Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G61970 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1479.5 778 100.0
AL1G65160 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1368.2 778 92.5
AL6G42690 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1340.1 778 90.7
AL4G24140 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1317.0 771 90.4
AL5G12240 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1313.9 778 89.5
AL1G47450 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1305.0 778 88.6
AL9U10230 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1298.9 778 88.7
AL8G11870 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1287.3 771 86.6
AL8G45410 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1273.1 778 87.1
AL3G37710 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1271.9 778 87.5
AL2G23360 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1269.6 778 87.7
AL8G20450 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1248.0 772 86.1
AL1G57330 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1232.6 778 83.7
AL3G38160 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1222.6 778 81.9
AL2G18400 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1205.3 784 81.6
AL5G23160 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1188.7 772 82.8
AL6G47370 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1119.4 778 76.7
AL77U10020 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 1.1e-311 1072.8 778 76.7
AL5G19630 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 5.1e-305 1050.8 781 73.6
AL8G33480 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 1.2e-261 906.7 958 57.8
AT5G32590 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 3.2e-230 802.4 763 58.8
AL6G45550 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 4.6e-189 665.6 435 82.5
AL8G10170 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 5.9e-168 595.5 451 71.2
AL4G14310 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 5.1e-164 582.4 325 87.7
AT3G43148 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 2.8e-162 576.6 750 49.6
AT3G30230 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 2.6e-139 500.4 733 45.0
AT2G11010 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 9.4e-134 481.9 671 45.6
AL8G10150 Arabidopsis lyrata HOM05D000327 ORTHO05D000218 1.9e-102 377.9 251 82.9
AT4G06688 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 3.4e-91 340.5 606 40.8
AT5G35604 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 1.1e-76 292.4 329 53.2
AT1G36100 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 3.7e-61 240.7 162 75.9
AT3G32190 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 3.8e-58 230.7 256 53.1
AL4G17450 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 1.9e-49 201.8 291 42.3
AT5G33806 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 4.1e-44 184.1 239 46.0
CARHR115630 Cardamine hirsuta HOM05D008458 ORTHO05D010628 5.9e-43 180.3 232 38.4
AT3G33393 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 1.5e-35 155.6 117 64.1
Carub.0007s3731 Capsella rubella HOM05D009492 ORTHO05D011693 1.4e-31 142.5 718 28.1
CARHR184520 Cardamine hirsuta HOM05D008458 ORTHO05D010628 2.3e-31 141.7 188 38.3
Carub.0008s0728 Capsella rubella HOM05D009492 ORTHO05D011693 6.7e-31 140.2 705 26.0
