Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G62410 Arabidopsis lyrata HOM05D006671 ORTHO05D008637 0.0e+00 1086.2 532 100.0
Carub.0001s4299 Capsella rubella HOM05D006671 ORTHO05D008637 4.0e-293 1010.7 532 92.9
AT1G53710 Arabidopsis thaliana HOM05D006671 ORTHO05D008637 5.8e-292 1006.9 532 92.9
Thhalv10011378m.g Eutrema salsugineum HOM05D006671 ORTHO05D008637 2.5e-279 964.9 533 88.2
Sp1g40250 Schrenkiella parvula HOM05D006671 ORTHO05D008637 3.5e-273 944.5 533 86.3
CARHR044010 Cardamine hirsuta HOM05D006671 ORTHO05D008637 9.0e-269 929.9 530 86.0
BolC3t21495H Brassica oleracea HOM05D006671 ORTHO05D008637 2.3e-264 915.2 535 84.3
A08p01430 Brassica napus HOM05D006671 ORTHO05D008637 2.5e-263 911.8 533 84.6
BcaB04g17063 Brassica carinata HOM05D006671 ORTHO05D008637 3.3e-263 911.4 530 84.5
BcaC01g01410 Brassica carinata HOM05D006671 ORTHO05D008637 7.3e-263 910.2 530 84.3
C03p91740 Brassica napus HOM05D006671 ORTHO05D008637 2.8e-262 908.3 530 84.2
BraA08t32194Z Brassica rapa HOM05D006671 ORTHO05D008637 4.8e-262 907.5 533 84.1
Aa31LG10G1550 Aethionema arabicum HOM05D006671 ORTHO05D008637 1.8e-253 879.0 532 80.1
Potri.001G161100 Populus trichocarpa HOM05D006671 ORTHO05D008637 6.8e-184 647.9 536 57.6
Thecc.06G048900 Theobroma cacao HOM05D006671 ORTHO05D008637 1.2e-183 647.1 543 57.6
Manes.11G010600 Manihot esculenta HOM05D006671 ORTHO05D008637 5.8e-183 644.8 543 57.6
CiPaw.03G010100 Carya illinoinensis HOM05D006671 ORTHO05D008637 9.2e-181 637.5 542 57.9
COL.COLO4_26801 Corchorus olitorius HOM05D006671 ORTHO05D008637 3.5e-180 635.6 540 58.3
Gohir.D13G119900 Gossypium hirsutum HOM05D006671 ORTHO05D008637 2.3e-179 632.9 544 56.2
Atru.chr1.4182 Acer truncatum HOM05D006671 ORTHO05D008637 1.1e-178 630.6 536 57.8
Gorai.013G134300 Gossypium raimondii HOM05D006671 ORTHO05D008637 1.9e-178 629.8 548 56.2
Phvul.010G121800 Phaseolus vulgaris HOM05D006671 ORTHO05D008637 1.9e-178 629.8 543 57.1
Lalb_Chr10g0101031 Lupinus albus HOM05D006671 ORTHO05D008637 2.8e-177 625.9 544 56.8
Glyma.16G015100 Glycine max HOM05D006671 ORTHO05D008637 1.1e-176 624.0 546 56.0
TPR.G26443 Trifolium pratense HOM05D006671 ORTHO05D008637 2.3e-176 622.9 537 57.0
Duzib160G0342 Durio zibethinus HOM05D006671 ORTHO05D008637 3.4e-175 619.0 543 55.6
Cpa.g.sc229.10 Carica papaya HOM05D006671 ORTHO05D008637 4.4e-175 618.6 542 55.9
CSS0038482 Camellia sinensis var. sinensis HOM05D006671 ORTHO05D008637 1.3e-174 617.1 532 56.0
Glyma.07G047100 Glycine max HOM05D006671 ORTHO05D008637 1.3e-174 617.1 543 55.8
Ciclev10025368m.g Citrus clementina HOM05D006671 ORTHO05D008637 3.7e-174 615.5 535 56.1
Psat4g165440 Pisum sativum HOM05D006671 ORTHO05D008637 3.7e-174 615.5 537 56.4
TAR623G0926 Trochodendron aralioides HOM05D006671 ORTHO05D008637 8.3e-174 614.4 536 55.4
Prupe.3G029600 Prunus persica HOM05D006671 ORTHO05D008637 1.4e-173 613.6 528 56.8
MD09G1171100 Malus domestica HOM05D006671 ORTHO05D008637 1.9e-173 613.2 530 57.4
