Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G62820 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 3.3e-96 355.1 194 100.0
AT1G54110 Arabidopsis thaliana HOM05D003593 ORTHO05D004064 1.0e-73 280.4 178 86.0
AL5G36800 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 2.0e-72 276.2 181 86.2
AT3G55600 Arabidopsis thaliana HOM05D003593 ORTHO05D004064 2.0e-72 276.2 181 86.2
Carub.0003s3082 Capsella rubella HOM05D003593 ORTHO05D004064 1.8e-70 269.6 181 85.1
Sp1g35080 Schrenkiella parvula HOM05D003593 ORTHO05D004064 4.1e-70 268.5 178 82.6
CARHR165650 Cardamine hirsuta HOM05D003593 ORTHO05D004064 1.6e-69 266.5 180 83.3
Sp5g06880 Schrenkiella parvula HOM05D003593 ORTHO05D004064 7.7e-69 264.2 181 84.5
Thhalv10011761m.g Eutrema salsugineum HOM05D003593 ORTHO05D004064 5.0e-68 261.5 178 83.1
A09p48590 Brassica napus HOM05D003593 ORTHO05D004064 1.9e-67 259.6 179 82.1
BraA09t40311Z Brassica rapa HOM05D003593 ORTHO05D004064 1.9e-67 259.6 179 82.1
C08p30920 Brassica napus HOM05D003593 ORTHO05D004064 2.5e-67 259.2 183 80.9
Thhalv10010672m.g Eutrema salsugineum HOM05D003593 ORTHO05D004064 2.5e-67 259.2 181 81.8
BcaC07g39887 Brassica carinata HOM05D002600 ORTHO05D003013 1.6e-66 256.5 181 80.7
BolC8t50717H Brassica oleracea HOM05D003593 ORTHO05D004064 1.6e-66 256.5 181 80.7
C08p30910 Brassica napus HOM05D003593 ORTHO05D004064 2.1e-66 256.1 183 80.3
THA.LOC104810051 Tarenaya hassleriana HOM05D003593 ORTHO05D004064 5.4e-62 241.5 181 75.1
THA.LOC104810053 Tarenaya hassleriana HOM05D003593 ORTHO05D004064 2.0e-61 239.6 181 75.1
AL6G40520 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 1.5e-59 233.4 140 91.4
AL1G48760 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 1.2e-58 230.3 140 90.0
BcaB01g00076 Brassica carinata HOM05D003593 ORTHO05D004064 4.1e-54 215.3 154 79.2
Ciclev10032601m.g Citrus clementina HOM05D003593 ORTHO05D004064 8.0e-50 201.1 182 62.1
Ciclev10021956m.g Citrus clementina HOM05D003593 ORTHO05D004064 2.3e-49 199.5 182 61.5
GSVIVG01029263001 Vitis vinifera HOM05D003593 ORTHO05D004064 2.0e-48 196.4 182 61.5
Aa31LG5G19840 Aethionema arabicum HOM05D003593 ORTHO05D004064 2.6e-48 196.1 155 71.6
CANSAT01G0027 Cannabis sativa HOM05D003593 ORTHO05D004064 3.7e-47 192.2 180 60.6
TWI39G0804 Tripterygium wilfordii HOM05D003593 ORTHO05D004064 3.7e-47 192.2 186 61.3
Phvul.003G138826 Phaseolus vulgaris HOM05D003593 ORTHO05D004064 8.3e-47 191.0 182 58.2
Phvul.003G139226 Phaseolus vulgaris HOM05D003593 ORTHO05D004064 8.3e-47 191.0 182 58.2
Phvul.003G138700 Phaseolus vulgaris HOM05D003593 ORTHO05D004064 1.8e-46 189.9 182 58.2
