Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G62310 Arabidopsis lyrata HOM05D002505 ORTHO05D006559 2.0e-257 892.1 524 100.0
AT1G53645 Arabidopsis thaliana HOM05D002505 ORTHO05D006559 6.6e-232 807.4 529 90.4
Carub.0001s4291 Capsella rubella HOM05D002505 ORTHO05D006559 4.2e-210 734.9 533 84.1
CARHR043910 Cardamine hirsuta HOM05D002505 ORTHO05D006559 1.7e-203 713.0 543 79.2
Thhalv10011382m.g Eutrema salsugineum HOM05D002505 ORTHO05D006559 1.4e-165 587.0 556 68.7
Sp1g40180 Schrenkiella parvula HOM05D002505 ORTHO05D006559 8.8e-160 567.8 547 65.6
BraA06t23318Z Brassica rapa HOM05D001023 ORTHO05D006559 1.2e-151 540.8 537 66.1
A06p00890 Brassica napus HOM05D001023 ORTHO05D006559 1.7e-147 526.9 565 64.2
C06p09440 Brassica napus HOM05D001023 ORTHO05D006559 6.3e-142 508.4 555 61.4
BolC6t36013H Brassica oleracea HOM05D001023 ORTHO05D006559 1.4e-141 507.3 540 64.6
BcaC08g43545 Brassica carinata HOM05D002505 ORTHO05D006559 2.4e-141 506.5 540 64.4
BcaB07g33312 Brassica carinata HOM05D002505 ORTHO05D006559 1.5e-138 497.3 544 63.2
BcaB02g10898 Brassica carinata HOM05D002505 ORTHO05D006559 1.6e-137 493.8 528 59.7
Aa31LG10G1650 Aethionema arabicum HOM05D002505 ORTHO05D006559 7.3e-130 468.4 572 58.0
THA.LOC104822601 Tarenaya hassleriana HOM05D002505 ORTHO05D006559 5.1e-99 365.9 544 50.4
BolC6t36693H Brassica oleracea HOM05D002505 ORTHO05D006559 4.2e-93 346.3 349 63.6
Gorai.013G241700 Gossypium raimondii HOM05D002505 ORTHO05D006559 4.9e-86 322.8 543 45.9
TWI59G0446 Tripterygium wilfordii HOM05D002505 ORTHO05D006559 8.4e-86 322.0 533 46.0
Gohir.A13G207000 Gossypium hirsutum HOM05D002505 ORTHO05D006559 2.4e-85 320.5 543 46.0
Gohir.D13G211600 Gossypium hirsutum HOM05D002505 ORTHO05D006559 7.1e-85 318.9 543 45.3
MSTRG.14571 Avicennia marina HOM05D002505 ORTHO05D006559 1.5e-82 311.2 448 48.9
Cpa.g.sc77.87 Carica papaya HOM05D002505 ORTHO05D006559 5.6e-82 309.3 540 43.1
Duzib168G0650 Durio zibethinus HOM05D002505 ORTHO05D006559 3.4e-79 300.1 548 44.2
Peaxi162Scf00225g00129 Petunia axillaris HOM05D002505 ORTHO05D006559 4.5e-79 299.7 375 52.0
MD10G1217100 Malus domestica HOM05D002505 ORTHO05D006559 5.8e-79 299.3 527 44.2
Sopen01g041610 Solanum pennellii HOM05D002505 ORTHO05D006559 8.4e-78 295.4 454 49.6
MD05G1239100 Malus domestica HOM05D002505 ORTHO05D006559 5.5e-77 292.7 457 44.6
arahy.Tifrunner.gnm1.ann1.GJQ7VP Arachis hypogaea HOM05D002505 ORTHO05D006559 2.7e-76 290.4 554 43.9
Potri.015G137000 Populus trichocarpa HOM05D002505 ORTHO05D006559 2.7e-76 290.4 547 42.0
Dinv37391 Davidia involucrata HOM05D002505 ORTHO05D007115 3.5e-76 290.0 456 46.3
CSS0039073 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 4.6e-76 289.7 458 43.4
arahy.Tifrunner.gnm1.ann1.C6HHUS Arachis hypogaea HOM05D002505 ORTHO05D006559 6.0e-76 289.3 554 43.7
Solyc01g098030.4 Solanum lycopersicum HOM05D002505 ORTHO05D006559 7.9e-76 288.9 450 45.3
