Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G63810 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 1.1e-236 823.2 480 100.0
AT2G02770 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 4.4e-81 306.2 272 65.8
AT4G00920 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.3e-77 294.7 318 62.3
AL1G64360 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 2.6e-41 174.1 202 60.9
AL6G21220 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 4.4e-41 173.3 113 85.0
AT4G00580 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 2.1e-30 137.9 181 51.9
AL8G32350 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 4.9e-24 116.7 66 92.4
AT1G30060 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.4e-23 115.2 93 63.4
Carub.0003s3440 Capsella rubella HOM05D008497 ORTHO05D003355 1.2e-22 112.1 338 31.1
AT2G01800 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.1e-20 105.5 148 54.7
AT4G00930 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.6e-19 101.7 210 35.7
Sp7g04810 Schrenkiella parvula HOM05D008497 ORTHO05D003355 8.1e-19 99.4 133 43.6
Sp7g05260 Schrenkiella parvula HOM05D008497 ORTHO05D003355 2.4e-18 97.8 224 34.8
CARHR215860 Cardamine hirsuta HOM05D008497 ORTHO05D003355 9.0e-18 95.9 228 36.8
AL7G45710 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 1.3e-16 92.0 236 34.3
Carub.0007s3238 Capsella rubella HOM05D008497 ORTHO05D003355 1.9e-15 88.2 215 32.1
AT5G37190 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 5.5e-15 86.7 269 30.1
BcaB07g31396 Brassica carinata HOM05D008497 ORTHO05D003355 1.6e-14 85.1 149 37.6
Thhalv10023229m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 2.1e-14 84.7 258 30.6
Sp2g01280 Schrenkiella parvula HOM05D008497 ORTHO05D027096 2.7e-14 84.3 288 31.6
Thhalv10028078m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 3.5e-14 84.0 165 36.4
Carub.0001s4470 Capsella rubella HOM05D008497 ORTHO05D003355 4.6e-14 83.6 205 33.7
Sc14g0008880 Simmondsia chinensis HOM05D005863 ORTHO05D003355 5.1e-13 80.1 107 43.9
TAR629G1344 Trochodendron aralioides HOM05D005863 ORTHO05D003355 1.1e-12 79.0 93 45.2
BcaC04g22481 Brassica carinata HOM05D008497 ORTHO05D003355 1.9e-12 78.2 242 33.1
Sp7g04860 Schrenkiella parvula HOM05D008497 ORTHO05D003355 1.9e-12 78.2 238 33.2
BolC9t54783H Brassica oleracea HOM05D008497 ORTHO05D003355 2.5e-12 77.8 243 32.9
Duzib268G1590 Durio zibethinus HOM05D005863 ORTHO05D003355 2.5e-12 77.8 102 42.2
BcaC06g36075 Brassica carinata HOM05D008497 ORTHO05D003355 3.3e-12 77.4 291 29.9
C07p08170 Brassica napus HOM05D008497 ORTHO05D003355 3.3e-12 77.4 291 29.9
BolC7t41233H Brassica oleracea HOM05D008497 ORTHO05D003355 3.3e-12 77.4 291 29.9
Psat5g094240 Pisum sativum HOM05D013281 ORTHO05D003355 5.6e-12 76.6 97 41.2
Duzib251G0242 Durio zibethinus HOM05D005863 ORTHO05D003355 9.6e-12 75.9 102 42.2
THA.LOC104825539 Tarenaya hassleriana HOM05D005863 ORTHO05D003355 9.6e-12 75.9 88 44.3
BraA01t02635Z Brassica rapa HOM05D008497 ORTHO05D003355 1.6e-11 75.1 283 31.1
PGR031G1574 Punica granatum HOM05D005863 ORTHO05D003355 1.6e-11 75.1 96 42.7
Rhsim12G0037600 Rhododendron simsii HOM05D005863 ORTHO05D003355 1.6e-11 75.1 102 41.2