Rhsim08G0246200 Rhododendron simsii HOM05D006671 ORTHO05D008637 1.2e-172 610.5 544 54.6
vmacro18708 Vaccinium macrocarpon HOM05D006671 ORTHO05D008637 2.7e-172 609.4 539 55.8
Lj3g0013980 Lotus japonicus HOM05D006671 ORTHO05D008637 1.7e-171 606.7 549 53.7
Sc12g0010960 Simmondsia chinensis HOM05D006671 ORTHO05D008637 6.6e-171 604.7 534 54.3
RcHm_v2.0_Chr2g0148251 Rosa chinensis HOM05D006671 ORTHO05D008637 9.5e-170 600.9 531 57.8
Medtr8g023620 Medicago truncatula HOM05D006671 ORTHO05D008637 3.6e-169 599.0 539 54.9
CANSAT56G3116 Cannabis sativa HOM05D006671 ORTHO05D008637 1.4e-168 597.0 535 56.3
Sabra01G0131200 Salix brachista HOM05D006671 ORTHO05D008637 6.8e-168 594.7 578 52.4
FvH4_6g36250 Fragaria vesca HOM05D006671 ORTHO05D008637 8.3e-166 587.8 527 57.3
Eucgr.I02172 Eucalyptus grandis HOM05D006671 ORTHO05D008637 1.4e-165 587.0 529 54.8
TWI59G0357 Tripterygium wilfordii HOM05D006671 ORTHO05D008637 1.9e-165 586.6 535 55.5
FAN14G1234 Fragaria x ananassa HOM05D006671 ORTHO05D008637 3.2e-165 585.9 527 57.1
PGR119G0898 Punica granatum HOM05D006671 ORTHO05D008637 3.2e-165 585.9 538 53.3
EL10Ac7g18235 Beta vulgaris HOM05D006671 ORTHO05D008637 4.1e-165 585.5 529 54.1
Aqoxy2G04033 Aquilegia oxysepala HOM05D006671 ORTHO05D008637 6.0e-164 581.6 539 53.6
Sopen12g024210 Solanum pennellii HOM05D006671 ORTHO05D008637 3.0e-163 579.3 533 52.5
PGSC0003DMG402028844 Solanum tuberosum HOM05D006671 ORTHO05D008637 1.9e-162 576.6 538 52.8
Cc04_g00530 Coffea canephora HOM05D006671 ORTHO05D008637 6.2e-161 571.6 540 52.4
Solyc12g055740.2 Solanum lycopersicum HOM05D006671 ORTHO05D008637 1.1e-160 570.9 533 52.2
ECA234G0268 Erigeron canadensis HOM05D006671 ORTHO05D008637 5.2e-160 568.5 527 51.6
CAN.G390.42 Capsicum annuum HOM05D006671 ORTHO05D008637 2.0e-159 566.6 534 51.7
PSO017G0187 Papaver somniferum HOM05D006671 ORTHO05D008637 2.6e-159 566.2 539 53.6
arahy.Tifrunner.gnm1.ann1.NMV212 Arachis hypogaea HOM05D006671 ORTHO05D008637 3.4e-159 565.8 538 53.0
Nn8g41287 Nelumbo nucifera HOM05D006671 ORTHO05D008637 3.4e-159 565.8 536 51.9
arahy.Tifrunner.gnm1.ann1.YS0GDU Arachis hypogaea HOM05D006671 ORTHO05D008637 9.9e-159 564.3 538 52.4
Actinidia24409 Actinidia chinensis HOM05D006671 ORTHO05D008637 2.2e-158 563.1 499 55.3
DCAR_007665 Daucus carota HOM05D006671 ORTHO05D008637 2.2e-158 563.1 554 50.7
FAN09G2187 Fragaria x ananassa HOM05D006671 ORTHO05D008637 2.9e-158 562.8 527 55.6
Migut.D00903 Erythranthe guttata HOM05D006671 ORTHO05D008637 1.9e-157 560.1 535 51.6
SalBow7G2314 Salvia bowleyana HOM05D006671 ORTHO05D008637 2.4e-157 559.7 535 52.5
PGSC0003DMG401028844 Solanum tuberosum HOM05D006671 ORTHO05D008637 2.7e-156 556.2 533 51.8
Haze_14039 Corylus avellana HOM05D006671 ORTHO05D008637 7.8e-156 554.7 632 47.2
HanXRQChr10g0311581 Helianthus annuus HOM05D006671 ORTHO05D008637 7.8e-156 554.7 528 52.7
MSTRG.9549 Avicennia marina HOM05D006671 ORTHO05D008637 2.3e-155 553.1 531 51.8
