Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G63080 Arabidopsis lyrata HOM05D003895 ORTHO05D004723 0.0e+00 1474.5 726 100.0
AT1G55090 Arabidopsis thaliana HOM05D003895 ORTHO05D004723 0.0e+00 1449.9 726 97.8
Carub.0001s4358 Capsella rubella HOM05D003895 ORTHO05D004723 0.0e+00 1439.5 726 96.6
CARHR044680 Cardamine hirsuta HOM05D003895 ORTHO05D004723 0.0e+00 1426.4 727 95.7
Sp1g40750 Schrenkiella parvula HOM05D003895 ORTHO05D004723 0.0e+00 1411.4 726 95.0
Thhalv10011266m.g Eutrema salsugineum HOM05D003895 ORTHO05D004723 0.0e+00 1408.7 726 94.2
Aa31LG2G1550 Aethionema arabicum HOM05D003895 ORTHO05D004723 0.0e+00 1390.2 726 93.1
A08p01020 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1389.4 726 93.0
BcaB04g17002 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1389.0 726 93.3
BraA06t23255Z Brassica rapa HOM05D003895 ORTHO05D004723 0.0e+00 1389.0 729 92.9
A06p00400 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1387.5 729 92.7
BcaC01g01456 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1387.1 726 93.0
BcaB07g33238 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1385.5 727 93.4
BolC6t36080H Brassica oleracea HOM05D003895 ORTHO05D004723 0.0e+00 1385.5 728 92.9
C06p10070 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1380.9 728 92.7
BcaC08g43605 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1380.2 728 92.9
C03p92220 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1347.8 738 90.4
BolC3t21537H Brassica oleracea HOM05D003895 ORTHO05D004723 0.0e+00 1347.4 738 90.2
BraA08t32154Z Brassica rapa HOM05D003895 ORTHO05D004723 0.0e+00 1346.6 737 90.1
THA.LOC104823616 Tarenaya hassleriana HOM05D003895 ORTHO05D004723 0.0e+00 1318.5 726 86.8
Oeu009988.1 Olea europaea HOM05D003895 ORTHO05D004723 0.0e+00 1290.4 729 84.6
TWI60G1173 Tripterygium wilfordii HOM05D003895 ORTHO05D004723 0.0e+00 1288.9 731 85.0
Migut.E00651 Erythranthe guttata HOM05D003895 ORTHO05D004723 0.0e+00 1278.1 731 83.4
Potri.003G143700 Populus trichocarpa HOM05D003895 ORTHO05D004723 0.0e+00 1277.7 731 83.9
Thecc.03G303200 Theobroma cacao HOM05D003895 ORTHO05D004723 0.0e+00 1275.4 733 82.7
MSTRG.13762 Avicennia marina HOM05D003895 ORTHO05D004723 0.0e+00 1274.6 732 83.5
Cpa.g.sc15.11 Carica papaya HOM05D003895 ORTHO05D004723 0.0e+00 1273.8 738 83.6
Cfa011961 Carpinus fangiana HOM05D003895 ORTHO05D004723 0.0e+00 1273.8 734 83.2
PGR042G2513 Punica granatum HOM05D003895 ORTHO05D004723 0.0e+00 1273.1 734 82.7
Gorai.004G131300 Gossypium raimondii HOM05D003895 ORTHO05D004723 0.0e+00 1272.3 731 82.9
Aqoxy2G01051 Aquilegia oxysepala HOM05D003895 ORTHO05D004723 0.0e+00 1271.9 733 82.4
Cc05_g02370 Coffea canephora HOM05D003895 ORTHO05D004723 0.0e+00 1271.5 732 83.3
Potri.001G087400 Populus trichocarpa HOM05D003895 ORTHO05D004723 0.0e+00 1271.5 731 83.3
Eucgr.E01025 Eucalyptus grandis HOM05D003895 ORTHO05D004723 0.0e+00 1270.4 728 83.5
Gohir.D08G124600 Gossypium hirsutum HOM05D003895 ORTHO05D004723 0.0e+00 1270.0 731 83.0
Nitab4.5_0002439g0120 Nicotiana tabacum HOM05D003895 ORTHO05D004723 0.0e+00 1269.6 732 83.9
Prupe.5G126000 Prunus persica HOM05D003895 ORTHO05D004723 0.0e+00 1269.2 734 83.5