Carub.0007s3611 Capsella rubella HOM05D009492 ORTHO05D011693 1.7e-29 135.6 691 24.5
AT3G32150 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 4.8e-29 134.0 214 44.4
CARHR174650 Cardamine hirsuta HOM05D008458 ORTHO05D010628 6.3e-29 133.7 143 43.4
Carub.0002s0916 Capsella rubella HOM05D009492 ORTHO05D011693 7.0e-28 130.2 663 26.7
AT3G33293 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 2.6e-27 128.3 134 56.0
CARHR053560 Cardamine hirsuta HOM05D008458 ORTHO05D010628 1.7e-26 125.6 153 43.8
Carub.0005s0956 Capsella rubella HOM05D009492 ORTHO05D011693 7.2e-25 120.2 192 35.4
CARHR035710 Cardamine hirsuta HOM05D008458 ORTHO05D010628 7.2e-25 120.2 174 35.1
Carub.0003s2904 Capsella rubella HOM05D006121 ORTHO05D009559 1.2e-24 119.4 676 24.6
Carub.0006s2644 Capsella rubella HOM05D009492 ORTHO05D011693 4.7e-24 117.5 236 35.2
Carub.0002s1048 Capsella rubella HOM05D009492 ORTHO05D011693 6.1e-24 117.1 218 33.0
CARHR118560 Cardamine hirsuta HOM05D008458 ORTHO05D010628 1.8e-23 115.5 122 49.2
AT3G32200 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 6.8e-23 113.6 132 54.5
BcaC07g37147 Brassica carinata HOM05D006121 ORTHO05D009559 2.6e-22 111.7 208 30.8
BcaC04g23210 Brassica carinata HOM05D006121 ORTHO05D009559 4.4e-22 110.9 213 35.2
BcaC08g42951 Brassica carinata HOM05D006121 ORTHO05D009559 4.4e-22 110.9 205 32.2
BcaC01g02132 Brassica carinata HOM05D006121 ORTHO05D009559 5.7e-22 110.5 208 30.8
BcaC05g27675 Brassica carinata HOM05D006121 ORTHO05D009559 1.3e-21 109.4 204 30.4
AL2G23320 Arabidopsis lyrata HOM05D009492 ORTHO05D011693 1.7e-21 109.0 700 22.6
AT4G08097 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 3.7e-21 107.8 170 44.1
AT4G03830 Arabidopsis thaliana HOM05D009492 ORTHO05D011693 2.4e-20 105.1 404 26.7
AL1G50390 Arabidopsis lyrata HOM05D009492 ORTHO05D011693 3.1e-20 104.8 716 24.0
BcaC09g49745 Brassica carinata HOM05D006121 ORTHO05D009559 3.1e-20 104.8 174 33.9
BcaC03g16521 Brassica carinata HOM05D006121 ORTHO05D009559 5.3e-20 104.0 182 33.5
BcaC03g15130 Brassica carinata HOM05D006121 ORTHO05D009559 1.2e-19 102.8 228 30.7
Carub.0002s0942 Capsella rubella HOM05D009492 ORTHO05D011693 1.6e-19 102.4 152 38.2
CARHR105800 Cardamine hirsuta HOM05D008458 ORTHO05D010628 2.2e-18 98.6 122 40.2
Carub.0003s2742 Capsella rubella HOM05D009492 ORTHO05D011693 3.8e-18 97.8 175 32.6
Carub.0001s3424 Capsella rubella HOM05D009492 ORTHO05D011693 8.5e-18 96.7 397 28.0
AT1G51172 Arabidopsis thaliana HOM05D009492 ORTHO05D011693 1.1e-17 96.3 755 22.3
BcaC04g21502 Brassica carinata HOM05D006121 ORTHO05D009559 1.5e-17 95.9 174 32.2
BcaC09g49729 Brassica carinata HOM05D006121 ORTHO05D009559 2.5e-17 95.1 130 37.7
Carub.0002s0975 Capsella rubella HOM05D009492 ORTHO05D011693 4.2e-17 94.4 141 35.5
AT2G15420 Arabidopsis thaliana HOM05D010629 ORTHO05D005680 7.2e-17 93.6 182 32.4
BcaC01g06835 Brassica carinata HOM05D006121 ORTHO05D009559 9.4e-17 93.2 160 32.5
BcaC09g49299 Brassica carinata HOM05D006121 ORTHO05D009559 1.6e-16 92.4 160 31.9
Carub.0004s1788 Capsella rubella HOM05D009492 ORTHO05D011693 2.7e-16 91.7 444 28.6
BcaC01g02238 Brassica carinata HOM05D006121 ORTHO05D009559 1.0e-15 89.7 245 29.4
Carub.0004s0672 Capsella rubella HOM05D009492 ORTHO05D011693 1.0e-15 89.7 681 25.3
