Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G62010 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 4.2e-89 331.3 158 100.0
CARHR043670 Cardamine hirsuta HOM05D004150 ORTHO05D005087 3.0e-63 245.4 130 88.5
Sp1g39990 Schrenkiella parvula HOM05D004150 ORTHO05D005087 1.1e-60 236.9 133 85.7
AT1G53450 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 7.7e-59 230.7 130 88.5
Thhalv10011465m.g Eutrema salsugineum HOM05D004150 ORTHO05D005087 3.8e-58 228.4 132 81.8
Aa31LG8G2040 Aethionema arabicum HOM05D004150 ORTHO05D005087 2.7e-56 222.2 130 81.5
CARHR089770 Cardamine hirsuta HOM05D004150 ORTHO05D005087 3.3e-54 215.3 136 78.7
THA.LOC104815577 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 3.3e-54 215.3 124 82.3
AL3G27140 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 5.7e-54 214.5 152 72.4
Carub.0001s4264 Capsella rubella HOM05D004150 ORTHO05D005087 1.7e-53 213.0 130 81.5
THA.LOC104810428 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 1.7e-53 213.0 124 81.5
AT3G14830 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 1.2e-51 206.8 137 76.6
Carub.0003s1449 Capsella rubella HOM05D004150 ORTHO05D005087 1.1e-49 200.3 140 75.0
BcaB07g33329 Brassica carinata HOM05D004150 ORTHO05D005087 3.0e-47 192.2 130 73.8
BolC5t33929H Brassica oleracea HOM05D004150 ORTHO05D005087 2.0e-46 189.5 119 78.2
BraA05t22282Z Brassica rapa HOM05D004150 ORTHO05D005087 7.5e-46 187.6 118 78.0
BraA06t23329Z Brassica rapa HOM05D004150 ORTHO05D005087 1.7e-45 186.4 124 77.4
C05p52450 Brassica napus HOM05D004150 ORTHO05D005087 2.8e-45 185.7 118 78.0
A06p01010 Brassica napus HOM05D004150 ORTHO05D005087 3.7e-45 185.3 124 76.6
BcaC08g43529 Brassica carinata HOM05D004150 ORTHO05D005087 4.8e-45 184.9 124 76.6
BolC6t35999H Brassica oleracea HOM05D004150 ORTHO05D005087 4.8e-45 184.9 124 76.6
BcaC05g29034 Brassica carinata HOM05D004150 ORTHO05D005087 8.3e-45 184.1 118 78.0
Haze_09266 Corylus avellana HOM05D004150 ORTHO05D005087 8.3e-45 184.1 140 67.9
Cfa019528 Carpinus fangiana HOM05D004150 ORTHO05D005087 1.8e-44 183.0 139 67.6
A05p34660 Brassica napus HOM05D004150 ORTHO05D005087 5.4e-44 181.4 119 74.8
Cc05_g10890 Coffea canephora HOM05D004150 ORTHO05D005087 1.6e-43 179.9 127 70.9
RcHm_v2.0_Chr5g0030011 Rosa chinensis HOM05D004150 ORTHO05D005087 2.7e-43 179.1 132 71.2
MELO3C025660.2 Cucumis melo HOM05D004150 ORTHO05D005087 5.9e-43 177.9 161 60.2
ClCG11G017260 Citrullus lanatus HOM05D004150 ORTHO05D005087 1.0e-42 177.2 127 70.9
FAN25G1025 Fragaria x ananassa HOM05D004150 ORTHO05D005087 1.3e-42 176.8 138 65.2
CANSAT56G2087 Cannabis sativa HOM05D004150 ORTHO05D005087 1.7e-42 176.4 140 65.0
FAN21G0088 Fragaria x ananassa HOM05D004150 ORTHO05D005087 1.7e-42 176.4 138 65.2
MD11G1267300 Malus domestica HOM05D004150 ORTHO05D005087 2.2e-42 176.0 155 61.3
Hma1.2p1_1650F.1_g295710 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 3.8e-42 175.3 160 58.8
Hma1.2p1_2701F.1_g327060 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 3.8e-42 175.3 160 58.8
