Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G63370 Arabidopsis lyrata HOM05D000764 ORTHO05D004953 0.0e+00 3729.5 1907 100.0
AT1G55325 Arabidopsis thaliana HOM05D000764 ORTHO05D004953 0.0e+00 3540.7 1901 95.3
CARHR044980 Cardamine hirsuta HOM05D000764 ORTHO05D004953 0.0e+00 3427.1 1901 91.7
Carub.0001s4383 Capsella rubella HOM05D000764 ORTHO05D004953 0.0e+00 3426.0 1902 92.3
Sp1g41000 Schrenkiella parvula HOM05D000764 ORTHO05D004953 0.0e+00 3407.5 1902 92.0
Thhalv10011178m.g Eutrema salsugineum HOM05D000764 ORTHO05D004953 0.0e+00 3403.2 1902 91.7
BraA06t23242Z Brassica rapa HOM05D000764 ORTHO05D004953 0.0e+00 3249.5 1928 87.7
A06p00260 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 3246.4 1900 88.6
C06p10270 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 3239.5 1897 88.6
A05p17530 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 3228.0 1907 88.3
BraA05t20647Z Brassica rapa HOM05D000764 ORTHO05D004953 0.0e+00 3223.7 1938 87.1
BolC6t36102H Brassica oleracea HOM05D000764 ORTHO05D004953 0.0e+00 3212.2 1945 86.5
C06p15980 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 3196.4 1908 87.4
Aa31LG10G1120 Aethionema arabicum HOM05D000764 ORTHO05D004953 0.0e+00 3192.5 1919 86.0
BolC6t36790H Brassica oleracea HOM05D000764 ORTHO05D004953 0.0e+00 3189.1 1965 85.3
BcaC08g44192 Brassica carinata HOM05D000764 ORTHO05D004953 0.0e+00 2997.6 1905 83.6
THA.LOC104810327 Tarenaya hassleriana HOM05D000764 ORTHO05D004953 0.0e+00 2879.4 1914 77.7
THA.LOC104822680 Tarenaya hassleriana HOM05D000764 ORTHO05D004953 0.0e+00 2723.7 1906 74.1
Cfa009565 Carpinus fangiana HOM05D000764 ORTHO05D004953 0.0e+00 2388.6 1992 64.1
Atru.chr3.2095 Acer truncatum HOM05D000764 ORTHO05D004953 0.0e+00 2350.9 2039 62.0
Ciclev10014014m.g Citrus clementina HOM05D000764 ORTHO05D004953 0.0e+00 2347.4 1979 63.0
QL01p009034 Quercus lobata HOM05D000764 ORTHO05D004953 0.0e+00 2335.5 2010 62.8
Dinv33723 Davidia involucrata HOM05D000764 ORTHO05D004953 0.0e+00 2316.6 2025 61.9
Manes.14G121800 Manihot esculenta HOM05D000764 ORTHO05D004953 0.0e+00 2308.5 1993 62.6
CiPaw.13G176800 Carya illinoinensis HOM05D000764 ORTHO05D004953 0.0e+00 2307.3 1995 62.3
CSS0037597 Camellia sinensis var. sinensis HOM05D000764 ORTHO05D004953 0.0e+00 2271.1 1991 61.6
TWI32G0740 Tripterygium wilfordii HOM05D000764 ORTHO05D004953 0.0e+00 2269.6 1998 60.5
Potri.001G004200 Populus trichocarpa HOM05D000764 ORTHO05D004953 0.0e+00 2259.6 1987 61.8
Gohir.A08G227900 Gossypium hirsutum HOM05D000764 ORTHO05D004953 0.0e+00 2258.4 1960 62.6
Haze_22943 Corylus avellana HOM05D000764 ORTHO05D004953 0.0e+00 2257.6 2124 59.2
Duzib128G0342 Durio zibethinus HOM05D000764 ORTHO05D004953 0.0e+00 2256.1 1991 62.1
Potri.003G220800 Populus trichocarpa HOM05D000764 ORTHO05D004953 0.0e+00 2252.6 1988 61.0
Gorai.004G264800 Gossypium raimondii HOM05D000764 ORTHO05D004953 0.0e+00 2249.9 1961 62.4
Gohir.D08G248200 Gossypium hirsutum HOM05D000764 ORTHO05D004953 0.0e+00 2246.1 1973 62.1