Lj5C27T5 Lonicera japonica HOM05D006671 ORTHO05D008637 2.3e-155 553.1 504 54.4
FAN14G2634 Fragaria x ananassa HOM05D006671 ORTHO05D008637 3.4e-151 539.3 530 54.3
Zm00001eb392730 Zea mays HOM05D006671 ORTHO05D008637 2.9e-150 536.2 540 51.3
MBI13_g05970_MAGBIO Magnolia biondii HOM05D006671 ORTHO05D008637 5.4e-149 531.9 512 52.9
Os03g0397300 Oryza sativa ssp. japonica HOM05D006671 ORTHO05D008637 9.3e-149 531.2 531 51.0
Ah.08g217540 Amaranthus hybridus HOM05D006671 ORTHO05D008637 1.6e-148 530.4 530 51.7
AUR62001377 Chenopodium quinoa HOM05D006671 ORTHO05D008637 3.0e-147 526.2 483 53.2
SGA_v2.0_scaffold4G02101 Striga asiatica HOM05D006671 ORTHO05D008637 6.6e-147 525.0 536 50.2
HPP92_002242 Vanilla planifolia HOM05D006671 ORTHO05D008637 9.6e-146 521.2 532 49.8
THA.LOC104822767 Tarenaya hassleriana HOM05D006671 ORTHO05D008637 4.8e-145 518.8 354 73.2
AUR62044064 Chenopodium quinoa HOM05D006671 ORTHO05D008637 1.8e-144 516.9 471 53.5
GSVIVG01026409001 Vitis vinifera HOM05D006671 ORTHO05D008637 2.0e-143 513.5 758 39.2
Lsat_1_v5_gn_5_137600 Lactuca sativa HOM05D006671 ORTHO05D008637 9.9e-143 511.1 516 49.4
PSO170G0973 Papaver somniferum HOM05D006671 ORTHO05D008637 4.2e-141 505.8 478 54.6
CDE06G0010 Ceratophyllum demersum HOM05D006671 ORTHO05D008637 6.0e-140 501.9 475 53.3
BcaNung02916 Brassica carinata HOM05D006671 ORTHO05D008637 5.5e-133 478.8 504 54.8
unitig_699.g19656 Utricularia gibba HOM05D006671 ORTHO05D001254 3.0e-131 473.0 532 47.0
Nitab4.5_0003469g0010 Nicotiana tabacum HOM05D006671 ORTHO05D008637 2.5e-130 469.9 539 46.0
Dinv20369 Davidia involucrata HOM05D006671 ORTHO05D008637 4.8e-129 465.7 367 59.9
Actinidia33812 Actinidia chinensis HOM05D006671 ORTHO05D008637 1.8e-128 463.8 529 47.3
Nitab4.5_0000357g0220 Nicotiana tabacum HOM05D006671 ORTHO05D008637 5.8e-127 458.8 533 44.7
SEGI_35568 Sequoiadendron giganteum HOM05D006671 ORTHO05D008637 2.8e-121 439.9 441 50.3
Pp3c21_8010 Physcomitrium patens HOM05D006671 ORTHO05D008637 5.5e-117 425.6 524 43.3
SMO347G0345 Selaginella moellendorffii HOM05D006671 ORTHO05D008637 5.3e-112 409.1 531 42.6
AagrBONN_evm.TU.Sc2ySwM_362.1979 Anthoceros agrestis HOM05D006671 ORTHO05D008637 1.4e-109 401.0 539 41.0
Peaxi162Scf00177g00616 Petunia axillaris HOM05D006671 ORTHO05D008637 4.7e-108 396.0 531 41.2
Ca_23471_v3 Cicer arietinum L. HOM05D006671 ORTHO05D008637 1.2e-103 381.3 471 44.8
VMungo0331G0057 Vigna mungo HOM05D006671 ORTHO05D008637 1.2e-100 371.3 298 57.7
QL03p047059 Quercus lobata HOM05D006671 ORTHO05D008637 3.7e-89 333.2 261 59.0
Hma1.2p1_1104F.1_g257490 Hydrangea macrophylla HOM05D006671 ORTHO05D008637 1.0e-86 325.1 259 58.3
THA.LOC104803433 Tarenaya hassleriana HOM05D006671 ORTHO05D008637 5.5e-85 319.3 185 79.5
QL03p047068 Quercus lobata HOM05D006671 ORTHO05D008637 2.4e-80 303.9 275 55.3
Mapoly0048s0109 Marchantia polymorpha HOM05D006671 ORTHO05D008637 4.5e-79 299.7 531 33.1
Hma1.2p1_1104F.1_g257500 Hydrangea macrophylla HOM05D006671 ORTHO05D008637 5.0e-78 296.2 265 56.6