RcHm_v2.0_Chr7g0186311 Rosa chinensis HOM05D003895 ORTHO05D004723 0.0e+00 1268.1 730 83.4
SalBow2G2362 Salvia bowleyana HOM05D003895 ORTHO05D004723 0.0e+00 1268.1 728 83.8
Cc08_g16460 Coffea canephora HOM05D003895 ORTHO05D004723 0.0e+00 1267.7 726 82.9
CiPaw.11G115900 Carya illinoinensis HOM05D003895 ORTHO05D004723 0.0e+00 1267.3 733 82.8
HanXRQChr03g0083671 Helianthus annuus HOM05D003895 ORTHO05D004723 0.0e+00 1266.9 727 83.6
COL.COLO4_10753 Corchorus olitorius HOM05D003895 ORTHO05D004723 0.0e+00 1265.8 727 83.1
DCAR_006502 Daucus carota HOM05D003895 ORTHO05D004723 0.0e+00 1265.0 732 82.1
Manes.02G005900 Manihot esculenta HOM05D003895 ORTHO05D004723 0.0e+00 1265.0 731 82.8
Ciclev10024991m.g Citrus clementina HOM05D003895 ORTHO05D004723 0.0e+00 1264.2 732 82.2
Duzib068G0704 Durio zibethinus HOM05D003895 ORTHO05D004723 0.0e+00 1263.8 733 82.1
Solyc08g082830.3 Solanum lycopersicum HOM05D003895 ORTHO05D004723 0.0e+00 1263.4 732 82.7
TAR629G1064 Trochodendron aralioides HOM05D003895 ORTHO05D004723 0.0e+00 1263.4 737 82.8
Sabra01G0063700 Salix brachista HOM05D003895 ORTHO05D004723 0.0e+00 1263.1 728 83.1
MD06G1113100 Malus domestica HOM05D003895 ORTHO05D004723 0.0e+00 1262.3 734 83.2
FvH4_5g11490 Fragaria vesca HOM05D003895 ORTHO05D004723 0.0e+00 1261.9 728 82.8
FAN04G2440 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1261.5 730 82.9
FAN08G0955 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1261.1 730 82.7
FAN18G2619 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1260.7 728 82.7
FAN18G3428 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1260.7 728 82.7
HanXRQChr06g0166321 Helianthus annuus HOM05D003895 ORTHO05D004723 0.0e+00 1260.7 726 83.1
CSS0003453 Camellia sinensis var. sinensis HOM05D003895 ORTHO05D004723 0.0e+00 1260.4 732 83.1
CANSAT54G0301 Cannabis sativa HOM05D003895 ORTHO05D004723 0.0e+00 1260.0 733 81.3
Nitab4.5_0002367g0210 Nicotiana tabacum HOM05D003895 ORTHO05D004723 0.0e+00 1260.0 724 84.1
Actinidia04389 Actinidia chinensis HOM05D003895 ORTHO05D004723 0.0e+00 1259.6 726 82.9
MELO3C005756.2 Cucumis melo HOM05D003895 ORTHO05D004723 0.0e+00 1259.6 726 83.2
ECA240G1010 Erigeron canadensis HOM05D003895 ORTHO05D004723 0.0e+00 1259.2 727 82.9
PGSC0003DMG400012128 Solanum tuberosum HOM05D003895 ORTHO05D004723 0.0e+00 1259.2 732 82.4
Ciclev10019024m.g Citrus clementina HOM05D003895 ORTHO05D004723 0.0e+00 1257.7 732 81.4
QL02p029300 Quercus lobata HOM05D003895 ORTHO05D004723 0.0e+00 1257.3 731 82.5
MD14G1134200 Malus domestica HOM05D003895 ORTHO05D004723 0.0e+00 1256.9 734 83.0
Nn3g20296 Nelumbo nucifera HOM05D003895 ORTHO05D004723 0.0e+00 1256.9 726 83.1
CAN.G567.61 Capsicum annuum HOM05D003895 ORTHO05D004723 0.0e+00 1255.0 732 82.1
PSO170G0459 Papaver somniferum HOM05D003895 ORTHO05D004723 0.0e+00 1253.8 738 81.6
CSS0024936 Camellia sinensis var. sinensis HOM05D003895 ORTHO05D004723 0.0e+00 1253.0 732 82.8
Rhsim07G0079800 Rhododendron simsii HOM05D003895 ORTHO05D004723 0.0e+00 1253.0 732 82.5
Sopen08g031060 Solanum pennellii HOM05D003895 ORTHO05D004723 0.0e+00 1251.5 700 84.7