TWI60G0851 Tripterygium wilfordii HOM05D000764 ORTHO05D004953 0.0e+00 2220.7 2005 59.8
arahy.Tifrunner.gnm1.ann1.W7TQKX Arachis hypogaea HOM05D000764 ORTHO05D004953 0.0e+00 2206.4 1974 61.3
MD03G1004100 Malus domestica HOM05D000764 ORTHO05D004953 0.0e+00 2206.0 1985 61.2
arahy.Tifrunner.gnm1.ann1.ML2TY5 Arachis hypogaea HOM05D000764 ORTHO05D004953 0.0e+00 2205.6 1975 61.4
Prupe.6G003600 Prunus persica HOM05D000764 ORTHO05D004953 0.0e+00 2201.8 1990 61.0
Lj6g0018726 Lotus japonicus HOM05D000764 ORTHO05D004953 0.0e+00 2195.6 1989 60.7
Phvul.001G269300 Phaseolus vulgaris HOM05D000764 ORTHO05D004953 0.0e+00 2189.5 1977 60.3
RcHm_v2.0_Chr5g0083741 Rosa chinensis HOM05D000764 ORTHO05D004953 0.0e+00 2189.1 1982 60.3
Glyma.18G000100 Glycine max HOM05D000764 ORTHO05D004953 0.0e+00 2187.1 1985 60.6
CANSAT11G1226 Cannabis sativa HOM05D000764 ORTHO05D004953 0.0e+00 2174.4 1996 59.9
CsaV3_1G041680 Cucumis sativus L. HOM05D000764 ORTHO05D004953 0.0e+00 2173.3 1978 59.7
Sabra01G0002900 Salix brachista HOM05D000764 ORTHO05D004953 0.0e+00 2162.1 2053 58.7
FvH4_3g45550 Fragaria vesca HOM05D000764 ORTHO05D004953 0.0e+00 2156.3 1982 60.3
TPR.G19327 Trifolium pratense HOM05D000764 ORTHO05D004953 0.0e+00 2152.1 1986 59.5
FAN11G0762 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2146.7 1997 59.8
Medtr3g083500 Medicago truncatula HOM05D000764 ORTHO05D004953 0.0e+00 2144.0 1972 59.6
PGR119G0322 Punica granatum HOM05D000764 ORTHO05D004953 0.0e+00 2142.5 1991 58.8
Glyma.11G256800 Glycine max HOM05D000764 ORTHO05D004953 0.0e+00 2139.0 1982 59.9
Ca_16376_v3 Cicer arietinum L. HOM05D000764 ORTHO05D004953 0.0e+00 2138.2 1974 59.5
Lalb_Chr23g0278471 Lupinus albus HOM05D000764 ORTHO05D004953 0.0e+00 2112.0 1993 59.3
Sabra03G0164300 Salix brachista HOM05D000764 ORTHO05D004953 0.0e+00 2110.9 1978 59.6
Eucgr.J01768 Eucalyptus grandis HOM05D000764 ORTHO05D004953 0.0e+00 2110.5 1988 58.8
ClCG03G014510 Citrullus lanatus HOM05D000764 ORTHO05D004953 0.0e+00 2103.6 2098 55.7
Sed0024847 Sechium edule HOM05D000764 ORTHO05D004953 0.0e+00 2100.9 1989 57.9
FAN21G0270 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2095.5 2028 58.2
FAN25G3812 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2093.5 1988 59.2
Psat5g101160 Pisum sativum HOM05D000764 ORTHO05D004953 0.0e+00 2073.1 1979 58.5
Cc01_g00030 Coffea canephora HOM05D000764 ORTHO05D004953 0.0e+00 2048.5 1983 57.6
EL10Ac4g10385 Beta vulgaris HOM05D000764 ORTHO05D004953 0.0e+00 2028.8 1973 56.1
MELO3C015581.2 Cucumis melo HOM05D000764 ORTHO05D004953 0.0e+00 2026.5 2101 54.7
MSTRG.16793 Avicennia marina HOM05D000764 ORTHO05D004953 0.0e+00 2025.8 1998 57.3
DCAR_029576 Daucus carota HOM05D000764 ORTHO05D004953 0.0e+00 2025.8 1986 55.6
CAN.G1237.43 Capsicum annuum HOM05D000764 ORTHO05D004953 0.0e+00 2016.9 2008 56.0
Sopen04g010120 Solanum pennellii HOM05D000764 ORTHO05D004953 0.0e+00 2015.7 2002 56.1
GSVIVG01025465001 Vitis vinifera HOM05D000764 ORTHO05D004953 0.0e+00 2009.6 1846 59.2
