Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G61600 Arabidopsis lyrata HOM05D004843 ORTHO05D005833 0.0e+00 1209.5 599 100.0
AT1G53200 Arabidopsis thaliana HOM05D004843 ORTHO05D005833 8.2e-311 1069.7 614 86.2
Carub.0001s4239 Capsella rubella HOM05D004843 ORTHO05D005833 5.3e-286 987.3 604 81.6
CARHR043430 Cardamine hirsuta HOM05D004843 ORTHO05D005833 2.3e-252 875.5 599 73.5
Thhalv10011326m.g Eutrema salsugineum HOM05D004843 ORTHO05D005833 7.5e-232 807.4 607 67.5
Aa31LG6G6390 Aethionema arabicum HOM05D000944 ORTHO05D003581 1.1e-219 766.9 606 66.2
Sp1g39780 Schrenkiella parvula HOM05D004843 ORTHO05D005833 5.4e-214 748.0 649 61.6
Thhalv10028227m.g Eutrema salsugineum HOM05D004843 ORTHO05D005833 2.7e-213 745.7 598 65.1
BcaB02g10938 Brassica carinata HOM05D004843 ORTHO05D005833 7.1e-206 721.1 636 59.9
BolC6t36637H Brassica oleracea HOM05D004843 ORTHO05D005833 7.9e-205 717.6 642 59.0
BraA05t20741Z Brassica rapa HOM05D004843 ORTHO05D005833 7.9e-205 717.6 642 58.9
A05p18490 Brassica napus HOM05D004843 ORTHO05D005833 1.8e-204 716.5 642 59.0
C06p14590 Brassica napus HOM05D004843 ORTHO05D005833 3.0e-204 715.7 642 58.9
BcaC08g44060 Brassica carinata HOM05D004843 ORTHO05D005833 5.1e-204 714.9 642 58.7
THA.LOC104798752 Tarenaya hassleriana HOM05D004843 ORTHO05D005833 1.7e-151 540.4 613 48.0
Aa31sc1038G10 Aethionema arabicum HOM05D004843 ORTHO05D005833 5.7e-147 525.4 474 61.0
BcaC08g43511 Brassica carinata HOM05D004843 ORTHO05D005833 1.3e-130 471.1 525 51.8
A06p01130 Brassica napus HOM05D004843 ORTHO05D005833 1.1e-113 414.8 331 65.9
BolC6t35976H Brassica oleracea HOM05D004843 ORTHO05D005833 8.1e-109 398.7 535 47.3
Cpa.g.sc131.81 Carica papaya HOM05D004843 ORTHO05D005833 1.1e-105 388.3 602 39.5
Ciclev10019192m.g Citrus clementina HOM05D004843 ORTHO05D005833 9.9e-99 365.2 612 38.6
Duzib268G0207 Durio zibethinus HOM05D004843 ORTHO05D005833 8.1e-93 345.5 598 36.6
Gohir.D05G347266 Gossypium hirsutum HOM05D004843 ORTHO05D005833 1.1e-92 345.1 605 38.2
Gohir.A04G036900 Gossypium hirsutum HOM05D004843 ORTHO05D005833 2.4e-92 344.0 605 37.4
CiPaw.08G115600 Carya illinoinensis HOM05D004843 ORTHO05D005833 1.2e-91 341.7 629 37.2
Gorai.009G374700 Gossypium raimondii HOM05D004843 ORTHO05D005833 3.4e-91 340.1 605 38.0
Glyma.12G227600 Glycine max HOM05D004843 ORTHO05D005833 1.0e-87 328.6 582 36.8
C06p08970 Brassica napus HOM05D004843 ORTHO05D005833 6.7e-87 325.9 322 57.5
GSVIVG01014249001 Vitis vinifera HOM05D004843 ORTHO05D005833 1.3e-85 321.6 603 34.3
Glyma.13G272600 Glycine max HOM05D004843 ORTHO05D005833 4.8e-85 319.7 605 35.4
PGR031G2553 Punica granatum HOM05D004843 ORTHO05D005833 6.2e-85 319.3 615 34.8
TWI38G0787 Tripterygium wilfordii HOM05D004843 ORTHO05D005833 8.1e-85 318.9 588 35.0
Eucgr.F03287 Eucalyptus grandis HOM05D004843 ORTHO05D005833 6.9e-84 315.8 611 34.2
Manes.15G090500 Manihot esculenta HOM05D004843 ORTHO05D005833 1.2e-83 315.1 619 36.0
VMungo1080G1831 Vigna mungo HOM05D004843 ORTHO05D005833 2.6e-83 313.9 609 34.8
