Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G62450 Arabidopsis lyrata HOM05D004903 ORTHO05D005849 9.0e-140 500.4 272 100.0
AT1G53760 Arabidopsis thaliana HOM05D004903 ORTHO05D005849 1.3e-135 486.5 273 96.3
CARHR044070 Cardamine hirsuta HOM05D004903 ORTHO05D005849 1.0e-127 460.3 279 86.7
Carub.0001s4303 Capsella rubella HOM05D004903 ORTHO05D005849 3.7e-125 451.8 276 90.6
BcaC08g43554 Brassica carinata HOM05D004903 ORTHO05D005849 1.4e-124 449.9 272 83.8
BraA06t23313Z Brassica rapa HOM05D004903 ORTHO05D005849 1.4e-124 449.9 272 84.2
A06p00790 Brassica napus HOM05D004903 ORTHO05D005849 6.9e-124 447.6 272 83.8
C06p09540 Brassica napus HOM05D004903 ORTHO05D005849 2.6e-123 445.7 272 83.5
BolC6t36028H Brassica oleracea HOM05D004903 ORTHO05D005849 2.6e-123 445.7 272 83.5
BcaB07g33303 Brassica carinata HOM05D004903 ORTHO05D005849 4.5e-123 444.9 272 82.4
Thhalv10011709m.g Eutrema salsugineum HOM05D004903 ORTHO05D005849 3.8e-122 441.8 275 83.3
A05p17920 Brassica napus HOM05D004903 ORTHO05D005849 4.9e-122 441.4 272 82.7
BraA05t20686Z Brassica rapa HOM05D004903 ORTHO05D005849 1.4e-121 439.9 272 82.4
Sp1g40280 Schrenkiella parvula HOM05D004903 ORTHO05D005849 3.2e-121 438.7 273 88.3
BcaB02g10893 Brassica carinata HOM05D004903 ORTHO05D005849 7.1e-121 437.6 272 81.6
BcaC08g44129 Brassica carinata HOM05D004903 ORTHO05D005849 1.3e-119 433.3 273 81.3
C06p15280 Brassica napus HOM05D004903 ORTHO05D005849 1.3e-119 433.3 273 81.3
BolC6t36703H Brassica oleracea HOM05D004903 ORTHO05D005849 8.7e-119 430.6 273 80.6
THA.LOC104810400 Tarenaya hassleriana HOM05D004903 ORTHO05D005849 4.2e-105 385.2 272 72.1
Aa31LG10G1530 Aethionema arabicum HOM05D000070 ORTHO05D003301 1.8e-100 369.8 250 76.4
Gorai.010G236300 Gossypium raimondii HOM05D004903 ORTHO05D005849 7.0e-92 341.3 274 65.0
Gohir.D06G202400 Gossypium hirsutum HOM05D004903 ORTHO05D005849 9.1e-92 340.9 274 65.0
Thecc.06G131400 Theobroma cacao HOM05D004903 ORTHO05D005849 9.1e-92 340.9 276 62.0
Atru.chr1.4170 Acer truncatum HOM05D004903 ORTHO05D005849 2.0e-91 339.7 273 63.7
Duzib160G0805 Durio zibethinus HOM05D004903 ORTHO05D005849 7.7e-91 337.8 276 63.4
TAR624G0709 Trochodendron aralioides HOM05D004903 ORTHO05D005849 1.3e-90 337.0 276 60.5
RcHm_v2.0_Chr2g0148141 Rosa chinensis HOM05D004903 ORTHO05D005849 1.5e-89 333.6 287 59.9
Gohir.A06G142500 Gossypium hirsutum HOM05D004903 ORTHO05D005849 2.5e-89 332.8 276 63.4
Gorai.010G172600 Gossypium raimondii HOM05D004903 ORTHO05D005849 3.2e-89 332.4 276 63.4
MD09G1171800 Malus domestica HOM05D004903 ORTHO05D005849 1.2e-88 330.5 278 60.4