Lj6g0017559 Lotus japonicus HOM05D002505 ORTHO05D006559 1.0e-75 288.5 571 39.4
PGSC0003DMG400022499 Solanum tuberosum HOM05D002505 ORTHO05D006559 1.0e-75 288.5 454 48.2
Sc18g0006950 Simmondsia chinensis HOM05D002505 ORTHO05D006559 1.3e-75 288.1 471 44.2
Oeu019749.1 Olea europaea HOM05D002505 ORTHO05D006559 2.3e-75 287.3 368 49.5
Nitab4.5_0002840g0110 Nicotiana tabacum HOM05D002505 ORTHO05D006559 3.0e-75 287.0 342 55.3
Prupe.4G127000 Prunus persica HOM05D002505 ORTHO05D006559 5.1e-75 286.2 353 52.7
Migut.H01653 Erythranthe guttata HOM05D002505 ORTHO05D006559 8.7e-75 285.4 334 53.9
arahy.Tifrunner.gnm1.ann1.91B0ED Arachis hypogaea HOM05D002505 ORTHO05D006559 1.1e-74 285.0 472 44.1
Eucgr.D02598 Eucalyptus grandis HOM05D002505 ORTHO05D006559 2.5e-74 283.9 459 44.2
TAR626G1844 Trochodendron aralioides HOM05D002505 ORTHO05D006559 2.2e-73 280.8 456 44.3
CAN.G134.186 Capsicum annuum HOM05D002505 ORTHO05D006559 3.7e-73 280.0 365 51.2
SGA_v2.0_scaffold49G18207 Striga asiatica HOM05D002505 ORTHO05D006559 3.7e-73 280.0 489 42.7
Thecc.09G195000 Theobroma cacao HOM05D002505 ORTHO05D006559 5.3e-72 276.2 326 54.6
Rhsim09G0088500 Rhododendron simsii HOM05D002505 ORTHO05D006559 6.9e-72 275.8 459 43.4
Atru.chr1.1039 Acer truncatum HOM05D002505 ORTHO05D006559 9.0e-72 275.4 192 67.7
MELO3C016182.2 Cucumis melo HOM05D002505 ORTHO05D006559 2.0e-71 274.2 471 43.1
CiPaw.15G113000 Carya illinoinensis HOM05D002505 ORTHO05D006559 5.9e-71 272.7 457 41.6
Hund09330 Selenicereus undatus HOM05D002505 ORTHO05D006559 1.7e-70 271.2 461 44.3
Nn4g25029 Nelumbo nucifera HOM05D002505 ORTHO05D006559 5.0e-70 269.6 459 44.0
Nitab4.5_0002361g0170 Nicotiana tabacum HOM05D002505 ORTHO05D006559 5.0e-70 269.6 337 55.8
A05p18000 Brassica napus HOM05D002505 ORTHO05D006559 1.9e-69 267.7 177 72.9
BraA05t20694Z Brassica rapa HOM05D002505 ORTHO05D006559 1.9e-69 267.7 177 72.9
Atru.chr3.1220 Acer truncatum HOM05D002505 ORTHO05D006559 2.5e-69 267.3 190 65.8
DCAR_009664 Daucus carota HOM05D002505 ORTHO05D006559 5.5e-69 266.2 191 66.5
CSS0016681 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 7.2e-69 265.8 463 41.9
Actinidia12750 Actinidia chinensis HOM05D002505 ORTHO05D006559 9.3e-69 265.4 453 42.6
AUR62011379 Chenopodium quinoa HOM05D002505 ORTHO05D006559 1.2e-68 265.0 540 41.7
Phvul.006G122700 Phaseolus vulgaris HOM05D002505 ORTHO05D006559 2.7e-68 263.8 378 49.2
vmacro00789 Vaccinium macrocarpon HOM05D002505 ORTHO05D006559 4.6e-68 263.1 482 38.6
RcHm_v2.0_Chr5g0023231 Rosa chinensis HOM05D002505 ORTHO05D006559 6.1e-68 262.7 355 48.5
PGR102G1955 Punica granatum HOM05D002505 ORTHO05D006559 7.9e-68 262.3 379 44.6
Glyma.09G030100 Glycine max HOM05D002505 ORTHO05D006559 1.0e-67 261.9 551 40.8
CsaV3_4G007590 Cucumis sativus L. HOM05D002505 ORTHO05D006559 2.3e-67 260.8 478 42.3
Phvul.006G073200 Phaseolus vulgaris HOM05D002505 ORTHO05D006559 2.3e-67 260.8 555 42.2