ECA233G5672 Erigeron canadensis HOM05D000764 ORTHO05D004953 0.0e+00 2009.2 1952 57.6
Solyc04g039950.4 Solanum lycopersicum HOM05D000764 ORTHO05D004953 0.0e+00 2004.9 1995 56.0
Rhsim03G0149100 Rhododendron simsii HOM05D000764 ORTHO05D004953 0.0e+00 2004.2 2025 56.2
Migut.L00381 Erythranthe guttata HOM05D000764 ORTHO05D004953 0.0e+00 2001.9 1989 56.9
Nn7g35865 Nelumbo nucifera HOM05D000764 ORTHO05D004953 0.0e+00 1995.3 2018 55.7
Hund07595 Selenicereus undatus HOM05D000764 ORTHO05D004953 0.0e+00 1984.9 2047 54.2
FAN16G0168 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 1984.1 2004 56.8
Aqoxy3G01104 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 0.0e+00 1981.8 1996 55.0
HanXRQChr13g0405791 Helianthus annuus HOM05D000764 ORTHO05D004953 0.0e+00 1979.1 1947 57.4
Oeu021897.1 Olea europaea HOM05D000764 ORTHO05D004953 0.0e+00 1944.5 2048 54.5
MBI11_g24613_MAGBIO Magnolia biondii HOM05D000764 ORTHO05D004953 0.0e+00 1903.3 1966 54.1
AUR62040904 Chenopodium quinoa HOM05D000764 ORTHO05D004953 0.0e+00 1888.2 1975 53.3
Dinv06519 Davidia involucrata HOM05D000764 ORTHO05D004953 0.0e+00 1877.8 1682 60.5
Lsat_1_v5_gn_6_53100 Lactuca sativa HOM05D000764 ORTHO05D004953 0.0e+00 1875.9 1985 54.9
PSO339G2492 Papaver somniferum HOM05D000764 ORTHO05D004953 0.0e+00 1822.8 2008 52.7
SGA_v2.0_scaffold58G20565 Striga asiatica HOM05D000764 ORTHO05D004953 0.0e+00 1812.3 2149 50.4
vmacro06919 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 0.0e+00 1771.5 1885 54.4
Peaxi162Scf00970g00016 Petunia axillaris HOM05D000764 ORTHO05D004953 0.0e+00 1758.8 1886 52.9
ATR0490G003 Amborella trichopoda HOM05D000764 ORTHO05D004953 0.0e+00 1680.2 2018 50.0
Nitab4.5_0000799g0100 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 1656.7 1761 52.5
Sc21g0002730 Simmondsia chinensis HOM05D000764 ORTHO05D004953 0.0e+00 1609.0 1668 54.2
Thecc.05G133300 Theobroma cacao HOM05D000764 ORTHO05D004953 0.0e+00 1575.5 1429 61.5
Nitab4.5_0003134g0150 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 1559.3 1736 51.7
Zm00001eb379470 Zea mays HOM05D000764 ORTHO05D004953 0.0e+00 1530.4 1964 48.0
Lj2A763G35 Lonicera japonica HOM05D000764 ORTHO05D004953 0.0e+00 1491.9 1688 52.1
SalBow6G5302 Salvia bowleyana HOM05D000764 ORTHO05D004953 0.0e+00 1479.5 1481 56.0
Hma1.2p1_0449F.1_g155090 Hydrangea macrophylla HOM05D000764 ORTHO05D004953 0.0e+00 1463.0 1357 58.4
VMungo1080G1230 Vigna mungo HOM05D000764 ORTHO05D004953 0.0e+00 1340.5 1216 59.4
SEGI_09587 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 0.0e+00 1226.5 1900 41.0
Nitab4.5_0005544g0060 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 1179.5 2026 40.1
SEGI_04814 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 0.0e+00 1155.6 1516 44.1
TAR623G0710 Trochodendron aralioides HOM05D000764 ORTHO05D004953 0.0e+00 1150.6 1189 55.3
SalBow6G3750 Salvia bowleyana HOM05D000764 ORTHO05D004953 0.0e+00 1136.3 1163 55.7
CDE10G0573 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 0.0e+00 1132.5 1408 46.9