QL03p003406 Quercus lobata HOM05D003593 ORTHO05D004064 7.0e-46 188.0 186 59.7
Dinv34117 Davidia involucrata HOM05D003593 ORTHO05D004064 1.6e-45 186.8 181 61.3
VMungo1215G1259 Vigna mungo HOM05D003593 ORTHO05D004064 3.5e-45 185.7 182 57.7
MSTRG.18306 Avicennia marina HOM05D003593 ORTHO05D004064 4.6e-45 185.3 182 58.8
Glyma.13G102300 Glycine max HOM05D003593 ORTHO05D004064 4.6e-45 185.3 182 57.7
Glyma.17G056700 Glycine max HOM05D003593 ORTHO05D004064 4.6e-45 185.3 182 57.1
PGR142G0083 Punica granatum HOM05D003593 ORTHO05D004064 5.9e-45 184.9 182 57.7
QL03p003697 Quercus lobata HOM05D003593 ORTHO05D004064 7.8e-45 184.5 184 59.2
Cpa.g.sc103.74 Carica papaya HOM05D003593 ORTHO05D004064 1.0e-44 184.1 186 58.1
Potri.018G133700 Populus trichocarpa HOM05D003593 ORTHO05D004064 1.0e-44 184.1 182 59.9
GSVIVG01033604001 Vitis vinifera HOM05D003593 ORTHO05D004064 1.0e-44 184.1 182 59.3
Glyma.14G032100 Glycine max HOM05D003593 ORTHO05D004064 1.3e-44 183.7 182 58.2
CiPaw.07G199700 Carya illinoinensis HOM05D003593 ORTHO05D004064 1.7e-44 183.3 184 61.4
COL.COLO4_13717 Corchorus olitorius HOM05D003593 ORTHO05D004064 2.3e-44 183.0 182 58.2
arahy.Tifrunner.gnm1.ann1.PB4QPE Arachis hypogaea HOM05D003593 ORTHO05D004064 3.9e-44 182.2 184 58.7
Actinidia21188 Actinidia chinensis HOM05D003593 ORTHO05D004064 5.0e-44 181.8 182 59.9
arahy.Tifrunner.gnm1.ann1.HDC0J8 Arachis hypogaea HOM05D003593 ORTHO05D004064 5.0e-44 181.8 184 58.7
Lsat_1_v5_gn_8_91320 Lactuca sativa HOM05D003593 ORTHO05D004064 5.0e-44 181.8 185 60.5
Rhsim01G0049400 Rhododendron simsii HOM05D003593 ORTHO05D004064 5.0e-44 181.8 182 58.8
RcHm_v2.0_Chr6g0268981 Rosa chinensis HOM05D003593 ORTHO05D004064 5.0e-44 181.8 182 59.9
FAN20G0230 Fragaria x ananassa HOM05D003593 ORTHO05D004064 1.5e-43 180.3 182 59.3
RcHm_v2.0_Chr5g0056791 Rosa chinensis HOM05D003593 ORTHO05D004064 1.5e-43 180.3 182 59.3
GSVIVG01025934001 Vitis vinifera HOM05D003593 ORTHO05D004064 1.5e-43 180.3 182 59.3
CiPaw.08G030900 Carya illinoinensis HOM05D003593 ORTHO05D004064 2.5e-43 179.5 185 58.4
FvH4_2g10880 Fragaria vesca HOM05D003593 ORTHO05D004064 2.5e-43 179.5 182 59.3
Cfa013477 Carpinus fangiana HOM05D003593 ORTHO05D004064 3.3e-43 179.1 186 57.0
Gohir.D10G156600 Gossypium hirsutum HOM05D003593 ORTHO05D004064 3.3e-43 179.1 182 57.1
Gorai.011G174800 Gossypium raimondii HOM05D003593 ORTHO05D004064 3.3e-43 179.1 182 57.1
Nn8g40907 Nelumbo nucifera HOM05D003593 ORTHO05D004064 3.3e-43 179.1 181 58.0
Nitab4.5_0010661g0020 Nicotiana tabacum HOM05D003593 ORTHO05D004064 3.3e-43 179.1 182 58.2
Prupe.1G071200 Prunus persica HOM05D003593 ORTHO05D004064 3.3e-43 179.1 181 58.0