Haze_09120 Corylus avellana HOM05D003895 ORTHO05D004723 0.0e+00 1250.0 749 81.0
Sabra03G0104100 Salix brachista HOM05D003895 ORTHO05D004723 0.0e+00 1247.3 774 78.4
Lj4g0018300 Lotus japonicus HOM05D003895 ORTHO05D004723 0.0e+00 1245.3 733 81.9
GSVIVG01019608001 Vitis vinifera HOM05D003895 ORTHO05D004723 0.0e+00 1245.3 727 81.6
Ca_17453_v3 Cicer arietinum L. HOM05D003895 ORTHO05D004723 0.0e+00 1242.3 733 82.1
Oeu059576.4 Olea europaea HOM05D003895 ORTHO05D004723 0.0e+00 1238.0 781 77.6
Psat7g023560 Pisum sativum HOM05D003895 ORTHO05D004723 0.0e+00 1237.6 732 80.7
Medtr8g099885 Medicago truncatula HOM05D003895 ORTHO05D004723 0.0e+00 1231.1 735 80.4
Hund14202 Selenicereus undatus HOM05D003895 ORTHO05D004723 0.0e+00 1229.5 733 79.7
TPR.G3395 Trifolium pratense HOM05D003895 ORTHO05D004723 0.0e+00 1227.2 737 80.2
Lalb_Chr16g0390761 Lupinus albus HOM05D003895 ORTHO05D004723 0.0e+00 1226.8 732 80.5
Phvul.002G328900 Phaseolus vulgaris HOM05D003895 ORTHO05D004723 0.0e+00 1226.8 732 80.9
Lj4g0016220 Lotus japonicus HOM05D003895 ORTHO05D004723 0.0e+00 1224.5 733 80.2
vmacro13870 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 0.0e+00 1223.4 774 76.9
arahy.Tifrunner.gnm1.ann1.68E5M7 Arachis hypogaea HOM05D003895 ORTHO05D004723 0.0e+00 1220.3 733 80.4
TPR.G18245 Trifolium pratense HOM05D003895 ORTHO05D004723 0.0e+00 1220.3 737 79.9
Glyma.05G219500 Glycine max HOM05D003895 ORTHO05D004723 0.0e+00 1213.0 733 79.8
arahy.Tifrunner.gnm1.ann1.M62N24 Arachis hypogaea HOM05D003895 ORTHO05D004723 0.0e+00 1211.4 728 80.1
VMungo0251G3777 Vigna mungo HOM05D003895 ORTHO05D004723 0.0e+00 1211.1 729 80.2
vmacro10679 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 0.0e+00 1209.1 779 75.6
vmacro22441 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 0.0e+00 1209.1 779 75.6
ClCG01G001820 Citrullus lanatus HOM05D003895 ORTHO05D004723 0.0e+00 1206.0 824 73.1
EL10Ac5g12963 Beta vulgaris HOM05D003895 ORTHO05D004723 0.0e+00 1203.0 698 80.4
Lsat_1_v5_gn_6_83601 Lactuca sativa HOM05D003895 ORTHO05D004723 0.0e+00 1201.0 726 80.9
Lj2C160T5 Lonicera japonica HOM05D003895 ORTHO05D004723 0.0e+00 1195.6 732 79.5
Peaxi162Scf00074g00431 Petunia axillaris HOM05D003895 ORTHO05D004723 0.0e+00 1190.3 732 80.1
Psat7g023520 Pisum sativum HOM05D003895 ORTHO05D004723 0.0e+00 1189.1 731 77.8
Sc01g0010470 Simmondsia chinensis HOM05D003895 ORTHO05D004723 0.0e+00 1182.5 663 84.5
AUR62029097 Chenopodium quinoa HOM05D003895 ORTHO05D004723 0.0e+00 1182.2 735 76.6
AUR62015016 Chenopodium quinoa HOM05D003895 ORTHO05D004723 0.0e+00 1174.8 750 75.2
PSO339G2482 Papaver somniferum HOM05D003895 ORTHO05D004723 0.0e+00 1166.4 736 76.2
TPR.G3413 Trifolium pratense HOM05D003895 ORTHO05D004723 0.0e+00 1159.4 695 78.6
unitig_21.g20891 Utricularia gibba HOM05D003895 ORTHO05D004723 0.0e+00 1154.8 735 76.3
PSO017G1958 Papaver somniferum HOM05D003895 ORTHO05D004723 0.0e+00 1151.3 738 76.3
CsaV3_5G001970 Cucumis sativus L. HOM05D003895 ORTHO05D004723 0.0e+00 1146.3 661 83.1
Glyma.08G025800 Glycine max HOM05D003895 ORTHO05D004723 0.0e+00 1146.0 659 83.6
SGA_v2.0_scaffold295G47513 Striga asiatica HOM05D003895 ORTHO05D004723 0.0e+00 1142.9 727 76.2
