Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G63740 Arabidopsis lyrata HOM05D006092 ORTHO05D007508 6.0e-83 310.8 162 100.0
AT1G55670 Arabidopsis thaliana HOM05D006092 ORTHO05D007508 7.3e-81 303.9 162 98.8
Thhalv10011835m.g Eutrema salsugineum HOM05D006092 ORTHO05D007508 2.4e-79 298.9 163 96.3
Carub.0001s4419 Capsella rubella HOM05D006092 ORTHO05D007508 3.4e-78 295.0 163 95.7
CARHR045350 Cardamine hirsuta HOM05D006092 ORTHO05D007508 9.9e-78 293.5 162 94.4
A05p17350 Brassica napus HOM05D006092 ORTHO05D007508 4.9e-77 291.2 162 92.6
BraA05t20631Z Brassica rapa HOM05D006092 ORTHO05D007508 4.9e-77 291.2 162 92.6
BcaC08g43644 Brassica carinata HOM05D006092 ORTHO05D007508 2.4e-76 288.9 163 93.3
C06p10630 Brassica napus HOM05D006092 ORTHO05D007508 2.4e-76 288.9 163 93.3
BolC6t36143H Brassica oleracea HOM05D006092 ORTHO05D007508 2.4e-76 288.9 163 93.3
A06p00060 Brassica napus HOM05D006092 ORTHO05D007508 2.7e-75 285.4 163 92.0
C03p93010 Brassica napus HOM05D006092 ORTHO05D007508 2.7e-75 285.4 163 92.0
BraA06t23221Z Brassica rapa HOM05D006092 ORTHO05D007508 2.7e-75 285.4 163 92.0
BcaC08g44210 Brassica carinata HOM05D006092 ORTHO05D007508 3.5e-75 285.0 163 91.4
BolC6t36815H Brassica oleracea HOM05D006092 ORTHO05D007508 3.5e-75 285.0 163 91.4
BcaC01g01548 Brassica carinata HOM05D006092 ORTHO05D007508 6.0e-75 284.3 163 91.4
BolC3t21605H Brassica oleracea HOM05D006092 ORTHO05D007508 6.0e-75 284.3 163 91.4
C06p16180 Brassica napus HOM05D006092 ORTHO05D007508 7.9e-75 283.9 163 90.8
BcaB02g10807 Brassica carinata HOM05D006092 ORTHO05D007508 1.3e-74 283.1 165 91.5
A08p00380 Brassica napus HOM05D006092 ORTHO05D007508 2.3e-74 282.3 162 93.2
BraA08t32097Z Brassica rapa HOM05D006092 ORTHO05D007508 2.3e-74 282.3 162 93.2
Aa31LG10G560 Aethionema arabicum HOM05D006092 ORTHO05D007508 5.6e-73 277.7 162 88.9
BcaB07g33193 Brassica carinata HOM05D006092 ORTHO05D007508 9.6e-73 276.9 164 89.6
BcaB04g16937 Brassica carinata HOM05D006092 ORTHO05D007508 1.4e-71 273.1 164 90.2
THA.LOC104822703 Tarenaya hassleriana HOM05D006092 ORTHO05D007508 1.4e-71 273.1 162 87.0
THA.LOC104810303 Tarenaya hassleriana HOM05D006092 ORTHO05D007508 2.4e-68 262.3 162 83.3
CARHR087970 Cardamine hirsuta HOM05D006092 ORTHO05D007508 4.8e-64 248.1 163 80.4
Thecc.07G001800 Theobroma cacao HOM05D006092 ORTHO05D007508 5.7e-57 224.6 162 74.7
Cpa.g.sc12.69 Carica papaya HOM05D006092 ORTHO05D007508 3.7e-56 221.9 160 73.8
Ciclev10009769m.g Citrus clementina HOM05D006092 ORTHO05D007508 2.4e-55 219.2 160 72.5
Sp1g41280 Schrenkiella parvula HOM05D006092 ORTHO05D007508 4.1e-55 218.4 162 76.5
Prupe.6G035200 Prunus persica HOM05D006092 ORTHO05D007508 5.3e-55 218.0 165 72.1
Lj3g0000125 Lotus japonicus HOM05D006092 ORTHO05D007508 9.0e-55 217.2 167 70.7