Cpa.g.sc119.44 Carica papaya HOM05D000764 ORTHO05D004953 1.1e-305 1054.3 769 70.1
COL.COLO4_07280 Corchorus olitorius HOM05D000764 ORTHO05D004953 2.1e-291 1006.9 772 68.1
TAR623G0474 Trochodendron aralioides HOM05D000764 ORTHO05D004953 1.5e-273 947.6 776 63.9
CDE10G0575 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 3.7e-256 889.8 964 51.7
Mapoly0029s0052 Marchantia polymorpha HOM05D000764 ORTHO05D004953 9.4e-252 875.2 2130 33.2
AUR62019164 Chenopodium quinoa HOM05D000764 ORTHO05D004953 1.4e-250 871.3 833 55.9
Aqoxy368s001 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 5.2e-250 869.4 1007 49.4
Pp3c11_22280 Physcomitrium patens HOM05D000764 ORTHO05D004953 1.1e-236 825.1 2150 32.0
AUR62019165 Chenopodium quinoa HOM05D000764 ORTHO05D004953 2.3e-213 747.7 1184 41.5
vmacro06915 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 1.3e-208 731.9 1248 39.7
SHI31301 Sapria himalayana HOM05D000764 ORTHO05D004953 1.2e-187 662.1 1030 41.3
AagrBONN_evm.TU.Sc2ySwM_117.2245 Anthoceros agrestis HOM05D000764 ORTHO05D004953 6.2e-187 659.8 1981 30.3
Migut.L00371 Erythranthe guttata HOM05D000764 ORTHO05D004953 1.4e-167 595.5 409 70.9
SMO365G0018 Selaginella moellendorffii HOM05D000764 ORTHO05D004953 3.5e-166 590.9 1903 29.4
Os05g0447500 Oryza sativa ssp. japonica HOM05D000764 ORTHO05D004953 9.3e-151 539.7 590 50.7
Pp3c7_4610 Physcomitrium patens HOM05D000764 ORTHO05D004953 1.8e-149 535.4 1602 30.0
Migut.L00380 Erythranthe guttata HOM05D000764 ORTHO05D004953 1.4e-146 525.8 640 50.0
SalBow6G2556 Salvia bowleyana HOM05D000764 ORTHO05D004953 6.5e-144 516.9 546 53.5
Actinidia02700 Actinidia chinensis HOM05D000764 ORTHO05D004953 4.4e-132 477.6 320 71.2
Lj2A763G34 Lonicera japonica HOM05D000764 ORTHO05D004953 1.5e-116 426.0 511 49.9
Actinidia02701 Actinidia chinensis HOM05D000764 ORTHO05D004953 1.3e-96 359.8 324 60.8
Os05g0447580 Oryza sativa ssp. japonica HOM05D000764 ORTHO05D004953 1.1e-93 350.1 355 51.5
CDE10G0477 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 4.0e-93 348.2 769 36.9
SHI31298 Sapria himalayana HOM05D000764 ORTHO05D004953 4.4e-92 344.7 488 44.9
SEGI_19391 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 2.4e-90 339.0 375 50.4
Actinidia15647 Actinidia chinensis HOM05D000764 ORTHO05D004953 1.0e-88 333.6 219 73.1
Aqoxy6G02541 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 1.2e-81 310.1 280 58.9
Hma1.2p1_0449F.1_g155100 Hydrangea macrophylla HOM05D000764 ORTHO05D004953 1.2e-78 300.1 210 68.6
VMungo1080G1023 Vigna mungo HOM05D000764 ORTHO05D004953 2.0e-76 292.7 192 75.0
CiPaw.14G136600 Carya illinoinensis HOM05D000764 ORTHO05D004953 1.3e-75 290.0 243 62.1
VMungo1080G0389 Vigna mungo HOM05D000764 ORTHO05D004953 5.1e-72 278.1 386 48.4
CBR_g38308 Chara braunii HOM05D000019 ORTHO05D000048 1.8e-69 269.6 1094 27.1
VMungo1080G1824 Vigna mungo HOM05D000764 ORTHO05D004953 2.3e-64 252.7 165 72.1
COL.COLO4_07282 Corchorus olitorius HOM05D000764 ORTHO05D004953 5.3e-61 241.5 162 71.0