CARHR289250 Cardamine hirsuta HOM05D020629 ORTHO05D022218 1.0e-15 89.7 398 27.6
CARHR217200 Cardamine hirsuta HOM05D020629 ORTHO05D022218 1.4e-15 89.4 348 27.9
BcaC07g37897 Brassica carinata HOM05D006121 ORTHO05D009559 2.3e-15 88.6 208 29.3
BcaC02g11248 Brassica carinata HOM05D006121 ORTHO05D009559 3.0e-15 88.2 157 29.9
Carub.0007s2123 Capsella rubella HOM05D010629 ORTHO05D005680 6.8e-15 87.0 207 30.9
BcaC03g16227 Brassica carinata HOM05D006121 ORTHO05D009559 1.2e-14 86.3 242 28.1
Carub.0002s1244 Capsella rubella HOM05D010629 ORTHO05D005680 1.2e-14 86.3 207 30.4
Carub.0008s1221 Capsella rubella HOM05D016834 ORTHO05D016863 1.2e-14 86.3 255 27.1
Carub.0006s0276 Capsella rubella HOM05D010629 ORTHO05D005680 1.5e-14 85.9 207 30.4
Carub.0007s3212 Capsella rubella HOM05D009492 ORTHO05D011693 3.4e-14 84.7 356 28.7
AL1G53160 Arabidopsis lyrata HOM05D011598 ORTHO05D013181 4.4e-14 84.3 325 24.3
AL7G45790 Arabidopsis lyrata HOM05D011598 ORTHO05D013181 4.4e-14 84.3 209 26.3
Carub.0353s0001 Capsella rubella HOM05D010629 ORTHO05D005680 4.4e-14 84.3 194 30.9
CARHR181090 Cardamine hirsuta HOM05D008458 ORTHO05D010628 4.4e-14 84.3 90 45.6
AT1G46696 Arabidopsis thaliana HOM05D009492 ORTHO05D011693 1.3e-13 82.8 190 30.0
Carub.0003s2886 Capsella rubella HOM05D016834 ORTHO05D016863 1.3e-13 82.8 285 27.0
Carub.0073s0002 Capsella rubella HOM05D016834 ORTHO05D016863 2.8e-13 81.6 222 27.0
BcaC03g17371 Brassica carinata HOM05D006121 ORTHO05D009559 6.3e-13 80.5 161 31.7
AL3G43600 Arabidopsis lyrata HOM05D010629 ORTHO05D005680 8.3e-13 80.1 174 28.2
AT1G20400 Arabidopsis thaliana HOM05D011598 ORTHO05D013181 3.1e-12 78.2 360 26.1
BcaC01g05819 Brassica carinata HOM05D006121 ORTHO05D009559 4.1e-12 77.8 332 26.5
BcaC05g27433 Brassica carinata HOM05D006121 ORTHO05D009559 4.1e-12 77.8 216 29.6
Carub.0008s0719 Capsella rubella HOM05D009492 ORTHO05D011693 9.1e-12 76.6 173 29.5
CARHR153510 Cardamine hirsuta HOM05D008458 ORTHO05D010628 2.7e-11 75.1 66 50.0
CARHR034160 Cardamine hirsuta HOM05D020629 ORTHO05D022218 3.5e-11 74.7 201 27.9
Carub.0003s2394 Capsella rubella HOM05D016834 ORTHO05D016863 5.9e-11 73.9 596 22.8
CARHR150680 Cardamine hirsuta HOM05D008458 ORTHO05D010628 5.9e-11 73.9 63 57.1
Carub.0006s2612 Capsella rubella HOM05D016834 ORTHO05D016863 7.7e-11 73.6 200 27.5
BolC8t48644H Brassica oleracea HOM05D002078 ORTHO05D005680 1.3e-10 72.8 210 28.1
Carub.0108s0001 Capsella rubella HOM05D016834 ORTHO05D016863 1.7e-10 72.4 604 22.4
BcaC08g43200 Brassica carinata HOM05D002078 ORTHO05D005680 2.3e-10 72.0 144 33.3
Carub.0009s0003 Capsella rubella HOM05D016834 ORTHO05D016863 2.3e-10 72.0 258 26.0
Carub.0002s1012 Capsella rubella HOM05D010629 ORTHO05D005680 3.8e-10 71.2 196 29.6
CARHR183560 Cardamine hirsuta HOM05D020629 ORTHO05D022218 3.8e-10 71.2 269 27.1
Carub.0003s2807 Capsella rubella HOM05D010629 ORTHO05D005680 5.0e-10 70.9 167 25.7
AL3G49830 Arabidopsis lyrata HOM05D011598 ORTHO05D013181 6.6e-10 70.5 171 26.3
Carub.0004s1088 Capsella rubella HOM05D010629 ORTHO05D005680 8.6e-10 70.1 145 32.4
Carub.0005s0837 Capsella rubella HOM05D010629 ORTHO05D005680 1.1e-09 69.7 200 27.5
CSS0040956 Camellia sinensis var. sinensis HOM05D035337 ORTHO05D000116 1.9e-09 68.9 193 28.5
Carub.0003s2830 Capsella rubella HOM05D009492 ORTHO05D011693 1.9e-09 68.9 357 24.4