Duzib068G0242 Durio zibethinus HOM05D003593 ORTHO05D004064 7.3e-43 177.9 182 58.2
MD13G1238800 Malus domestica HOM05D003593 ORTHO05D004064 7.3e-43 177.9 182 58.8
FAN15G1423 Fragaria x ananassa HOM05D003593 ORTHO05D004064 1.2e-42 177.2 182 58.8
FAN24G3005 Fragaria x ananassa HOM05D003593 ORTHO05D004064 1.2e-42 177.2 182 58.8
Ca_21268_v3 Cicer arietinum L. HOM05D003593 ORTHO05D004064 1.6e-42 176.8 182 56.0
Lj4g0003900 Lotus japonicus HOM05D003593 ORTHO05D004064 1.6e-42 176.8 182 59.3
Gohir.A10G111600 Gossypium hirsutum HOM05D003593 ORTHO05D004064 3.6e-42 175.6 182 56.0
Prupe.2G148000 Prunus persica HOM05D003593 ORTHO05D004064 3.6e-42 175.6 182 58.2
Sabra18G0113300 Salix brachista HOM05D003593 ORTHO05D004064 6.2e-42 174.9 182 57.7
Eucgr.F03860 Eucalyptus grandis HOM05D003593 ORTHO05D004064 8.0e-42 174.5 184 58.2
Nitab4.5_0000630g0070 Nicotiana tabacum HOM05D003593 ORTHO05D004064 8.0e-42 174.5 182 57.7
CAN.G1497.5 Capsicum annuum HOM05D003593 ORTHO05D004064 1.8e-41 173.3 182 58.2
Thecc.09G252700 Theobroma cacao HOM05D003593 ORTHO05D004064 2.3e-41 172.9 182 58.2
AUR62035376 Chenopodium quinoa HOM05D003593 ORTHO05D004064 3.1e-41 172.6 182 57.7
Lalb_Chr12g0199721 Lupinus albus HOM05D003593 ORTHO05D004064 3.1e-41 172.6 174 56.9
Atru.chr1.1670 Acer truncatum HOM05D003593 ORTHO05D004064 4.0e-41 172.2 210 51.0
DCAR_007335 Daucus carota HOM05D003593 ORTHO05D002993 4.0e-41 172.2 172 60.5
Migut.D00405 Erythranthe guttata HOM05D003593 ORTHO05D004064 4.0e-41 172.2 181 56.9
Manes.16G049600 Manihot esculenta HOM05D003593 ORTHO05D004064 4.0e-41 172.2 170 61.8
Psat1g089640 Pisum sativum HOM05D003593 ORTHO05D004064 4.0e-41 172.2 183 57.4
AUR62029138 Chenopodium quinoa HOM05D003593 ORTHO05D004064 5.2e-41 171.8 182 57.7
Lj1C63T22 Lonicera japonica HOM05D003593 ORTHO05D004064 5.2e-41 171.8 181 55.8
Medtr8g027710 Medicago truncatula HOM05D003593 ORTHO05D004064 5.2e-41 171.8 182 56.6
QL02p059634 Quercus lobata HOM05D003593 ORTHO05D004064 5.2e-41 171.8 212 52.4
CAN.G675.9 Capsicum annuum HOM05D003593 ORTHO05D004064 6.8e-41 171.4 182 57.1
Lsat_1_v5_gn_9_9120 Lactuca sativa HOM05D003593 ORTHO05D004064 6.8e-41 171.4 194 53.1
CSS0033341 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 8.9e-41 171.0 178 59.6
CSS0039493 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 8.9e-41 171.0 178 59.6
Peaxi162Scf00195g00123 Petunia axillaris HOM05D003593 ORTHO05D004064 8.9e-41 171.0 181 58.0
Hma1.2p1_1219F.1_g267880 Hydrangea macrophylla HOM05D003593 ORTHO05D004064 1.2e-40 170.6 170 58.8
Psat2g189400 Pisum sativum HOM05D003593 ORTHO05D004064 1.2e-40 170.6 182 56.0