FvH4_3g17970 Fragaria vesca HOM05D004150 ORTHO05D005087 5.0e-42 174.9 139 65.5
FAN11G2611 Fragaria x ananassa HOM05D004150 ORTHO05D005087 5.0e-42 174.9 139 65.5
MD03G1246300 Malus domestica HOM05D004150 ORTHO05D005087 5.0e-42 174.9 120 75.8
CsaV3_4G032910 Cucumis sativus L. HOM05D004150 ORTHO05D005087 6.5e-42 174.5 127 70.1
FAN16G0401 Fragaria x ananassa HOM05D004150 ORTHO05D005087 1.1e-41 173.7 138 63.8
C06p09220 Brassica napus HOM05D004150 ORTHO05D005087 1.5e-41 173.3 124 73.4
Prupe.4G158300 Prunus persica HOM05D004150 ORTHO05D005087 1.5e-41 173.3 130 70.8
Manes.15G097400 Manihot esculenta HOM05D004150 ORTHO05D005087 1.9e-41 172.9 131 67.2
Dinv15009 Davidia involucrata HOM05D004150 ORTHO05D005087 2.5e-41 172.6 127 69.3
Nn3g21055 Nelumbo nucifera HOM05D004150 ORTHO05D005087 3.2e-41 172.2 150 60.0
Sed0003063 Sechium edule HOM05D004150 ORTHO05D005087 3.2e-41 172.2 138 65.2
PSO170G1443 Papaver somniferum HOM05D004150 ORTHO05D005087 7.2e-41 171.0 142 62.7
BcaB06g25355 Brassica carinata HOM05D004150 ORTHO05D005087 1.2e-40 170.2 118 72.9
Actinidia21439 Actinidia chinensis HOM05D004150 ORTHO05D005087 2.7e-40 169.1 132 65.2
Lsat_1_v5_gn_9_100501 Lactuca sativa HOM05D004150 ORTHO05D005087 3.6e-40 168.7 130 67.7
Atru.chr2.2029 Acer truncatum HOM05D004150 ORTHO05D005087 4.7e-40 168.3 120 71.7
Atru.chr2.2041 Acer truncatum HOM05D004150 ORTHO05D005087 4.7e-40 168.3 120 71.7
TAR629G2423 Trochodendron aralioides HOM05D004150 ORTHO05D005087 6.1e-40 167.9 131 64.9
PSO782G0021 Papaver somniferum HOM05D004150 ORTHO05D005087 8.0e-40 167.5 142 62.0
SalBow7G0391 Salvia bowleyana HOM05D004150 ORTHO05D005087 1.4e-39 166.8 123 68.3
Manes.03G091700 Manihot esculenta HOM05D004150 ORTHO05D005087 1.8e-39 166.4 135 63.0
MBI06_g16571_MAGBIO Magnolia biondii HOM05D004150 ORTHO05D005087 3.0e-39 165.6 131 63.4
GSVIVG01014152001 Vitis vinifera HOM05D004150 ORTHO05D005087 3.0e-39 165.6 126 67.5
CSS0042666 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 6.8e-39 164.5 140 63.6
TAR627G0919 Trochodendron aralioides HOM05D004150 ORTHO05D005087 6.8e-39 164.5 123 67.5
Potri.003G026500 Populus trichocarpa HOM05D004150 ORTHO05D005087 1.2e-38 163.7 131 64.1
CSS0001873 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 2.6e-38 162.5 164 55.5
Glyma.12G231700 Glycine max HOM05D004150 ORTHO05D005087 3.4e-38 162.2 121 68.6
Duzib213G1096 Durio zibethinus HOM05D004150 ORTHO05D005087 4.4e-38 161.8 143 59.4
Potri.011G106600 Populus trichocarpa HOM05D004150 ORTHO05D005087 4.4e-38 161.8 135 63.0
VMungo1080G1533 Vigna mungo HOM05D004150 ORTHO05D005087 4.4e-38 161.8 121 69.4
MSTRG.14976 Avicennia marina HOM05D004150 ORTHO05D005087 5.7e-38 161.4 119 68.9
Phvul.005G079200 Phaseolus vulgaris HOM05D004150 ORTHO05D005087 5.7e-38 161.4 121 68.6
Sabra16G0254300 Salix brachista HOM05D004150 ORTHO05D005087 5.7e-38 161.4 131 63.4
Oeu010027.3 Olea europaea HOM05D004150 ORTHO05D005087 7.5e-38 161.0 128 64.1
SGA_v2.0_scaffold130G34274 Striga asiatica HOM05D004150 ORTHO05D005087 9.8e-38 160.6 127 64.6