Thecc.02G268600 Theobroma cacao HOM05D005863 ORTHO05D003355 1.6e-11 75.1 102 42.2
A09p15560 Brassica napus HOM05D008497 ORTHO05D003355 2.1e-11 74.7 244 32.8
BolC4t24461H Brassica oleracea HOM05D008497 ORTHO05D003355 2.1e-11 74.7 97 43.3
BraA09t37196Z Brassica rapa HOM05D008497 ORTHO05D003355 2.1e-11 74.7 244 32.8
C09p18810 Brassica napus HOM05D008497 ORTHO05D003355 2.8e-11 74.3 241 32.0
Cpa.g.sc369.6 Carica papaya HOM05D005863 ORTHO05D003355 2.8e-11 74.3 87 44.8
BcaC02g10405 Brassica carinata HOM05D008497 ORTHO05D003355 4.8e-11 73.6 91 42.9
C04p29310 Brassica napus HOM05D008497 ORTHO05D003355 4.8e-11 73.6 91 42.9
PGR102G1092 Punica granatum HOM05D005863 ORTHO05D003355 4.8e-11 73.6 111 38.7
Haze_12305 Corylus avellana HOM05D005863 ORTHO05D003355 8.1e-11 72.8 111 39.6
Gorai.005G174200 Gossypium raimondii HOM05D005863 ORTHO05D003355 8.1e-11 72.8 102 39.2
DCAR_024069 Daucus carota HOM05D005863 ORTHO05D003355 1.4e-10 72.0 80 46.2
Nn4g22491 Nelumbo nucifera HOM05D005863 ORTHO05D003355 1.8e-10 71.6 91 40.7
Sed0006554 Sechium edule HOM05D005863 ORTHO05D003355 1.8e-10 71.6 85 47.1
COL.COLO4_23547 Corchorus olitorius HOM05D005863 ORTHO05D003355 2.4e-10 71.2 102 38.2
Gohir.A03G131400 Gossypium hirsutum HOM05D005863 ORTHO05D003355 2.4e-10 71.2 102 38.2
Lsat_1_v5_gn_8_150460 Lactuca sativa HOM05D005863 ORTHO05D003355 4.0e-10 70.5 86 41.9
Sabra10G0018100 Salix brachista HOM05D005863 ORTHO05D003355 4.0e-10 70.5 99 38.4
QL03p055923 Quercus lobata HOM05D005863 ORTHO05D003355 5.3e-10 70.1 121 38.0
VMungo1383G2020 Vigna mungo HOM05D013281 ORTHO05D003355 5.3e-10 70.1 85 42.4
Potri.010G052200 Populus trichocarpa HOM05D005863 ORTHO05D003355 6.9e-10 69.7 99 38.4
vmacro01106 Vaccinium macrocarpon HOM05D005863 ORTHO05D003355 6.9e-10 69.7 139 35.3
Dinv14763 Davidia involucrata HOM05D005863 ORTHO05D003355 1.2e-09 68.9 95 37.9
Manes.13G019100 Manihot esculenta HOM05D005863 ORTHO05D003355 1.2e-09 68.9 79 41.8
Manes.12G018600 Manihot esculenta HOM05D005863 ORTHO05D003355 1.5e-09 68.6 81 40.7
Ciclev10030561m.g Citrus clementina HOM05D005863 ORTHO05D003355 2.0e-09 68.2 87 42.5
CiPaw.11G070600 Carya illinoinensis HOM05D005863 ORTHO05D003355 5.8e-09 66.6 106 38.7
HanXRQChr08g0208041 Helianthus annuus HOM05D005863 ORTHO05D003355 5.8e-09 66.6 102 35.3
MD16G1107000 Malus domestica HOM05D005863 ORTHO05D017031 5.8e-09 66.6 119 37.8
Nitab4.5_0011762g0010 Nicotiana tabacum HOM05D012928 ORTHO05D003355 7.6e-09 66.2 92 35.9
ClCG08G017500 Citrullus lanatus HOM05D005863 ORTHO05D003355 1.0e-08 65.9 95 44.2
Glyma.11G245500 Glycine max HOM05D013281 ORTHO05D003355 1.0e-08 65.9 86 41.9
Lj6A818T39 Lonicera japonica HOM05D005863 ORTHO05D003355 1.0e-08 65.9 180 30.0
Peaxi162Scf00128g00645 Petunia axillaris HOM05D012928 ORTHO05D003355 1.0e-08 65.9 111 30.6
THA.LOC104807749 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 1.0e-08 65.9 238 28.6
Atru.chr11.2201 Acer truncatum HOM05D005863 ORTHO05D003355 1.3e-08 65.5 80 42.5
Aqoxy3G01339 Aquilegia oxysepala HOM05D005863 ORTHO05D003355 1.3e-08 65.5 234 27.4
Nitab4.5_0007393g0020 Nicotiana tabacum HOM05D012928 ORTHO05D003355 1.7e-08 65.1 92 38.0
