTHO05D009850 3.6e-13 77.8 65 58.5
Cfa016941 Carpinus fangiana HOM05D007771 ORTHO05D009850 1.0e-12 76.3 64 60.9
Cc05_g15490 Coffea canephora HOM05D007771 ORTHO05D009850 1.0e-12 76.3 69 59.4
COL.COLO4_07761 Corchorus olitorius HOM05D007771 ORTHO05D009850 1.0e-12 76.3 53 62.3
HanXRQChr03g0077771 Helianthus annuus HOM05D007771 ORTHO05D009850 1.0e-12 76.3 64 54.7
LjContig00081g0001678 Lotus japonicus HOM05D007771 ORTHO05D009850 1.0e-12 76.3 65 61.5
Medtr5g096780 Medicago truncatula HOM05D007771 ORTHO05D009850 1.0e-12 76.3 65 55.4
Gohir.A04G003000 Gossypium hirsutum HOM05D007771 ORTHO05D009850 1.4e-12 75.9 58 63.8
Gorai.009G453400 Gossypium raimondii HOM05D007771 ORTHO05D009850 1.4e-12 75.9 58 63.8
Potri.001G469401 Populus trichocarpa HOM05D007771 ORTHO05D009850 1.4e-12 75.9 74 62.2
MD11G1040400 Malus domestica HOM05D007771 ORTHO05D009850 2.3e-12 75.1 72 52.8
RcHm_v2.0_Chr5g0075191 Rosa chinensis HOM05D007771 ORTHO05D009850 2.3e-12 75.1 62 58.1
MELO3C014083.2 Cucumis melo HOM05D007771 ORTHO05D009850 5.2e-12 73.9 69 60.9
Atru.chr2.3846 Acer truncatum HOM05D007771 ORTHO05D009850 6.8e-12 73.6 70 55.7
TAR627G1191 Trochodendron aralioides HOM05D007771 ORTHO05D009850 8.8e-12 73.2 68 60.3
Phvul.008G282400 Phaseolus vulgaris HOM05D007771 ORTHO05D009850 1.2e-11 72.8 65 58.5
Potri.005G061200 Populus trichocarpa HOM05D007771 ORTHO05D009850 1.2e-11 72.8 73 49.3
Potri.007G107500 Populus trichocarpa HOM05D007771 ORTHO05D009850 1.2e-11 72.8 65 52.3
CANSAT11G2411 Cannabis sativa HOM05D007771 ORTHO05D009850 1.5e-11 72.4 65 53.8
Manes.05G206300 Manihot esculenta HOM05D007771 ORTHO05D009850 4.4e-11 70.9 69 55.1
Sopen07g034140 Solanum pennellii HOM05D007771 ORTHO05D009850 5.7e-11 70.5 67 53.7
Sed0026400 Sechium edule HOM05D007771 ORTHO05D009850 7.5e-11 70.1 69 50.7
ClCG10G004130 Citrullus lanatus HOM05D007771 ORTHO05D009850 9.8e-11 69.7 65 58.5
Duzib268G1197 Durio zibethinus HOM05D007771 ORTHO05D009850 9.8e-11 69.7 68 52.9
MBI15_g00878_MAGBIO Magnolia biondii HOM05D007771 ORTHO05D009850 9.8e-11 69.7 67 52.2
Medtr5g096760 Medicago truncatula HOM05D007771 ORTHO05D009850 9.8e-11 69.7 65 52.3
Potri.011G166250 Populus trichocarpa HOM05D007771 ORTHO05D009850 9.8e-11 69.7 75 57.3
TPR.G1243 Trifolium pratense HOM05D007771 ORTHO05D009850 9.8e-11 69.7 67 53.7
arahy.Tifrunner.gnm1.ann1.YJMT2M Arachis hypogaea HOM05D007771 ORTHO05D009850 1.3e-10 69.3 76 52.6
Migut.H01728 Erythranthe guttata HOM05D007771 ORTHO05D009850 1.3e-10 69.3 65 50.8
Lalb_Chr17g0349031 Lupinus albus HOM05D007771 ORTHO05D009850 1.3e-10 69.3 65 53.8
CiPaw.11G208800 Carya illinoinensis HOM05D007771 ORTHO05D009850 2.8e-10 68.2 64 59.4
HanXRQChr13g0409141 Helianthus annuus HOM05D007771 ORTHO05D009850 3.7e-10 67.8 46 60.9
Ciclev10010110m.g Citrus clementina HOM05D007771 ORTHO05D009850 1.1e-09 66.2 72 50.0
PGR083G2136 Punica granatum HOM05D007771 ORTHO05D009850 2.4e-09 65.1 46 69.6
PGSC0003DMG400022153 Solanum tuberosum HOM05D007771 ORTHO05D009850 4.1e-09 64.3 43 65.1
FAN11G2649 Fragaria x ananassa HOM05D007771 ORTHO05D009850 5.4e-09 63.9 40 75.0
Zm00001eb316200 Zea mays HOM05D007771 ORTHO05D009850 5.4e-09 63.9 67 50.7
Nn1g08434 Nelumbo nucifera HOM05D007771 ORTHO05D009850 9.1e-09 63.2 46 65.2
EL10Ac4g07508 Beta vulgaris HOM05D007771 ORTHO05D009850 1.2e-08 62.8 48 58.3
Solyc07g065940.1 Solanum lycopersicum HOM05D007771 ORTHO05D009850 1.2e-08 62.8 61 50.8
PGSC0003DMG400014434 Solanum tuberosum HOM05D007771 ORTHO05D009850 1.6e-08 62.4 40 62.5
Os09g0480100 Oryza sativa ssp. japonica HOM05D007771 ORTHO05D009850 1.7e-07 58.9 70 42.9
Gohir.D13G133100 Gossypium hirsutum HOM05D007771 ORTHO05D009850 5.0e-07 57.4 68 47.1
CAN.G623.52 Capsicum annuum HOM05D007771 ORTHO05D009850 6.6e-07 57.0 37 73.0
Gorai.013G149400 Gossypium raimondii HOM05D007771 ORTHO05D009850 1.1e-06 56.2 68 47.1
Gohir.A13G130128 Gossypium hirsutum HOM05D007771 ORTHO05D009850 1.9e-06 55.5 64 46.9
DCAR_013772 Daucus carota HOM05D007771 ORTHO05D009850 9.5e-06 53.1 41 58.5


User provided reference genes

Program Settings