MELO3C016086.2 Cucumis melo HOM05D004843 ORTHO05D005833 5.8e-83 312.8 603 34.5
Phvul.005G067200 Phaseolus vulgaris HOM05D004843 ORTHO05D005833 8.4e-82 308.9 614 34.5
Potri.012G106300 Populus trichocarpa HOM05D004843 ORTHO05D005833 1.1e-81 308.5 640 35.0
Sed0025158 Sechium edule HOM05D004843 ORTHO05D005833 2.5e-81 307.4 580 35.2
CsaV3_4G008440 Cucumis sativus L. HOM05D004843 ORTHO05D005833 5.5e-81 306.2 622 34.6
Lj1g0026777 Lotus japonicus HOM05D004843 ORTHO05D005833 3.5e-80 303.5 591 34.9
Cfa019615 Carpinus fangiana HOM05D004843 ORTHO05D005833 7.9e-80 302.4 620 33.5
CSS0025192 Camellia sinensis var. sinensis HOM05D004843 ORTHO05D005833 1.0e-79 302.0 635 34.6
QL11p026708 Quercus lobata HOM05D004843 ORTHO05D005833 1.0e-79 302.0 678 32.9
Hma1.2p1_0416F.1_g148560 Hydrangea macrophylla HOM05D004843 ORTHO05D005833 3.9e-79 300.1 643 33.1
Lj3g0014260 Lotus japonicus HOM05D004843 ORTHO05D005833 6.7e-79 299.3 617 34.4
MD03G1237200 Malus domestica HOM05D004843 ORTHO05D005833 6.7e-79 299.3 586 35.3
Dinv20222 Davidia involucrata HOM05D004843 ORTHO05D005833 2.5e-78 297.4 587 34.9
Actinidia35229 Actinidia chinensis HOM05D004843 ORTHO05D005833 3.3e-78 297.0 625 34.4
TPR.G29644 Trifolium pratense HOM05D004843 ORTHO05D005833 5.7e-78 296.2 618 33.8
ClCG07G009890 Citrullus lanatus HOM05D004843 ORTHO05D005833 9.6e-78 295.4 606 33.5
MD10G1064700 Malus domestica HOM05D004843 ORTHO05D005833 1.3e-77 295.0 585 34.9
Prupe.4G172200 Prunus persica HOM05D004843 ORTHO05D005833 1.3e-77 295.0 583 35.0
TAR627G0485 Trochodendron aralioides HOM05D004843 ORTHO05D005833 8.2e-77 292.4 612 33.7
Psat5g240000 Pisum sativum HOM05D004843 ORTHO05D005833 1.1e-76 292.0 621 34.3
Oeu024378.1 Olea europaea HOM05D004843 ORTHO05D005833 5.3e-76 289.7 630 33.3
MSTRG.12883 Avicennia marina HOM05D004843 ORTHO05D005833 1.5e-75 288.1 616 32.0
RcHm_v2.0_Chr5g0031851 Rosa chinensis HOM05D004843 ORTHO05D005833 7.6e-75 285.8 642 34.0
RcHm_v2.0_Chr6g0312691 Rosa chinensis HOM05D004843 ORTHO05D005833 1.7e-74 284.6 625 32.8
Nn1g06340 Nelumbo nucifera HOM05D004843 ORTHO05D005833 2.9e-74 283.9 581 32.5
arahy.Tifrunner.gnm1.ann1.60B7R0 Arachis hypogaea HOM05D004843 ORTHO05D005833 5.0e-74 283.1 588 33.0
FvH4_3g19060 Fragaria vesca HOM05D004843 ORTHO05D005833 5.0e-74 283.1 620 34.5
Sabra12G0078800 Salix brachista HOM05D004843 ORTHO05D005833 5.0e-74 283.1 691 32.3
Lalb_Chr25g0286141 Lupinus albus HOM05D004843 ORTHO05D005833 8.4e-74 282.3 613 33.3
BraA06t23340Z Brassica rapa HOM05D004843 ORTHO05D005833 7.2e-73 279.3 182 74.7
EL10Ac4g08285 Beta vulgaris HOM05D004843 ORTHO05D005833 2.1e-72 277.7 623 32.4
FAN25G1696 Fragaria x ananassa HOM05D004843 ORTHO05D005833 1.0e-71 275.4 622 33.9
arahy.Tifrunner.gnm1.ann1.G1PXE9 Arachis hypogaea HOM05D004843 ORTHO05D005833 2.5e-70 270.8 575 33.0
Lsat_1_v5_gn_5_128660 Lactuca sativa HOM05D004843 ORTHO05D005833 2.5e-70 270.8 622 32.6