Hund18627 Selenicereus undatus HOM05D004903 ORTHO05D005849 2.1e-88 329.7 272 60.3
COL.COLO4_30880 Corchorus olitorius HOM05D004903 ORTHO05D005849 2.7e-88 329.3 194 79.9
Gohir.A06G194700 Gossypium hirsutum HOM05D004903 ORTHO05D005849 4.7e-88 328.6 273 64.5
FAN09G2808 Fragaria x ananassa HOM05D004903 ORTHO05D005849 6.1e-88 328.2 282 59.6
MD17G1155200 Malus domestica HOM05D004903 ORTHO05D005849 6.1e-88 328.2 279 59.5
FAN14G1686 Fragaria x ananassa HOM05D004903 ORTHO05D005849 8.0e-88 327.8 282 59.9
EL10Ac7g18248 Beta vulgaris HOM05D004903 ORTHO05D005849 4.0e-87 325.5 276 60.1
CiPaw.01G210600 Carya illinoinensis HOM05D004903 ORTHO05D005849 4.0e-87 325.5 276 62.0
Prupe.3G030200 Prunus persica HOM05D004903 ORTHO05D005849 4.0e-87 325.5 274 59.5
FAN02G0327 Fragaria x ananassa HOM05D004903 ORTHO05D005849 6.7e-87 324.7 278 60.1
FAN14G0435 Fragaria x ananassa HOM05D004903 ORTHO05D005849 6.7e-87 324.7 278 60.1
GSVIVG01016657001 Vitis vinifera HOM05D004903 ORTHO05D005849 6.7e-87 324.7 271 60.9
ClCG09G001430 Citrullus lanatus HOM05D004903 ORTHO05D005849 8.8e-87 324.3 284 60.2
Manes.11G011500 Manihot esculenta HOM05D004903 ORTHO05D005849 8.8e-87 324.3 273 59.7
PGSC0003DMG400004869 Solanum tuberosum HOM05D004903 ORTHO05D005849 8.8e-87 324.3 274 60.2
FvH4_6g36070 Fragaria vesca HOM05D004903 ORTHO05D005849 1.5e-86 323.6 284 58.8
QL05p000658 Quercus lobata HOM05D004903 ORTHO05D005849 4.4e-86 322.0 276 60.9
Dinv20374 Davidia involucrata HOM05D004903 ORTHO05D005849 1.3e-85 320.5 277 58.8
QL05p000751 Quercus lobata HOM05D004903 ORTHO05D005849 1.3e-85 320.5 274 60.9
AUR62001391 Chenopodium quinoa HOM05D004903 ORTHO05D005849 2.2e-85 319.7 279 58.8
Ciclev10026250m.g Citrus clementina HOM05D004903 ORTHO05D005849 4.8e-85 318.5 275 58.9
CAN.G1633.2 Capsicum annuum HOM05D004903 ORTHO05D005849 6.3e-85 318.2 276 59.8
CSS0022789 Camellia sinensis var. sinensis HOM05D004903 ORTHO05D005849 1.4e-84 317.0 274 59.5
CANSAT56G0172 Cannabis sativa HOM05D004903 ORTHO05D005849 2.4e-84 316.2 273 58.6
Potri.001G161800 Populus trichocarpa HOM05D004903 ORTHO05D005849 3.1e-84 315.8 276 57.2
Solyc06g063130.3 Solanum lycopersicum HOM05D004903 ORTHO05D005849 5.3e-84 315.1 274 58.8
Actinidia25997 Actinidia chinensis HOM05D004903 ORTHO05D005849 9.1e-84 314.3 276 57.2
CsaV3_7G033900 Cucumis sativus L. HOM05D004903 ORTHO05D005849 1.2e-83 313.9 284 57.7
TWI59G0350 Tripterygium wilfordii HOM05D004903 ORTHO05D005849 1.6e-83 313.5 283 56.5
Lj3g0025901 Lotus japonicus HOM05D004903 ORTHO05D005849 3.5e-83 312.4 273 56.8
Lalb_Chr17g0343171 Lupinus albus HOM05D004903 ORTHO05D005849 3.5e-83 312.4 268 55.6
Sopen06g022580 Solanum pennellii HOM05D004903 ORTHO05D005849 1.0e-82 310.8 274 58.4