Lalb_Chr18g0048631 Lupinus albus HOM05D006092 ORTHO05D007508 1.2e-54 216.9 167 68.3
MD03G1042800 Malus domestica HOM05D006092 ORTHO05D007508 1.2e-54 216.9 164 74.4
RcHm_v2.0_Chr5g0074661 Rosa chinensis HOM05D006092 ORTHO05D007508 3.4e-54 215.3 160 75.0
FAN25G2470 Fragaria x ananassa HOM05D006092 ORTHO05D007508 4.5e-54 214.9 162 75.3
TWI39G1159 Tripterygium wilfordii HOM05D006092 ORTHO05D007508 1.3e-53 213.4 162 71.6
Atru.chr2.3894 Acer truncatum HOM05D006092 ORTHO05D007508 2.2e-53 212.6 163 73.0
FvH4_3g41620 Fragaria vesca HOM05D006092 ORTHO05D007508 2.2e-53 212.6 160 74.4
FAN11G0712 Fragaria x ananassa HOM05D006092 ORTHO05D007508 2.2e-53 212.6 160 74.4
Psat5g231800 Pisum sativum HOM05D006092 ORTHO05D007508 2.9e-53 212.2 167 68.3
Nn1g07635 Nelumbo nucifera HOM05D006092 ORTHO05D007508 6.5e-53 211.1 169 69.2
TWI38G1372 Tripterygium wilfordii HOM05D006092 ORTHO05D007508 6.5e-53 211.1 162 71.0
TPR.G16714 Trifolium pratense HOM05D006092 ORTHO05D007508 1.9e-52 209.5 168 68.5
QL08p000538 Quercus lobata HOM05D006092 ORTHO05D007508 4.2e-52 208.4 167 70.1
arahy.Tifrunner.gnm1.ann1.4PD0PP Arachis hypogaea HOM05D006092 ORTHO05D007508 5.5e-52 208.0 168 67.9
GSVIVG01014842001 Vitis vinifera HOM05D006092 ORTHO05D007508 5.5e-52 208.0 165 70.9
Glyma.04G112800 Glycine max HOM05D006092 ORTHO05D007508 2.1e-51 206.1 164 68.9
Phvul.005G004000 Phaseolus vulgaris HOM05D006092 ORTHO05D007508 2.1e-51 206.1 166 67.5
ECA246G4981 Erigeron canadensis HOM05D006092 ORTHO05D007508 2.7e-51 205.7 139 78.4
Gorai.009G454900 Gossypium raimondii HOM05D006092 ORTHO05D007508 2.7e-51 205.7 164 71.3
Haze_09914 Corylus avellana HOM05D006092 ORTHO05D007508 3.5e-51 205.3 166 71.1
unitig_37.g11908 Utricularia gibba HOM05D006092 ORTHO05D007508 6.1e-51 204.5 137 76.6
CDE05G1532 Ceratophyllum demersum HOM05D006092 ORTHO05D007508 7.9e-51 204.1 163 67.5
HanXRQChr08g0232881 Helianthus annuus HOM05D006092 ORTHO05D007508 1.0e-50 203.8 138 76.1
Ah.04g149440 Amaranthus hybridus HOM05D006092 ORTHO05D007508 1.3e-50 203.4 161 71.4
CDE11G0224 Ceratophyllum demersum HOM05D006092 ORTHO05D007508 1.8e-50 203.0 163 66.9
Gohir.D13G132000 Gossypium hirsutum HOM05D006092 ORTHO05D007508 1.8e-50 203.0 165 70.9
Aqoxy4G02265 Aquilegia oxysepala HOM05D006092 ORTHO05D007508 3.0e-50 202.2 162 69.8
Gohir.A04G001100 Gossypium hirsutum HOM05D006092 ORTHO05D007508 3.0e-50 202.2 164 70.7
Gorai.013G148000 Gossypium raimondii HOM05D006092 ORTHO05D007508 3.0e-50 202.2 165 70.9
ATR0751G135 Amborella trichopoda HOM05D006092 ORTHO05D007508 3.9e-50 201.8 164 68.9
CsaV3_3G004330 Cucumis sativus L. HOM05D006092 ORTHO05D007508 3.9e-50 201.8 161 70.8
Gohir.A13G128600 Gossypium hirsutum HOM05D006092 ORTHO05D007508 6.7e-50 201.1 165 70.3
HanXRQChr05g0160351 Helianthus annuus HOM05D006092 ORTHO05D007508 6.7e-50 201.1 136 75.0