Hma1.2p1_0571F.1_g180780 Hydrangea macrophylla HOM05D003593 ORTHO05D004064 2.0e-40 169.9 168 58.9
TPR.G5405 Trifolium pratense HOM05D003593 ORTHO05D004064 2.0e-40 169.9 182 56.6
MSTRG.21503 Avicennia marina HOM05D003593 ORTHO05D004064 2.6e-40 169.5 181 54.7
Rhsim01G0266500 Rhododendron simsii HOM05D003593 ORTHO05D004064 2.6e-40 169.5 182 57.1
Hund02205 Selenicereus undatus HOM05D003593 ORTHO05D004064 2.6e-40 169.5 182 57.7
BcaC07g39889 Brassica carinata HOM05D003593 ORTHO05D004064 3.4e-40 169.1 158 64.6
FAN14G2581 Fragaria x ananassa HOM05D003593 ORTHO05D004064 4.4e-40 168.7 182 56.0
Solyc02g069380.3 Solanum lycopersicum HOM05D003593 ORTHO05D004064 1.3e-39 167.2 182 55.5
CsaV3_3G012080 Cucumis sativus L. HOM05D003593 ORTHO05D004064 1.7e-39 166.8 183 55.2
AUR62015608 Chenopodium quinoa HOM05D003593 ORTHO05D004064 2.2e-39 166.4 189 53.4
Aqoxy5G00845 Aquilegia oxysepala HOM05D003593 ORTHO05D004064 2.9e-39 166.0 182 54.4
MBI14_g31143_MAGBIO Magnolia biondii HOM05D003593 ORTHO05D004064 2.9e-39 166.0 184 56.5
Medtr4g126960 Medicago truncatula HOM05D003593 ORTHO05D004064 2.9e-39 166.0 182 55.5
CSS0041369 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 3.7e-39 165.6 182 53.8
MELO3C006423.2 Cucumis melo HOM05D003593 ORTHO05D004064 3.7e-39 165.6 183 55.2
FAN02G4054 Fragaria x ananassa HOM05D003593 ORTHO05D004064 3.7e-39 165.6 170 58.2
Cc07_g18270 Coffea canephora HOM05D003593 ORTHO05D004064 4.9e-39 165.2 184 54.9
FAN09G1792 Fragaria x ananassa HOM05D003593 ORTHO05D004064 4.9e-39 165.2 170 58.2
FAN09G2125 Fragaria x ananassa HOM05D003593 ORTHO05D004064 4.9e-39 165.2 170 58.2
FAN09G2587 Fragaria x ananassa HOM05D003593 ORTHO05D004064 4.9e-39 165.2 170 58.2
ECA236G3417 Erigeron canadensis HOM05D003593 ORTHO05D004064 1.4e-38 163.7 183 55.7
FAN05G2468 Fragaria x ananassa HOM05D003593 ORTHO05D004064 1.9e-38 163.3 170 58.2
HanXRQChr04g0113781 Helianthus annuus HOM05D003593 ORTHO05D004064 2.4e-38 162.9 183 55.2
Peaxi162Scf00956g00310 Petunia axillaris HOM05D003593 ORTHO05D004064 5.4e-38 161.8 183 55.2
TPR.G16420 Trifolium pratense HOM05D003593 ORTHO05D004064 5.4e-38 161.8 185 54.1
MBI16_g31002_MAGBIO Magnolia biondii HOM05D003593 ORTHO05D004064 7.0e-38 161.4 191 52.9
SalBow4G0244 Salvia bowleyana HOM05D003593 ORTHO05D004064 1.6e-37 160.2 182 54.9
Sc03g0009620 Simmondsia chinensis HOM05D003593 ORTHO05D004064 2.7e-37 159.5 191 54.5
FvH4_6g47540 Fragaria vesca HOM05D003593 ORTHO05D004064 4.6e-37 158.7 170 56.5
EL10Ac5g11509 Beta vulgaris HOM05D003593 ORTHO05D004064 7.8e-37 157.9 182 53.8
ClCG06G013760 Citrullus lanatus HOM05D003593 ORTHO05D004064 1.3e-36 157.1 191 52.4