Nitab4.5_0006190g0020 Nicotiana tabacum HOM05D004903 ORTHO05D005849 1.7e-82 310.1 273 59.3
Peaxi162Scf00207g01534 Petunia axillaris HOM05D004903 ORTHO05D005849 6.5e-82 308.1 273 57.9
HanXRQChr12g0360041 Helianthus annuus HOM05D004903 ORTHO05D005849 1.1e-81 307.4 268 59.0
Glyma.16G015600 Glycine max HOM05D004903 ORTHO05D005849 3.2e-81 305.8 274 55.1
Glyma.07G046600 Glycine max HOM05D004903 ORTHO05D005849 9.4e-81 304.3 273 53.5
Actinidia24416 Actinidia chinensis HOM05D004903 ORTHO05D005849 1.2e-80 303.9 282 55.3
Aqoxy7G00919 Aquilegia oxysepala HOM05D004903 ORTHO05D005849 2.7e-80 302.8 293 53.9
Nn8g38503 Nelumbo nucifera HOM05D004903 ORTHO05D005849 1.8e-79 300.1 273 56.0
Eucgr.J02586 Eucalyptus grandis HOM05D004903 ORTHO05D005849 2.3e-79 299.7 274 58.4
Sc12g0011010 Simmondsia chinensis HOM05D004903 ORTHO05D005849 2.3e-79 299.7 195 72.8
Sed0027894 Sechium edule HOM05D004903 ORTHO05D005849 3.0e-79 299.3 286 56.3
arahy.Tifrunner.gnm1.ann1.97GHXX Arachis hypogaea HOM05D004903 ORTHO05D005849 8.8e-79 297.7 272 55.9
Cpa.g.sc25.203 Carica papaya HOM05D004903 ORTHO05D005849 8.8e-79 297.7 185 77.3
PSO724G0850 Papaver somniferum HOM05D004903 ORTHO05D005849 3.4e-78 295.8 267 54.7
PSO135G0609 Papaver somniferum HOM05D004903 ORTHO05D005849 4.4e-78 295.4 267 54.3
Medtr8g023500 Medicago truncatula HOM05D004903 ORTHO05D005849 5.7e-78 295.0 279 53.0
Phvul.010G122300 Phaseolus vulgaris HOM05D004903 ORTHO05D005849 5.7e-78 295.0 270 52.6
Psat4g164720 Pisum sativum HOM05D004903 ORTHO05D005849 9.8e-78 294.3 272 52.6
DCAR_022636 Daucus carota HOM05D004903 ORTHO05D005849 1.3e-77 293.9 277 54.9
Gorai.011G054300 Gossypium raimondii HOM05D004903 ORTHO05D005849 1.3e-77 293.9 195 71.3
Lsat_1_v5_gn_5_137641 Lactuca sativa HOM05D004903 ORTHO05D005849 2.2e-77 293.1 264 56.4
arahy.Tifrunner.gnm1.ann1.AA2XIP Arachis hypogaea HOM05D004903 ORTHO05D005849 4.8e-77 292.0 283 55.1
Nitab4.5_0010570g0050 Nicotiana tabacum HOM05D004903 ORTHO05D005849 6.3e-77 291.6 271 56.8
arahy.Tifrunner.gnm1.ann1.HDKQ14 Arachis hypogaea HOM05D004903 ORTHO05D005849 8.3e-77 291.2 300 53.3
arahy.Tifrunner.gnm1.ann1.3XU7EE Arachis hypogaea HOM05D004903 ORTHO05D005849 4.1e-76 288.9 271 55.7
Migut.I01143 Erythranthe guttata HOM05D004903 ORTHO05D005849 5.4e-76 288.5 276 54.0
Lj5A28T47 Lonicera japonica HOM05D004903 ORTHO05D005849 5.4e-76 288.5 330 49.1
Rhsim08G0245600 Rhododendron simsii HOM05D004903 ORTHO05D005849 7.0e-76 288.1 196 70.4
arahy.Tifrunner.gnm1.ann1.M9BVNS Arachis hypogaea HOM05D004903 ORTHO05D005849 2.0e-75 286.6 272 54.8