Sabra15G0148600 Salix brachista HOM05D002505 ORTHO05D006559 2.3e-67 260.8 549 39.9
CANSAT21G0880 Cannabis sativa HOM05D002505 ORTHO05D006559 5.1e-67 259.6 447 43.8
Cc05_g16590 Coffea canephora HOM05D002505 ORTHO05D006559 5.1e-67 259.6 357 48.7
PSO170G3666 Papaver somniferum HOM05D002505 ORTHO05D006559 8.8e-67 258.8 461 45.1
FAN25G1470 Fragaria x ananassa HOM05D002505 ORTHO05D006559 1.9e-66 257.7 278 56.8
Sed0021026 Sechium edule HOM05D002505 ORTHO05D006559 7.4e-66 255.8 544 40.3
FvH4_3g14000 Fragaria vesca HOM05D002505 ORTHO05D006559 1.3e-65 255.0 346 49.4
PSO017G2893 Papaver somniferum HOM05D002505 ORTHO05D006559 1.3e-65 255.0 467 44.3
FAN11G2806 Fragaria x ananassa HOM05D002505 ORTHO05D006559 1.7e-65 254.6 342 49.4
ClCG07G010710 Citrullus lanatus HOM05D002505 ORTHO05D006559 2.2e-65 254.2 539 38.0
C06p15180 Brassica napus HOM05D002505 ORTHO05D006559 2.8e-65 253.8 140 87.9
GSVIVG01031552001 Vitis vinifera HOM05D002505 ORTHO05D006559 2.8e-65 253.8 192 62.5
AUR62016680 Chenopodium quinoa HOM05D002505 ORTHO05D006559 4.8e-65 253.1 360 48.1
FAN21G2970 Fragaria x ananassa HOM05D002505 ORTHO05D006559 1.4e-64 251.5 541 39.9
FAN16G0440 Fragaria x ananassa HOM05D002505 ORTHO05D006559 1.8e-64 251.1 550 39.6
Ah.09g227860 Amaranthus hybridus HOM05D002505 ORTHO05D006559 5.3e-64 249.6 436 40.1
Manes.08G161700 Manihot esculenta HOM05D002505 ORTHO05D006559 6.9e-64 249.2 455 43.7
HPP92_002279 Vanilla planifolia HOM05D002505 ORTHO05D006559 1.2e-63 248.4 371 45.3
EL10Ac5g10510 Beta vulgaris HOM05D002505 ORTHO05D006559 2.0e-63 247.7 487 37.2
AUR62002958 Chenopodium quinoa HOM05D002505 ORTHO05D006559 3.4e-63 246.9 428 41.1
Ca_18602_v3 Cicer arietinum L. HOM05D002505 ORTHO05D006559 5.9e-63 246.1 557 39.0
VMungo1309G1878 Vigna mungo HOM05D002505 ORTHO05D006559 7.7e-63 245.7 370 46.8
AUR62007763 Chenopodium quinoa HOM05D002505 ORTHO05D006559 2.9e-62 243.8 420 41.2
ECA246G4077 Erigeron canadensis HOM05D002505 ORTHO05D006559 3.8e-62 243.4 494 39.5
HanXRQChr05g0159341 Helianthus annuus HOM05D002505 ORTHO05D006559 5.0e-62 243.0 295 46.8
SHI32899 Sapria himalayana HOM05D002505 ORTHO05D006559 5.0e-62 243.0 305 49.5
Medtr8g078230 Medicago truncatula HOM05D002505 ORTHO05D006559 8.5e-62 242.3 397 40.1
VMungo0540G1128 Vigna mungo HOM05D002505 ORTHO05D006559 8.5e-62 242.3 382 46.1
Os06g0664400 Oryza sativa ssp. japonica HOM05D002505 ORTHO05D006559 1.1e-61 241.9 314 55.1
Lsat_1_v5_gn_5_3041 Lactuca sativa HOM05D002505 ORTHO05D006559 1.4e-59 235.0 534 39.5
Zm00001eb060430 Zea mays HOM05D002505 ORTHO05D006559 1.8e-59 234.6 512 41.8
unitig_21.g20249 Utricularia gibba HOM05D002505 ORTHO05D006559 3.9e-59 233.4 206 54.4
ATR0057G033 Amborella trichopoda HOM05D002505 ORTHO05D006559 8.8e-59 232.3 426 39.7
Rhsim06G0244600 Rhododendron simsii HOM05D002505 ORTHO05D006559 1.1e-58 231.9 446 40.8