Gohir.A02G079101 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.3e-37 160.2 143 58.7
Potri.001G386700 Populus trichocarpa HOM05D004150 ORTHO05D005087 1.3e-37 160.2 128 64.1
Gorai.013G174200 Gossypium raimondii HOM05D004150 ORTHO05D005087 1.7e-37 159.8 143 58.0
Glyma.13G266400 Glycine max HOM05D004150 ORTHO05D005087 2.2e-37 159.5 121 67.8
Oeu058459.1 Olea europaea HOM05D004150 ORTHO05D005087 2.2e-37 159.5 123 65.9
Gohir.D13G154200 Gossypium hirsutum HOM05D004150 ORTHO05D005087 2.8e-37 159.1 143 58.0
Ah.04g164080 Amaranthus hybridus HOM05D004150 ORTHO05D005087 3.7e-37 158.7 121 67.8
Thecc.07G119700 Theobroma cacao HOM05D004150 ORTHO05D005087 3.7e-37 158.7 152 55.3
Migut.H02018 Erythranthe guttata HOM05D004150 ORTHO05D005087 4.9e-37 158.3 123 68.3
Gohir.A13G149900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 6.3e-37 157.9 143 58.0
Sabra11G0094900 Salix brachista HOM05D004150 ORTHO05D005087 8.3e-37 157.5 127 65.4
TWI38G0344 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 8.3e-37 157.5 118 66.9
Aqoxy1G01964 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 1.1e-36 157.1 118 61.9
CiPaw.11G157600 Carya illinoinensis HOM05D004150 ORTHO05D005087 2.4e-36 156.0 119 66.4
Gorai.002G053300 Gossypium raimondii HOM05D004150 ORTHO05D005087 2.4e-36 156.0 143 56.6
PGR083G0816 Punica granatum HOM05D004150 ORTHO05D005087 2.4e-36 156.0 133 60.2
Gohir.A01G052900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 3.1e-36 155.6 143 56.6
COL.COLO4_17523 Corchorus olitorius HOM05D004150 ORTHO05D005087 7.0e-36 154.5 155 54.2
TWI39G0561 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 7.0e-36 154.5 118 65.3
Psat5g234480 Pisum sativum HOM05D004150 ORTHO05D005087 9.2e-36 154.1 120 68.3
Gohir.D01G042500 Gossypium hirsutum HOM05D004150 ORTHO05D005087 2.7e-35 152.5 143 55.9
HanXRQChr17g0556791 Helianthus annuus HOM05D004150 ORTHO05D005087 2.7e-35 152.5 117 63.2
HanXRQChr10g0305531 Helianthus annuus HOM05D004150 ORTHO05D005087 3.5e-35 152.1 133 60.9
Sc03g0010640 Simmondsia chinensis HOM05D004150 ORTHO05D005087 3.5e-35 152.1 129 62.0
Ca_03941_v3 Cicer arietinum L. HOM05D004150 ORTHO05D005087 5.9e-35 151.4 120 66.7
CDE06G0863 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 7.7e-35 151.0 140 57.1
Nn6g34456 Nelumbo nucifera HOM05D004150 ORTHO05D005087 1.0e-34 150.6 138 58.7
Ciclev10019972m.g Citrus clementina HOM05D004150 ORTHO05D005087 1.7e-34 149.8 124 65.3
EL10Ac4g08396 Beta vulgaris HOM05D004150 ORTHO05D005087 3.8e-34 148.7 123 61.8
Lj1A826G61 Lonicera japonica HOM05D004150 ORTHO05D005087 3.8e-34 148.7 134 59.7
Hund10457 Selenicereus undatus HOM05D004150 ORTHO05D005087 3.8e-34 148.7 128 61.7
Eucgr.F01300 Eucalyptus grandis HOM05D004150 ORTHO05D005087 8.6e-34 147.5 128 62.5
QL08p025867 Quercus lobata HOM05D004150 ORTHO05D005087 1.1e-33 147.1 131 59.5
CDE02G2021 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 1.5e-33 146.7 140 55.7
AUR62019617 Chenopodium quinoa HOM05D004150 ORTHO05D005087 1.9e-33 146.4 120 62.5
AUR62039606 Chenopodium quinoa HOM05D004150 ORTHO05D005087 5.6e-33 144.8 120 62.5