SalBow6G3230 Salvia bowleyana HOM05D004903 ORTHO05D005849 1.7e-74 283.5 272 53.3
vmacro18714 Vaccinium macrocarpon HOM05D004903 ORTHO05D005849 1.7e-74 283.5 275 53.8
arahy.Tifrunner.gnm1.ann1.ZQ2A8X Arachis hypogaea HOM05D004903 ORTHO05D005849 8.5e-74 281.2 292 52.1
HPP92_000828 Vanilla planifolia HOM05D004903 ORTHO05D005849 1.9e-73 280.0 268 50.7
Zm00001eb207930 Zea mays HOM05D004903 ORTHO05D005849 7.2e-73 278.1 274 51.8
arahy.Tifrunner.gnm1.ann1.5Z4EMJ Arachis hypogaea HOM05D004903 ORTHO05D005849 9.4e-73 277.7 271 53.9
MSTRG.10905 Avicennia marina HOM05D004903 ORTHO05D005849 2.7e-72 276.2 284 49.6
Cc04_g00600 Coffea canephora HOM05D004903 ORTHO05D005849 8.0e-72 274.6 279 50.9
Ca_23466_v3 Cicer arietinum L. HOM05D004903 ORTHO05D005849 1.0e-71 274.2 196 65.3
MELO3C024303.2 Cucumis melo HOM05D004903 ORTHO05D005849 1.0e-71 274.2 193 68.4
Sabra03G0044200 Salix brachista HOM05D004903 ORTHO05D005849 3.0e-71 272.7 303 49.2
MBI17_g12875_MAGBIO Magnolia biondii HOM05D004903 ORTHO05D005849 8.8e-71 271.2 272 49.3
TPR.G15248 Trifolium pratense HOM05D004903 ORTHO05D005849 1.2e-70 270.8 198 63.6
AUR62025608 Chenopodium quinoa HOM05D004903 ORTHO05D005849 3.4e-70 269.2 266 54.9
Os02g0152600 Oryza sativa ssp. japonica HOM05D004903 ORTHO05D005849 7.5e-70 268.1 280 49.6
VMungo0331G0875 Vigna mungo HOM05D004903 ORTHO05D005849 6.3e-69 265.0 195 63.6
ATR0006G080 Amborella trichopoda HOM05D004903 ORTHO05D005849 1.8e-68 263.5 264 48.9
Hma1.2p1_1999F.1_g310500 Hydrangea macrophylla HOM05D004903 ORTHO05D005849 4.1e-68 262.3 184 67.4
SGA_v2.0_scaffold71G23946 Striga asiatica HOM05D004903 ORTHO05D005849 7.0e-68 261.5 283 51.6
unitig_32.g11002 Utricularia gibba HOM05D004903 ORTHO05D005849 7.7e-67 258.1 278 48.2
Oeu053414.1 Olea europaea HOM05D004903 ORTHO05D005849 1.0e-66 257.7 200 62.0
Sabra01G0130700 Salix brachista HOM05D004903 ORTHO05D005849 2.3e-66 256.5 294 49.3
Cfa003452 Carpinus fangiana HOM05D004903 ORTHO05D005849 1.2e-64 250.8 206 62.6
ECA234G0009 Erigeron canadensis HOM05D004903 ORTHO05D005849 1.2e-64 250.8 216 58.8
Gohir.A10G050050 Gossypium hirsutum HOM05D004903 ORTHO05D005849 6.1e-64 248.4 214 60.3
Oeu019513.1 Olea europaea HOM05D004903 ORTHO05D005849 5.7e-62 241.9 190 62.6
Dinv37814 Davidia involucrata HOM05D004903 ORTHO05D005849 2.9e-61 239.6 208 58.2
Gohir.D10G050650 Gossypium hirsutum HOM05D004903 ORTHO05D005849 7.8e-59 231.5 161 68.3
Sed0021101 Sechium edule HOM05D004903 ORTHO05D005849 3.9e-58 229.2 211 57.3
CDE04G1042 Ceratophyllum demersum HOM05D004903 ORTHO05D005849 4.3e-57 225.7 194 56.2
CDE06G0378 Ceratophyllum demersum HOM05D004903 ORTHO05D005849 9.5e-57 224.6 194 54.1