PSO782G1623 Papaver somniferum HOM05D003593 ORTHO05D004064 1.3e-36 157.1 179 55.3
Sopen02g013070 Solanum pennellii HOM05D003593 ORTHO05D004064 3.9e-36 155.6 182 52.7
PSO063G1703 Papaver somniferum HOM05D003593 ORTHO05D004064 5.0e-36 155.2 179 55.3
unitig_22.g5286 Utricularia gibba HOM05D003593 ORTHO05D004064 8.6e-36 154.5 182 53.3
CSS0006561 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 5.6e-35 151.8 210 49.5
MD08G1104600 Malus domestica HOM05D003593 ORTHO05D004064 7.3e-35 151.4 217 47.5
Nitab4.5_0005797g0010 Nicotiana tabacum HOM05D003593 ORTHO05D004064 7.3e-35 151.4 173 56.1
Oeu035605.1 Olea europaea HOM05D003593 ORTHO05D004064 7.3e-35 151.4 183 53.6
ATR0580G077 Amborella trichopoda HOM05D003593 ORTHO05D004064 1.2e-34 150.6 181 51.4
SGA_v2.0_scaffold10G05150 Striga asiatica HOM05D003593 ORTHO05D004064 2.1e-34 149.8 218 46.3
Manes.15G093801 Manihot esculenta HOM05D003593 ORTHO05D004064 4.0e-33 145.6 210 46.7
Zm00001eb252050 Zea mays HOM05D003593 ORTHO05D004064 1.5e-32 143.7 181 52.5
CDE02G1962 Ceratophyllum demersum HOM05D003593 ORTHO05D004064 2.6e-32 142.9 182 48.4
vmacro03823 Vaccinium macrocarpon HOM05D003593 ORTHO05D004064 2.6e-32 142.9 265 39.6
Os09g0272500 Oryza sativa ssp. japonica HOM05D003593 ORTHO05D004064 1.7e-31 140.2 181 48.6
Peaxi162Scf00074g00739 Petunia axillaris HOM05D003593 ORTHO05D004064 1.7e-31 140.2 178 52.2
Os08g0533700 Oryza sativa ssp. japonica HOM05D003593 ORTHO05D004064 6.4e-31 138.3 182 50.0
Zm00001eb036800 Zea mays HOM05D003593 ORTHO05D004064 1.9e-30 136.7 181 50.8
PSO170G1127 Papaver somniferum HOM05D003593 ORTHO05D004064 3.5e-29 132.5 188 50.5
CDE06G1796 Ceratophyllum demersum HOM05D003593 ORTHO05D004064 1.0e-28 131.0 183 46.4
Manes.03G101800 Manihot esculenta HOM05D003593 ORTHO05D004064 1.0e-28 131.0 159 52.2
AUR62029320 Chenopodium quinoa HOM05D003593 ORTHO05D004064 1.3e-28 130.6 154 53.9
PSO170G4544 Papaver somniferum HOM05D003593 ORTHO05D004064 3.9e-28 129.0 193 49.2
Sopen02g018530 Solanum pennellii HOM05D003593 ORTHO05D004064 1.1e-27 127.5 154 52.6
HanXRQChr10g0281101 Helianthus annuus HOM05D003593 ORTHO05D004064 1.9e-27 126.7 163 48.5
Thhalv10002036m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 2.5e-27 126.3 75 89.3
HPP92_006993 Vanilla planifolia HOM05D003593 ORTHO05D004064 1.4e-25 120.6 172 45.3
Thecc.10G141700 Theobroma cacao HOM05D003593 ORTHO05D004064 6.8e-25 118.2 146 51.4
SMO288G0003 Selaginella moellendorffii HOM05D003593 ORTHO05D004064 1.4e-22 110.5 181 40.3
Sed0017744 Sechium edule HOM05D003593 ORTHO05D004064 4.1e-22 109.0 182 42.9