Medtr2g075340 Medicago truncatula HOM05D004150 ORTHO05D005087 1.2e-32 143.7 116 62.9
Peaxi162Scf00111g01477 Petunia axillaris HOM05D004150 ORTHO05D005087 4.7e-32 141.7 182 47.8
Nitab4.5_0000347g0180 Nicotiana tabacum HOM05D004150 ORTHO05D005087 6.1e-32 141.4 181 48.1
Lj3g0004524 Lotus japonicus HOM05D004150 ORTHO05D005087 8.0e-32 141.0 123 65.9
vmacro09408 Vaccinium macrocarpon HOM05D004150 ORTHO05D005087 1.4e-31 140.2 137 55.5
Dinv18386 Davidia involucrata HOM05D004150 ORTHO05D005087 1.8e-31 139.8 119 61.3
TPR.G13030 Trifolium pratense HOM05D004150 ORTHO05D005087 1.8e-31 139.8 120 61.7
CAN.G375.32 Capsicum annuum HOM05D004150 ORTHO05D005087 2.3e-31 139.4 166 48.8
Lalb_Chr25g0285681 Lupinus albus HOM05D004150 ORTHO05D005087 6.8e-31 137.9 113 66.4
Lalb_Chr19g0133751 Lupinus albus HOM05D004150 ORTHO05D005087 8.9e-31 137.5 119 59.7
Rhsim04G0036400 Rhododendron simsii HOM05D004150 ORTHO05D005087 8.9e-31 137.5 130 58.5
Solyc07g062250.3 Solanum lycopersicum HOM05D004150 ORTHO05D005087 8.9e-31 137.5 166 48.8
Sopen07g030520 Solanum pennellii HOM05D004150 ORTHO05D005087 8.9e-31 137.5 166 48.8
Rhsim04G0035400 Rhododendron simsii HOM05D004150 ORTHO05D005087 1.2e-30 137.1 130 58.5
PGSC0003DMG400007094 Solanum tuberosum HOM05D004150 ORTHO05D005087 1.5e-30 136.7 166 48.8
EL10Ac9g22809 Beta vulgaris HOM05D004150 ORTHO05D005087 9.8e-30 134.0 121 61.2
VMungo1309G1261 Vigna mungo HOM05D004150 ORTHO05D005087 2.2e-29 132.9 108 64.8
Lalb_Chr03g0031251 Lupinus albus HOM05D004150 ORTHO05D005087 3.7e-29 132.1 116 57.8
Actinidia12595 Actinidia chinensis HOM05D004150 ORTHO05D005087 5.4e-28 128.3 199 41.7
Actinidia33318 Actinidia chinensis HOM05D004150 ORTHO05D005087 5.9e-27 124.8 174 44.3
ECA234G0958 Erigeron canadensis HOM05D004150 ORTHO05D005087 1.0e-26 124.0 143 49.7
ATR0127G006 Amborella trichopoda HOM05D004150 ORTHO05D005087 5.0e-26 121.7 122 54.9
Aqoxy1G01962 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 6.2e-24 114.8 113 52.2
Zm00001eb361900 Zea mays HOM05D004150 ORTHO05D005087 2.0e-22 109.8 120 47.5
unitig_21.g20061 Utricularia gibba HOM05D004150 ORTHO05D005087 5.8e-22 108.2 152 46.1
Os01g0729900 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 7.5e-22 107.8 116 44.8
BolC5t30531H Brassica oleracea HOM05D004150 ORTHO05D032065 8.6e-18 94.4 85 58.8
Zm00001eb154220 Zea mays HOM05D004150 ORTHO05D005087 1.5e-17 93.6 114 44.7
Haze_11864 Corylus avellana HOM05D004150 ORTHO05D005087 2.1e-16 89.7 67 67.2
CiPaw.12G111300 Carya illinoinensis HOM05D004150 ORTHO05D005087 4.7e-16 88.6 78 60.3
Os05g0530300 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 3.2e-12 75.9 120 36.7
Zm00001eb293260 Zea mays HOM05D004150 ORTHO05D005087 3.2e-12 75.9 120 43.3
VMungo0251G3124 Vigna mungo HOM05D004150 ORTHO05D005087 5.4e-12 75.1 66 60.6
HPP92_005189 Vanilla planifolia HOM05D004150 ORTHO05D005087 2.0e-06 56.6 45 53.3
DCAR_013267 Daucus carota HOM05D004150 ORTHO05D005087 3.4e-06 55.8 27 92.6


User provided reference genes

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