Hma1.2p1_0090F.1_g045680 Hydrangea macrophylla HOM05D004903 ORTHO05D005849 2.0e-54 216.9 215 52.1
BcaB02g07096 Brassica carinata HOM05D000219 ORTHO05D000226 4.1e-52 209.1 112 91.1
Actinidia31143 Actinidia chinensis HOM05D004903 ORTHO05D005849 7.0e-52 208.4 213 51.2
BcaB07g32153 Brassica carinata HOM05D004903 ORTHO05D005849 3.5e-51 206.1 116 87.1
THA.LOC104822767 Tarenaya hassleriana HOM05D006671 ORTHO05D008637 1.1e-47 194.5 202 55.0
Mapoly0021s0048 Marchantia polymorpha HOM05D004903 ORTHO05D005849 1.6e-43 180.6 280 36.1
Gohir.D06G148232 Gossypium hirsutum HOM05D004903 ORTHO05D005849 1.9e-41 173.7 116 71.6
AagrBONN_evm.TU.Sc2ySwM_228.2429 Anthoceros agrestis HOM05D004903 ORTHO05D005849 3.3e-41 172.9 216 39.8
CBR_g34164 Chara braunii HOM05D004903 ORTHO05D005849 2.3e-34 150.2 202 38.1
Haze_16144 Corylus avellana HOM05D003205 ORTHO05D003746 2.4e-31 140.2 191 45.0
Haze_16148 Corylus avellana HOM05D003205 ORTHO05D003746 4.0e-31 139.4 191 45.0
arahy.Tifrunner.gnm1.ann1.AT31DH Arachis hypogaea HOM05D004903 ORTHO05D005849 6.9e-31 138.7 107 65.4
arahy.Tifrunner.gnm1.ann1.RS9BE1 Arachis hypogaea HOM05D004903 ORTHO05D005849 1.2e-30 137.9 174 46.0
Pp3c13_9790 Physcomitrium patens HOM05D004903 ORTHO05D005849 1.3e-29 134.4 269 30.5
Gohir.D02G109866 Gossypium hirsutum HOM05D004903 ORTHO05D005849 1.0e-26 124.8 85 65.9
CDE06G0441 Ceratophyllum demersum HOM05D004903 ORTHO05D005849 3.2e-20 103.2 91 52.7
SEGI_28585 Sequoiadendron giganteum HOM05D004903 ORTHO05D005849 4.2e-20 102.8 122 43.4
SEGI_38260 Sequoiadendron giganteum HOM05D004903 ORTHO05D005849 4.2e-20 102.8 131 42.0
Hma1.2p1_0090F.1_g045690 Hydrangea macrophylla HOM05D004903 ORTHO05D005849 5.3e-15 85.9 69 59.4
Cre08.g358557 Chlamydomonas reinhardtii HOM05D004903 ORTHO05D005849 1.2e-14 84.7 196 26.5
PRCOL_00005128 Prasinoderma coloniale HOM05D004903 ORTHO05D005849 1.1e-12 78.2 135 40.0
TPR.G26438 Trifolium pratense HOM05D004903 ORTHO05D005849 9.3e-12 75.1 71 46.5
Glyma.16G014900 Glycine max HOM05D004903 ORTHO05D005849 7.4e-09 65.5 97 38.1
arahy.Tifrunner.gnm1.ann1.1E2DFU Arachis hypogaea HOM05D001485 ORTHO05D005849 1.6e-08 64.3 46 71.7
Actinidia21845 Actinidia chinensis HOM05D004903 ORTHO05D005849 2.8e-08 63.5 44 63.6
MBI17_g12881_MAGBIO Magnolia biondii HOM05D007686 ORTHO05D009709 2.8e-08 63.5 56 53.6
Duzib192G1079 Durio zibethinus HOM05D004903 ORTHO05D005849 3.7e-08 63.2 205 28.3
Cpa.g.sc25.204 Carica papaya HOM05D004903 ORTHO05D005849 1.1e-07 61.6 106 36.8
MCO07G235 Micromonas commoda HOM05D004903 ORTHO05D005849 5.3e-07 59.3 108 30.6


User provided reference genes

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