Lj2g0027873 Lotus japonicus HOM05D003593 ORTHO05D004064 2.7e-21 106.3 112 53.6
SMO352G0089 Selaginella moellendorffii HOM05D003593 ORTHO05D004064 2.7e-21 106.3 179 44.7
Ah.04g164950 Amaranthus hybridus HOM05D003593 ORTHO05D004064 1.3e-20 104.0 214 38.8
CSS0019003 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 1.1e-19 100.9 134 50.7
CSS0014982 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 1.5e-19 100.5 132 52.3
MD16G1244000 Malus domestica HOM05D003593 ORTHO05D004064 1.2e-18 97.4 73 65.8
AagrBONN_evm.TU.Sc2ySwM_368.144 Anthoceros agrestis HOM05D003593 ORTHO05D004064 1.6e-18 97.1 196 38.8
Mapoly0001s0213 Marchantia polymorpha HOM05D003593 ORTHO05D004064 3.1e-17 92.8 193 35.2
Actinidia14176 Actinidia chinensis HOM05D003593 ORTHO05D004064 8.9e-17 91.3 129 49.6
Sed0025908 Sechium edule HOM05D003593 ORTHO05D004064 2.0e-16 90.1 135 48.9
Glyma.02G282202 Glycine max HOM05D003593 ORTHO05D004064 3.4e-16 89.4 150 45.3
Os02g0306100 Oryza sativa ssp. japonica HOM05D003593 ORTHO05D004064 3.4e-16 89.4 80 57.5
Os08g0534350 Oryza sativa ssp. japonica HOM05D003593 ORTHO05D004064 4.9e-15 85.5 80 56.2
Os08g0535000 Oryza sativa ssp. japonica HOM05D003593 ORTHO05D004064 4.9e-15 85.5 80 56.2
Pp3c17_5110 Physcomitrium patens HOM05D003593 ORTHO05D004064 1.1e-14 84.3 208 33.7
CSS0030751 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 1.9e-14 83.6 153 39.9
Haze_22057 Corylus avellana HOM05D003593 ORTHO05D004064 5.4e-14 82.0 52 76.9
MD16G1244100 Malus domestica HOM05D003593 ORTHO05D004064 5.4e-14 82.0 83 60.2
BolC8t50716H Brassica oleracea HOM05D003593 ORTHO05D004064 1.0e-12 77.8 45 88.9
Rhsim08G0153900 Rhododendron simsii HOM05D003593 ORTHO05D004064 2.5e-11 73.2 195 35.4
Haze_22055 Corylus avellana HOM05D003593 ORTHO05D004064 2.4e-09 66.6 150 38.0
Atru.chr10.1467 Acer truncatum HOM05D003593 ORTHO05D004064 4.0e-09 65.9 54 66.7
CBR_g26495 Chara braunii HOM05D003593 ORTHO05D004064 6.9e-09 65.1 204 31.9
Lsat_1_v5_gn_7_57621 Lactuca sativa HOM05D001776 ORTHO05D001771 1.5e-08 63.9 69 55.1
SEGI_30783 Sequoiadendron giganteum HOM05D003593 ORTHO05D004064 1.5e-08 63.9 143 39.9
CARHR058330 Cardamine hirsuta HOM05D003593 ORTHO05D004064 1.3e-07 60.8 64 60.9
DCAR_023430 Daucus carota HOM05D005662 ORTHO05D004064 8.4e-07 58.2 87 50.6
Solyc02g062120.3 Solanum lycopersicum HOM05D003593 ORTHO05D004064 1.1e-06 57.8 81 44.4
Aqoxy5G03192 Aquilegia oxysepala HOM05D003593 ORTHO05D004064 3.2e-06 56.2 153 32.0
SEGI_34697 Sequoiadendron giganteum HOM05D003593 ORTHO05D004064 3.2e-06 56.2 79 49.4


User provided reference genes

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