vmacro06920 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 5.4e-58 231.5 160 69.4
Dinv39954 Davidia involucrata HOM05D000764 ORTHO05D004953 2.0e-52 213.0 292 44.5
SEGI_38078 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 1.3e-51 210.3 149 67.8
CAN.G610.44 Capsicum annuum HOM05D000764 ORTHO05D004953 1.4e-50 206.8 301 43.5
CAN.G1237.45 Capsicum annuum HOM05D000764 ORTHO05D004953 8.7e-48 197.6 421 36.8
CAN.G1237.21 Capsicum annuum HOM05D000764 ORTHO05D004953 1.1e-47 197.2 255 46.7
Psat6g137480 Pisum sativum HOM05D000493 ORTHO05D004953 3.7e-46 192.2 323 41.2
Cpa.g.sc119.45 Carica papaya HOM05D000764 ORTHO05D004953 2.4e-45 189.5 195 56.4
CDE10G1322 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 6.5e-43 181.4 125 64.8
HPP92_009741 Vanilla planifolia HOM05D000764 ORTHO05D004953 9.7e-39 167.5 575 28.0
CAN.G1237.46 Capsicum annuum HOM05D000764 ORTHO05D004953 2.8e-38 166.0 218 48.6
Thhalv10012088m.g Eutrema salsugineum HOM05D000764 ORTHO05D004953 1.1e-37 164.1 118 78.0
CDE10G0100 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 3.4e-36 159.1 326 35.9
VMungo1383G3575 Vigna mungo HOM05D000764 ORTHO05D004953 4.6e-33 148.7 384 34.9
Dinv39953 Davidia involucrata HOM05D000100 ORTHO05D000052 7.9e-33 147.9 130 61.5
Rhsim12G0118500 Rhododendron simsii HOM05D000764 ORTHO05D004953 1.7e-27 130.2 444 32.9
CAN.G1237.22 Capsicum annuum HOM05D000764 ORTHO05D004953 5.0e-27 128.6 90 66.7
Nn1g03529 Nelumbo nucifera HOM05D000764 ORTHO05D004953 1.1e-26 127.5 57 91.2
Psat5g238800 Pisum sativum HOM05D000764 ORTHO05D002785 7.0e-21 108.2 111 55.0
Psat5g238960 Pisum sativum HOM05D000764 ORTHO05D002785 7.0e-21 108.2 111 55.0
Psat7g241120 Pisum sativum HOM05D002716 ORTHO05D003324 1.0e-19 104.4 153 44.4
Psat2g093280 Pisum sativum HOM05D002199 ORTHO05D007829 1.1e-18 100.9 182 39.6
SHI31300 Sapria himalayana HOM05D000764 ORTHO05D004953 2.7e-17 96.3 57 71.9
Oeu017835.1 Olea europaea HOM05D000764 ORTHO05D004953 4.7e-17 95.5 109 51.4
SHI31294 Sapria himalayana HOM05D000764 ORTHO05D004953 1.0e-16 94.4 118 44.9
CiPaw.14G136500 Carya illinoinensis HOM05D000764 ORTHO05D004953 2.3e-16 93.2 67 68.7
BcaC03g15090 Brassica carinata HOM05D000951 ORTHO05D032059 8.8e-16 91.3 75 61.3
BolC2t08722H Brassica oleracea HOM05D000951 ORTHO05D032059 8.8e-16 91.3 75 61.3
Sc16g0012210 Simmondsia chinensis HOM05D000764 ORTHO05D004953 2.3e-08 66.6 160 36.2
C02p26490 Brassica napus HOM05D000951 ORTHO05D032059 2.6e-07 63.2 85 42.4
PSO339G0018 Papaver somniferum HOM05D000164 ORTHO05D000096 2.6e-07 63.2 94 40.4
SHI31299 Sapria himalayana HOM05D000764 ORTHO05D004953 9.7e-07 61.2 127 36.2
CBR_g38302 Chara braunii HOM05D000019 ORTHO05D000353 1.7e-06 60.5 77 42.9
MELO3C030779.2 Cucumis melo HOM05D000764 ORTHO05D004953 2.2e-06 60.1 94 39.4
CAN.G1248.23 Capsicum annuum HOM05D000764 ORTHO05D009197 2.8e-06 59.7 70 50.0
C07p61900 Brassica napus HOM05D000764 ORTHO05D004953 6.3e-06 58.5 48 62.5


User provided reference genes

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