BcaC02g11611 Brassica carinata HOM05D002078 ORTHO05D005680 2.5e-09 68.6 221 26.2
BcaC03g16371 Brassica carinata HOM05D006121 ORTHO05D009559 2.5e-09 68.6 177 29.4
BcaB07g33910 Brassica carinata HOM05D002078 ORTHO05D005680 3.3e-09 68.2 123 35.0
BcaC03g17686 Brassica carinata HOM05D002078 ORTHO05D005680 3.3e-09 68.2 123 31.7
Carub.0072s0001 Capsella rubella HOM05D010629 ORTHO05D005680 4.2e-09 67.8 167 25.1
BcaC02g09767 Brassica carinata HOM05D006121 ORTHO05D009559 5.5e-09 67.4 193 27.5
BcaC02g10377 Brassica carinata HOM05D002078 ORTHO05D005680 5.5e-09 67.4 173 29.5
BcaC07g37903 Brassica carinata HOM05D006121 ORTHO05D009559 5.5e-09 67.4 138 32.6
AL9U10150 Arabidopsis lyrata HOM05D011598 ORTHO05D013181 7.2e-09 67.0 171 25.7
AL3G15920 Arabidopsis lyrata HOM05D011598 ORTHO05D013181 9.5e-09 66.6 787 21.1
BolC3t20163H Brassica oleracea HOM05D006121 ORTHO05D009559 1.6e-08 65.9 81 38.3
Sp7g11540 Schrenkiella parvula HOM05D010529 ORTHO05D012528 1.6e-08 65.9 266 27.1
Carub.0007s3050 Capsella rubella HOM05D010629 ORTHO05D005680 2.1e-08 65.5 242 23.6
BcaC01g04584 Brassica carinata HOM05D002078 ORTHO05D005680 2.8e-08 65.1 149 30.9
BcaB03g15586 Brassica carinata HOM05D002078 ORTHO05D005680 3.6e-08 64.7 180 27.2
A08p08190 Brassica napus HOM05D008596 ORTHO05D003268 3.6e-08 64.7 218 23.4
Carub.0006s2663 Capsella rubella HOM05D009492 ORTHO05D011693 3.6e-08 64.7 101 34.7
CARHR181790 Cardamine hirsuta HOM05D008458 ORTHO05D010628 3.6e-08 64.7 63 50.8
Thhalv10023163m.g Eutrema salsugineum HOM05D010629 ORTHO05D016863 3.6e-08 64.7 101 34.7
RcHm_v2.0_Chr2g0084191 Rosa chinensis HOM05D031301 ORTHO05D010628 8.0e-08 63.5 115 33.9
BcaC09g50043 Brassica carinata HOM05D002078 ORTHO05D005680 1.0e-07 63.2 123 31.7
AT5G38190 Arabidopsis thaliana HOM05D034490 ORTHO05D019745 1.4e-07 62.8 187 27.3
BcaC02g10131 Brassica carinata HOM05D002078 ORTHO05D005680 1.4e-07 62.8 154 28.6
BcaC02g10884 Brassica carinata HOM05D002078 ORTHO05D005680 2.3e-07 62.0 123 32.5
BcaC09g49293 Brassica carinata HOM05D002078 ORTHO05D005680 2.3e-07 62.0 110 33.6
Carub.0007s3091 Capsella rubella HOM05D016834 ORTHO05D016863 2.3e-07 62.0 582 22.3
AT1G32010 Arabidopsis thaliana HOM05D010629 ORTHO05D019745 3.0e-07 61.6 189 26.5
Carub.0004s0637 Capsella rubella HOM05D009492 ORTHO05D011693 4.0e-07 61.2 197 29.4
BcaC03g16343 Brassica carinata HOM05D002078 ORTHO05D005680 5.2e-07 60.8 123 32.5
BcaC07g37265 Brassica carinata HOM05D006121 ORTHO05D009559 6.8e-07 60.5 103 34.0
BcaC07g37462 Brassica carinata HOM05D002078 ORTHO05D005680 6.8e-07 60.5 123 30.1
Carub.0005s0210 Capsella rubella HOM05D010629 ORTHO05D005680 6.8e-07 60.5 592 23.1
CARHR104300 Cardamine hirsuta HOM05D008458 ORTHO05D010628 1.2e-06 59.7 153 28.1
BcaC03g16426 Brassica carinata HOM05D002078 ORTHO05D005680 1.5e-06 59.3 173 27.2
BcaC08g43580 Brassica carinata HOM05D006121 ORTHO05D009559 1.5e-06 59.3 118 28.0
BcaC06g35841 Brassica carinata HOM05D006121 ORTHO05D009559 2.0e-06 58.9 103 33.0
BraA06t25464Z Brassica rapa HOM05D008596 ORTHO05D003268 2.6e-06 58.5 166 24.1
Sp6g07550 Schrenkiella parvula HOM05D010772 ORTHO05D005680 2.6e-06 58.5 101 31.7
CARHR218210 Cardamine hirsuta HOM05D008458 ORTHO05D010628 3.4e-06 58.2 65 41.5


User provided reference genes

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