FAN02G1271 Fragaria x ananassa HOM05D006671 ORTHO05D008637 5.2e-75 286.2 321 50.8
Oeu006761.2 Olea europaea HOM05D006671 ORTHO05D008637 2.0e-74 284.3 281 50.5
Gohir.A13G116750 Gossypium hirsutum HOM05D006671 ORTHO05D008637 3.2e-72 276.9 207 59.9
Gohir.A13G116801 Gossypium hirsutum HOM05D006671 ORTHO05D008637 1.7e-65 254.6 257 52.1
MD17G1156100 Malus domestica HOM05D006671 ORTHO05D008637 1.2e-60 238.4 442 36.4
ATR0006G018 Amborella trichopoda HOM05D006671 ORTHO05D008637 1.2e-58 231.9 264 45.5
SEGI_04788 Sequoiadendron giganteum HOM05D006671 ORTHO05D008637 6.6e-54 216.1 285 43.5
Actinidia21851 Actinidia chinensis HOM05D006671 ORTHO05D008637 4.1e-48 196.8 188 54.3
MCO09G741 Micromonas commoda HOM05D006671 ORTHO05D008637 1.2e-44 185.3 429 31.7
C01p50010 Brassica napus HOM05D010519 ORTHO05D027459 1.1e-35 155.6 141 60.3
BolC1t04958H Brassica oleracea HOM05D010519 ORTHO05D027459 1.1e-35 155.6 141 60.3
Hund05690 Selenicereus undatus HOM05D006671 ORTHO05D008637 3.4e-34 150.6 123 60.2
HPP92_002174 Vanilla planifolia HOM05D000872 ORTHO05D007886 6.4e-33 146.4 305 32.5
BcaC09g48416 Brassica carinata HOM05D006671 ORTHO05D027459 1.4e-32 145.2 103 71.8
Actinidia21852 Actinidia chinensis HOM05D006671 ORTHO05D008637 1.0e-30 139.0 120 55.0
Cfa022026 Carpinus fangiana HOM05D002393 ORTHO05D123579 1.6e-28 131.7 489 26.6
FAN05G4676 Fragaria x ananassa HOM05D006671 ORTHO05D008637 2.5e-21 107.8 113 52.2
Lsat_1_v5_gn_2_122021 Lactuca sativa HOM05D006671 ORTHO05D008637 2.5e-16 91.3 123 40.7
TAR628G0982 Trochodendron aralioides HOM05D008167 ORTHO05D010296 1.1e-11 75.9 348 22.4
Pp3c20_15640 Physcomitrium patens HOM05D008167 ORTHO05D010296 4.5e-10 70.5 357 23.8
Lsat_1_v5_gn_2_91241 Lactuca sativa HOM05D006671 ORTHO05D011576 5.9e-10 70.1 70 52.9
EL10Ac1g01257 Beta vulgaris HOM05D008167 ORTHO05D010296 1.7e-09 68.6 359 22.3
AUR62027724 Chenopodium quinoa HOM05D008167 ORTHO05D010296 6.5e-09 66.6 337 22.3
Lsat_1_v5_gn_1_119700 Lactuca sativa HOM05D006671 ORTHO05D011576 6.5e-09 66.6 70 45.7
CSS0027715 Camellia sinensis var. sinensis HOM05D006671 ORTHO05D008637 8.5e-09 66.2 38 73.7
BcaB07g33306 Brassica carinata HOM05D000305 ORTHO05D000065 3.2e-08 64.3 55 56.4
Os06g0222800 Oryza sativa ssp. japonica HOM05D008167 ORTHO05D010296 6.1e-07 60.1 274 23.7
Lsat_1_v5_gn_0_9700 Lactuca sativa HOM05D008167 ORTHO05D010296 7.9e-07 59.7 382 20.7
Manes.02G154800 Manihot esculenta HOM05D008167 ORTHO05D010296 3.9e-06 57.4 343 22.2
Nn1g05299 Nelumbo nucifera HOM05D008167 ORTHO05D010296 3.9e-06 57.4 424 20.8
PSO133G0102 Papaver somniferum HOM05D008167 ORTHO05D010296 3.9e-06 57.4 279 21.1
Potri.002G093800 Populus trichocarpa HOM05D008167 ORTHO05D010296 5.1e-06 57.0 277 23.1
PSO541G2703 Papaver somniferum HOM05D008167 ORTHO05D010296 6.7e-06 56.6 281 21.0
GSVIVG01009002001 Vitis vinifera HOM05D008167 ORTHO05D010296 8.7e-06 56.2 289 22.5


User provided reference genes

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