EL10Ac3g07451 Beta vulgaris HOM05D006092 ORTHO05D007508 8.7e-50 200.7 160 70.6
Cfa016959 Carpinus fangiana HOM05D006092 ORTHO05D007508 8.7e-50 200.7 164 69.5
Lsat_1_v5_gn_5_381 Lactuca sativa HOM05D006092 ORTHO05D007508 8.7e-50 200.7 138 75.4
MBI15_g47946_MAGBIO Magnolia biondii HOM05D006092 ORTHO05D007508 8.7e-50 200.7 164 67.7
Manes.01G006400 Manihot esculenta HOM05D006092 ORTHO05D007508 1.1e-49 200.3 154 70.8
Rhsim04G0007400 Rhododendron simsii HOM05D006092 ORTHO05D007508 1.5e-49 199.9 135 74.8
Glyma.06G321900 Glycine max HOM05D006092 ORTHO05D007508 1.9e-49 199.5 156 69.2
VMungo1080G0991 Vigna mungo HOM05D006092 ORTHO05D007508 1.9e-49 199.5 164 65.9
ClCG10G004510 Citrullus lanatus HOM05D006092 ORTHO05D007508 2.5e-49 199.1 161 68.9
MELO3C014124.2 Cucumis melo HOM05D006092 ORTHO05D007508 2.5e-49 199.1 160 69.4
Eucgr.F03646 Eucalyptus grandis HOM05D006092 ORTHO05D007508 2.5e-49 199.1 165 68.5
SalBow8G3834 Salvia bowleyana HOM05D006092 ORTHO05D007508 4.3e-49 198.4 140 77.9
unitig_92.g28271 Utricularia gibba HOM05D006092 ORTHO05D007508 4.3e-49 198.4 136 76.5
MBI15_g47073_MAGBIO Magnolia biondii HOM05D006092 ORTHO05D007508 5.7e-49 198.0 164 68.3
Sabra16G0320400 Salix brachista HOM05D006092 ORTHO05D007508 5.7e-49 198.0 161 70.8
Nitab4.5_0000611g0110 Nicotiana tabacum HOM05D006092 ORTHO05D007508 7.4e-49 197.6 139 74.8
Nitab4.5_0000611g0120 Nicotiana tabacum HOM05D006092 ORTHO05D007508 7.4e-49 197.6 139 74.8
PGR031G3987 Punica granatum HOM05D006092 ORTHO05D007508 9.7e-49 197.2 159 67.9
CANSAT11G0425 Cannabis sativa HOM05D006092 ORTHO05D007508 1.3e-48 196.8 164 67.1
Migut.M01583 Erythranthe guttata HOM05D006092 ORTHO05D007508 1.3e-48 196.8 141 74.5
Sabra11G0138000 Salix brachista HOM05D006092 ORTHO05D007508 1.3e-48 196.8 158 68.4
Potri.001G471900 Populus trichocarpa HOM05D006092 ORTHO05D007508 1.6e-48 196.4 158 69.0
Potri.011G168700 Populus trichocarpa HOM05D006092 ORTHO05D007508 1.6e-48 196.4 155 69.7
Sc07g0002210 Simmondsia chinensis HOM05D006092 ORTHO05D007508 2.2e-48 196.1 168 64.9
Lj8P183T26 Lonicera japonica HOM05D006092 ORTHO05D007508 2.8e-48 195.7 108 87.0
Nitab4.5_0001622g0160 Nicotiana tabacum HOM05D006092 ORTHO05D007508 2.8e-48 195.7 139 74.1
Sed0026101 Sechium edule HOM05D006092 ORTHO05D007508 2.8e-48 195.7 158 66.5
PSO063G2976 Papaver somniferum HOM05D006092 ORTHO05D007508 4.8e-48 194.9 162 69.8
PSO782G4285 Papaver somniferum HOM05D006092 ORTHO05D007508 4.8e-48 194.9 162 69.8
Oeu006265.1 Olea europaea HOM05D006092 ORTHO05D007508 6.3e-48 194.5 142 73.2
PGSC0003DMG400022249 Solanum tuberosum HOM05D006092 ORTHO05D007508 1.1e-47 193.7 139 74.8
Sopen07g034330 Solanum pennellii HOM05D006092 ORTHO05D007508 1.4e-47 193.4 139 74.1