MBI02_g10555_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 0.0e+00 1114.4 741 72.6
Zm00001eb094700 Zea mays HOM05D003895 ORTHO05D004723 0.0e+00 1114.0 733 72.0
HPP92_025338 Vanilla planifolia HOM05D003895 ORTHO05D004723 0.0e+00 1107.0 699 74.4
EL10Ac5g12472 Beta vulgaris HOM05D003895 ORTHO05D004723 0.0e+00 1100.5 696 74.7
Sed0021355 Sechium edule HOM05D003895 ORTHO05D004723 0.0e+00 1100.5 616 85.7
ATR1098G082 Amborella trichopoda HOM05D003895 ORTHO05D004723 0.0e+00 1091.6 734 71.1
Hma1.2p1_1835F.1_g304665 Hydrangea macrophylla HOM05D003895 ORTHO05D004723 0.0e+00 1090.5 616 84.4
SEGI_31460 Sequoiadendron giganteum HOM05D003895 ORTHO05D004723 1.0e-307 1059.7 733 70.0
Dinv34692 Davidia involucrata HOM05D003895 ORTHO05D004723 1.3e-307 1059.3 585 86.5
Manes.02G005800 Manihot esculenta HOM05D003895 ORTHO05D004723 1.7e-302 1042.3 703 72.1
FAN13G0619 Fragaria x ananassa HOM05D003895 ORTHO05D004723 1.5e-298 1029.2 730 70.3
Ah.12g052950 Amaranthus hybridus HOM05D003895 ORTHO05D004723 6.7e-291 1003.8 752 67.8
Mapoly0035s0052 Marchantia polymorpha HOM05D003895 ORTHO05D004723 2.4e-280 968.8 693 66.5
SMO174G0028 Selaginella moellendorffii HOM05D003895 ORTHO05D004723 1.5e-279 966.1 732 64.1
CBR_g19728 Chara braunii HOM05D003895 ORTHO05D004723 7.1e-277 957.2 713 64.5
AUR62019884 Chenopodium quinoa HOM05D003895 ORTHO05D004723 2.7e-276 955.3 701 67.5
MCO17G006 Micromonas commoda HOM05D003895 ORTHO05D004723 3.0e-259 898.7 690 62.8
AagrBONN_evm.TU.Sc2ySwM_228.4970 Anthoceros agrestis HOM05D003895 ORTHO05D004723 8.2e-257 890.6 611 69.4
Pp3c17_21910 Physcomitrium patens HOM05D003895 ORTHO05D004723 3.6e-252 875.2 670 63.6
Gohir.A08G111660 Gossypium hirsutum HOM05D003895 ORTHO05D004723 1.2e-247 860.1 505 83.0
SMO358G0326 Selaginella moellendorffii HOM05D003895 ORTHO05D004723 4.2e-245 851.7 700 59.4
Os07g0167100 Oryza sativa ssp. japonica HOM05D003895 ORTHO05D004723 4.0e-243 845.1 567 72.3
PRCOL_00000896 Prasinoderma coloniale HOM05D003895 ORTHO05D004723 1.0e-238 830.5 702 57.5
Cre10.g435250 Chlamydomonas reinhardtii HOM05D003895 ORTHO05D004723 2.7e-231 805.8 783 53.9
Migut.E01630 Erythranthe guttata HOM05D003895 ORTHO05D004723 4.4e-218 761.9 502 72.9
Hma1.2p1_0077F.1_g039630 Hydrangea macrophylla HOM05D003895 ORTHO05D004723 8.9e-211 737.6 417 83.7
Cfa024512 Carpinus fangiana HOM05D003895 ORTHO05D004723 3.3e-205 719.2 706 51.6
MBI02_g43672_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 1.4e-176 624.0 422 71.8
PSO210G1536 Papaver somniferum HOM05D003895 ORTHO05D004723 8.7e-158 561.6 377 70.8
Aqoxy456s001 Aquilegia oxysepala HOM05D003895 ORTHO05D004723 2.5e-152 543.5 303 87.5
AUR62007020 Chenopodium quinoa HOM05D003895 ORTHO05D004723 1.8e-142 510.8 317 77.0
MBI05_g40947_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 1.4e-139 501.1 357 69.5
ECA246G1101 Erigeron canadensis HOM05D003895 ORTHO05D004723 4.5e-138 496.1 311 78.8
Haze_09105 Corylus avellana HOM05D003895 ORTHO05D004723 2.1e-135 487.3 349 73.9
MBI15_g06349_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 1.8e-123 447.6 330 66.7