BcaC08g44112 Brassica carinata HOM05D002505 ORTHO05D006559 1.5e-58 231.5 502 36.9
Aqoxy1G00117 Aquilegia oxysepala HOM05D002505 ORTHO05D006559 9.7e-58 228.8 474 41.6
Lalb_Chr20g0120281 Lupinus albus HOM05D002505 ORTHO05D006559 1.7e-57 228.0 523 38.6
CDE05G0972 Ceratophyllum demersum HOM05D002505 ORTHO05D006559 2.2e-57 227.6 447 38.3
Lj1C206G15 Lonicera japonica HOM05D002505 ORTHO05D006559 1.8e-56 224.6 171 62.0
Ciclev10019766m.g Citrus clementina HOM05D002505 ORTHO05D006559 1.0e-54 218.8 247 56.7
CDE02G1608 Ceratophyllum demersum HOM05D002505 ORTHO05D006559 1.1e-53 215.3 339 44.8
Psat4g091000 Pisum sativum HOM05D002505 ORTHO05D006559 7.2e-53 212.6 423 39.7
Thhalv10012156m.g Eutrema salsugineum HOM05D002505 ORTHO05D006559 8.2e-49 199.1 107 89.7
Dinv17234 Davidia involucrata HOM05D002505 ORTHO05D006559 3.8e-38 163.7 367 39.2
QL04p094522 Quercus lobata HOM05D002505 ORTHO05D000632 5.0e-30 136.7 364 36.8
Haze_18498 Corylus avellana HOM05D002505 ORTHO05D006559 3.6e-28 130.6 289 40.8
Dinv29488 Davidia involucrata HOM05D002505 ORTHO05D006559 6.1e-28 129.8 90 68.9
Glyma.15G135900 Glycine max HOM05D002505 ORTHO05D006559 8.9e-27 125.9 123 50.4
Ah.07g202770 Amaranthus hybridus HOM05D002505 ORTHO05D006559 1.5e-26 125.2 91 63.7
Pp3c12_26140 Physcomitrium patens HOM05D002505 ORTHO05D006559 7.0e-24 116.3 170 37.1
AagrBONN_evm.TU.Sc2ySwM_228.276 Anthoceros agrestis HOM05D002505 ORTHO05D006559 2.7e-23 114.4 142 36.6
Ah.13g066500 Amaranthus hybridus HOM05D002505 ORTHO05D006559 5.9e-23 113.2 336 32.7
Mapoly0043s0004 Marchantia polymorpha HOM05D002505 ORTHO05D006559 7.8e-23 112.8 317 28.4
BcaC08g44106 Brassica carinata HOM05D002505 ORTHO05D006559 6.1e-20 103.2 115 56.5
Actinidia26206 Actinidia chinensis HOM05D002505 ORTHO05D006559 3.2e-16 90.9 64 64.1
CSS0015020 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 4.1e-16 90.5 323 32.8
Haze_18499 Corylus avellana HOM05D002505 ORTHO05D006559 5.4e-16 90.1 62 69.4
QL04p094482 Quercus lobata HOM05D000280 ORTHO05D006559 3.5e-15 87.4 69 62.3
RcHm_v2.0_Chr5g0023281 Rosa chinensis HOM05D002505 ORTHO05D006559 1.3e-14 85.5 62 64.5
SEGI_13390 Sequoiadendron giganteum HOM05D002505 ORTHO05D006559 1.5e-13 82.0 82 47.6
COL.COLO4_21461 Corchorus olitorius HOM05D002505 ORTHO05D006559 1.2e-12 79.0 310 32.6
Ah.13g066490 Amaranthus hybridus HOM05D002505 ORTHO05D006559 6.2e-12 76.6 63 58.7
BcaB05g24931 Brassica carinata HOM05D002505 ORTHO05D006559 3.2e-08 64.3 38 71.1
BcaC08g46840 Brassica carinata HOM05D002505 ORTHO05D006559 3.2e-08 64.3 38 71.1
CBR_g41404 Chara braunii HOM05D002505 ORTHO05D006559 1.3e-06 58.9 72 36.1
AL1G21270 Arabidopsis lyrata HOM05D002505 ORTHO05D006559 2.3e-06 58.2 34 91.2
AagrBONN_evm.TU.Sc2ySwM_117.3603 Anthoceros agrestis HOM05D002505 ORTHO05D006559 6.6e-06 56.6 70 31.4


User provided reference genes

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