SGA_v2.0_scaffold186G40234 Striga asiatica HOM05D006092 ORTHO05D007508 1.8e-47 193.0 136 74.3
Solyc07g066150.1 Solanum lycopersicum HOM05D006092 ORTHO05D007508 2.4e-47 192.6 139 74.1
HPP92_022812 Vanilla planifolia HOM05D006092 ORTHO05D007508 3.1e-47 192.2 127 78.0
Oeu013004.1 Olea europaea HOM05D006092 ORTHO05D007508 9.0e-47 190.7 158 67.1
CAN.G623.73 Capsicum annuum HOM05D006092 ORTHO05D007508 1.5e-46 189.9 140 75.0
Medtr3g010000 Medicago truncatula HOM05D006092 ORTHO05D007508 7.7e-46 187.6 167 64.1
AUR62018553 Chenopodium quinoa HOM05D006092 ORTHO05D007508 2.2e-45 186.0 101 90.1
COL.COLO4_07787 Corchorus olitorius HOM05D006092 ORTHO05D007508 2.2e-45 186.0 101 91.1
Zm00001eb316290 Zea mays HOM05D006092 ORTHO05D007508 2.2e-45 186.0 148 67.6
AUR62020866 Chenopodium quinoa HOM05D006092 ORTHO05D007508 2.9e-45 185.7 108 85.2
MBI14_g12737_MAGBIO Magnolia biondii HOM05D006092 ORTHO05D007508 1.1e-44 183.7 165 63.6
Os09g0481200 Oryza sativa ssp. japonica HOM05D006092 ORTHO05D007508 9.4e-44 180.6 105 81.9
Sed0012341 Sechium edule HOM05D006092 ORTHO05D007508 9.4e-44 180.6 153 62.1
Zm00001eb101660 Zea mays HOM05D006092 ORTHO05D007508 4.6e-43 178.3 101 84.2
SEGI_13197 Sequoiadendron giganteum HOM05D006092 ORTHO05D007508 8.8e-42 174.1 138 68.8
Nitab4.5_0000611g0130 Nicotiana tabacum HOM05D006092 ORTHO05D007508 1.5e-38 163.3 131 67.2
Dinv40914 Davidia involucrata HOM05D006092 ORTHO05D007508 1.2e-35 153.7 80 92.5
SMO353G0046 Selaginella moellendorffii HOM05D006092 ORTHO05D007508 8.8e-34 147.5 97 72.2
CiPaw.11G210500 Carya illinoinensis HOM05D006092 ORTHO05D007508 1.1e-33 147.1 167 55.7
AagrBONN_evm.TU.Sc2ySwM_228.5128 Anthoceros agrestis HOM05D006092 ORTHO05D007508 2.2e-32 142.9 94 72.3
Pp3c9_15440 Physcomitrium patens HOM05D006092 ORTHO05D007508 3.7e-32 142.1 146 49.3
Pp3c15_5850 Physcomitrium patens HOM05D006092 ORTHO05D007508 9.1e-31 137.5 165 47.9
Mapoly0038s0054 Marchantia polymorpha HOM05D006092 ORTHO05D007508 1.2e-30 137.1 94 68.1
CBR_g28070 Chara braunii HOM05D006092 ORTHO05D007508 1.7e-29 133.3 164 46.3
TAR627G0509 Trochodendron aralioides HOM05D006092 ORTHO05D007508 2.3e-26 122.9 72 81.9
PRCOL_00006984 Prasinoderma coloniale HOM05D006092 ORTHO05D007508 3.2e-20 102.4 90 54.4
EL10Ac3g06625 Beta vulgaris HOM05D006092 ORTHO05D007508 2.6e-17 92.8 52 90.4
EL10Ac5g10941 Beta vulgaris HOM05D006092 ORTHO05D007508 2.6e-17 92.8 52 90.4
EL10As5g23536 Beta vulgaris HOM05D006092 ORTHO05D007508 3.4e-17 92.4 53 88.7
MCO01G478 Micromonas commoda HOM05D006092 ORTHO05D007508 1.7e-16 90.1 101 49.5
PGSC0003DMG400006702 Solanum tuberosum HOM05D006092 ORTHO05D007508 8.3e-16 87.8 125 49.6
Cre12.g560950 Chlamydomonas reinhardtii HOM05D006092 ORTHO05D007508 4.2e-12 75.5 99 41.4


User provided reference genes

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