MBI05_g43497_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 4.0e-110 403.3 288 68.4
SalBow2G1745 Salvia bowleyana HOM05D003895 ORTHO05D004723 4.7e-103 379.8 312 62.8
Gohir.A08G111640 Gossypium hirsutum HOM05D003895 ORTHO05D004723 6.6e-89 332.8 183 79.8
BcaB04g17000 Brassica carinata HOM05D003895 ORTHO05D004723 9.5e-88 328.9 215 77.2
MBI05_g40946_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 1.1e-86 325.5 209 74.2
BcaB04g16999 Brassica carinata HOM05D003895 ORTHO05D004723 2.7e-82 310.8 201 79.1
Psat7g023400 Pisum sativum HOM05D003895 ORTHO05D004723 2.3e-81 307.8 438 44.5
SalBow2G0791 Salvia bowleyana HOM05D003895 ORTHO05D004723 1.1e-70 272.3 168 72.0
arahy.Tifrunner.gnm1.ann1.RT27P1 Arachis hypogaea HOM05D003895 ORTHO05D004723 6.9e-70 269.6 353 47.3
SalBow2G2695 Salvia bowleyana HOM05D003895 ORTHO05D004723 9.3e-67 259.2 211 61.6
BcaB04g17001 Brassica carinata HOM05D003895 ORTHO05D004723 7.1e-59 233.0 201 63.7
AagrBONN_evm.TU.Sc2ySwM_228.4951 Anthoceros agrestis HOM05D003895 ORTHO05D004723 2.5e-48 198.0 220 45.9
BcaB05g22068 Brassica carinata HOM05D003895 ORTHO05D004723 8.2e-47 193.0 127 72.4
BcaB01g00975 Brassica carinata HOM05D003895 ORTHO05D004723 3.4e-45 187.6 101 87.1
BcaC01g01457 Brassica carinata HOM05D003895 ORTHO05D004723 5.0e-44 183.7 133 69.9
DCAR_006503 Daucus carota HOM05D001368 ORTHO05D003846 1.3e-39 169.1 208 48.1
CARHR260480 Cardamine hirsuta HOM05D003895 ORTHO05D004723 1.7e-36 158.7 182 50.5
CARHR106400 Cardamine hirsuta HOM05D003895 ORTHO05D004723 6.5e-36 156.8 182 50.0
BcaB01g02352 Brassica carinata HOM05D003895 ORTHO05D004723 1.0e-33 149.4 80 86.2
Sopen06g027550 Solanum pennellii HOM05D003895 ORTHO05D004723 1.9e-27 128.6 162 49.4
BcaC01g01459 Brassica carinata HOM05D003895 ORTHO05D004723 3.9e-25 120.9 68 85.3
BcaC01g01463 Brassica carinata HOM05D003895 ORTHO05D004723 5.2e-25 120.6 67 86.6
BcaB04g16998 Brassica carinata HOM05D003895 ORTHO05D004723 2.4e-22 111.7 53 96.2
Nitab4.5_0000974g0050 Nicotiana tabacum HOM05D003895 ORTHO05D285369 5.3e-22 110.5 101 58.4
Solyc06g071240.3 Solanum lycopersicum HOM05D003895 ORTHO05D004723 2.2e-20 105.1 130 52.3
MBI15_g06350_MAGBIO Magnolia biondii HOM05D000011 ORTHO05D000018 6.5e-20 103.6 63 68.3
Lj4g0022111 Lotus japonicus HOM05D019175 ORTHO05D018974 3.2e-19 101.3 60 78.3
CAN.G628.62 Capsicum annuum HOM05D003895 ORTHO05D004723 1.8e-17 95.5 110 52.7
Nitab4.5_0001308g0060 Nicotiana tabacum HOM05D003895 ORTHO05D282403 5.7e-16 90.5 79 58.2
Nitab4.5_0004376g0060 Nicotiana tabacum HOM05D003895 ORTHO05D286866 5.0e-12 77.4 50 78.0
Atru.chr9.1960 Acer truncatum HOM05D003895 ORTHO05D004723 5.2e-09 67.4 45 80.0
Glyma.17G110701 Glycine max HOM05D003895 ORTHO05D004723 3.4e-08 64.7 34 91.2
Nitab4.5_0000050g0220 Nicotiana tabacum HOM05D003895 ORTHO05D285100 1.3e-07 62.8 46 73.9
PGSC0003DMG400033059 Solanum tuberosum HOM05D003895 ORTHO05D004723 6.3e-07 60.5 41 68.3
Medtr3g108170 Medicago truncatula HOM05D003895 ORTHO05D260611 7.0e-06 57.0 38 76.3
Haze_24893 Corylus avellana HOM05D003698 ORTHO05D004320 9.1e-06 56.6 46 69.6


User provided reference genes

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