Nitab4.5_0000041g0190 Nicotiana tabacum HOM05D012928 ORTHO05D003355 2.2e-08 64.7 92 38.0
HanXRQChr01g0023571 Helianthus annuus HOM05D005863 ORTHO05D003355 2.9e-08 64.3 79 38.0
Sed0020016 Sechium edule HOM05D005863 ORTHO05D003355 3.8e-08 63.9 79 41.8
GSVIVG01000596001 Vitis vinifera HOM05D005863 ORTHO05D003355 3.8e-08 63.9 87 41.4
Aa31LG7G9560 Aethionema arabicum HOM05D008497 ORTHO05D003355 4.9e-08 63.5 151 31.1
THA.LOC104808433 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 4.9e-08 63.5 91 37.4
THA.LOC104825537 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 4.9e-08 63.5 91 37.4
Thhalv10028182m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 6.5e-08 63.2 84 33.3
MD13G1106900 Malus domestica HOM05D005863 ORTHO05D017031 6.5e-08 63.2 104 39.4
CARHR174360 Cardamine hirsuta HOM05D005863 ORTHO05D003355 8.4e-08 62.8 57 50.9
CsaV3_2G025110 Cucumis sativus L. HOM05D005863 ORTHO05D003355 1.1e-07 62.4 162 32.1
SalBow2G2700 Salvia bowleyana HOM05D005863 ORTHO05D003355 1.4e-07 62.0 84 38.1
ATR0824G200 Amborella trichopoda HOM05D005863 ORTHO05D003355 1.9e-07 61.6 162 29.6
PGSC0003DMG400010741 Solanum tuberosum HOM05D012928 ORTHO05D003355 1.9e-07 61.6 102 28.4
AUR62024201 Chenopodium quinoa HOM05D025851 ORTHO05D044019 2.5e-07 61.2 97 37.1
MSTRG.544 Avicennia marina HOM05D005863 ORTHO05D003355 5.5e-07 60.1 68 44.1
THA.LOC104825538 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 5.5e-07 60.1 94 38.3
SGA_v2.0_scaffold124G33641 Striga asiatica HOM05D005863 ORTHO05D003355 7.1e-07 59.7 70 37.1
Aa31sc26G130 Aethionema arabicum HOM05D008497 ORTHO05D003355 9.3e-07 59.3 95 36.8
Cc05_g15010 Coffea canephora HOM05D005863 ORTHO05D003355 9.3e-07 59.3 104 33.7
MELO3C010709.2 Cucumis melo HOM05D005863 ORTHO05D003355 9.3e-07 59.3 177 30.5
Thhalv10027990m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 9.3e-07 59.3 88 33.0
FAN07G0148 Fragaria x ananassa HOM05D005863 ORTHO05D017031 9.3e-07 59.3 112 35.7
FAN12G0897 Fragaria x ananassa HOM05D005863 ORTHO05D017031 9.3e-07 59.3 88 40.9
MSTRG.7960 Avicennia marina HOM05D005863 ORTHO05D003355 1.2e-06 58.9 250 26.0
Phvul.001G257200 Phaseolus vulgaris HOM05D013281 ORTHO05D003355 1.2e-06 58.9 216 27.8
Solyc05g014130.3 Solanum lycopersicum HOM05D012928 ORTHO05D003355 1.2e-06 58.9 80 37.5
Sopen05g009140 Solanum pennellii HOM05D012928 ORTHO05D003355 1.2e-06 58.9 80 37.5
TWI36G0003 Tripterygium wilfordii HOM05D005863 ORTHO05D003355 1.2e-06 58.9 208 26.4
ECA233G0282 Erigeron canadensis HOM05D007119 ORTHO05D009220 1.6e-06 58.5 72 37.5
Potri.007G102500 Populus trichocarpa HOM05D005863 ORTHO05D003355 1.6e-06 58.5 94 35.1
Glyma.18G011700 Glycine max HOM05D013281 ORTHO05D003355 2.1e-06 58.2 192 29.2
Sc16g0008130 Simmondsia chinensis HOM05D005863 ORTHO05D003355 3.5e-06 57.4 79 35.4
SGA_v2.0_scaffold171G38860 Striga asiatica HOM05D005863 ORTHO05D003355 4.6e-06 57.0 144 27.8
FAN22G1084 Fragaria x ananassa HOM05D005863 ORTHO05D017031 6.0e-06 56.6 88 39.8
FAN22G1483 Fragaria x ananassa HOM05D005863 ORTHO05D017031 6.0e-06 56.6 88 39.8
SEGI_35034 Sequoiadendron giganteum HOM05D005863 ORTHO05D003355 7.9e-06 56.2 163 30.1


User provided reference genes

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