DCAR_021007 Daucus carota HOM05D004843 ORTHO05D005833 7.4e-70 269.2 612 32.5
Nitab4.5_0007508g0020 Nicotiana tabacum HOM05D004843 ORTHO05D005833 6.3e-69 266.2 620 31.3
SGA_v2.0_scaffold70G23704 Striga asiatica HOM05D004843 ORTHO05D005833 1.8e-68 264.6 628 31.7
vmacro09509 Vaccinium macrocarpon HOM05D004843 ORTHO05D005833 3.1e-68 263.8 665 31.1
Aqoxy4G00544 Aquilegia oxysepala HOM05D004843 ORTHO05D005833 2.6e-67 260.8 612 32.5
AUR62036128 Chenopodium quinoa HOM05D004843 ORTHO05D005833 3.4e-67 260.4 612 30.6
Lj1C835G2 Lonicera japonica HOM05D004843 ORTHO05D005833 4.5e-67 260.0 596 31.4
Medtr2g078390 Medicago truncatula HOM05D004843 ORTHO05D005833 1.7e-66 258.1 621 32.0
Hund13862 Selenicereus undatus HOM05D004843 ORTHO05D005833 1.4e-65 255.0 701 30.8
Solyc12g014090.2 Solanum lycopersicum HOM05D004843 ORTHO05D005833 1.4e-65 255.0 611 31.9
Sopen12g005870 Solanum pennellii HOM05D004843 ORTHO05D005833 4.2e-65 253.4 611 31.8
Cc05_g11520 Coffea canephora HOM05D004843 ORTHO05D005833 3.6e-64 250.4 595 31.4
FAN11G0804 Fragaria x ananassa HOM05D004843 ORTHO05D005833 2.3e-63 247.7 620 32.4
CAN.G765.5 Capsicum annuum HOM05D004843 ORTHO05D005833 5.1e-63 246.5 621 30.4
HanXRQChr10g0302381 Helianthus annuus HOM05D004843 ORTHO05D005833 2.0e-62 244.6 587 32.0
Oeu061997.2 Olea europaea HOM05D004843 ORTHO05D005833 1.7e-61 241.5 607 30.6
Rhsim04G0023600 Rhododendron simsii HOM05D004843 ORTHO05D005833 3.1e-60 237.3 699 28.6
Sc03g0010280 Simmondsia chinensis HOM05D004843 ORTHO05D005833 4.1e-60 236.9 593 31.9
Oeu061325.2 Olea europaea HOM05D004843 ORTHO05D005833 1.5e-59 235.0 516 31.2
DCAR_031588 Daucus carota HOM05D004843 ORTHO05D005833 5.9e-59 233.0 553 32.0
Thecc.07G102200 Theobroma cacao HOM05D004843 ORTHO05D005833 5.9e-59 233.0 286 45.1
Nitab4.5_0003077g0040 Nicotiana tabacum HOM05D004843 ORTHO05D005833 5.0e-58 229.9 586 30.4
AUR62019511 Chenopodium quinoa HOM05D004843 ORTHO05D005833 5.5e-57 226.5 528 30.7
Glyma.13G009900 Glycine max HOM05D004843 ORTHO05D005833 2.3e-55 221.1 509 31.6
CSS0012812 Camellia sinensis var. sinensis HOM05D004843 ORTHO05D005833 3.3e-54 217.2 450 36.0
SalBow7G4166 Salvia bowleyana HOM05D004843 ORTHO05D005833 5.7e-54 216.5 497 32.2
AUR62026744 Chenopodium quinoa HOM05D004843 ORTHO05D005833 1.3e-53 215.3 501 30.9
CiPaw.11G165700 Carya illinoinensis HOM05D004843 ORTHO05D005833 4.8e-53 213.4 630 29.5
PSO832G1805 Papaver somniferum HOM05D004843 ORTHO05D005833 1.4e-52 211.8 588 29.4
Thecc.07G102000 Theobroma cacao HOM05D004843 ORTHO05D005833 2.4e-52 211.1 246 46.7
Migut.H01969 Erythranthe guttata HOM05D004843 ORTHO05D005833 1.7e-50 204.9 613 29.9
Peaxi162Scf00000g02614 Petunia axillaris HOM05D004843 ORTHO05D005833 1.1e-49 202.2 431 34.1
Phvul.005G068700 Phaseolus vulgaris HOM05D004843 ORTHO05D005833 2.7e-48 197.6 445 32.6
TWI31G0686 Tripterygium wilfordii HOM05D004843 ORTHO05D005833 3.6e-48 197.2 539 28.4
ATR0165G025 Amborella trichopoda HOM05D004843 ORTHO05D005833 6.1e-48 196.4 600 28.7
PSO210G0781 Papaver somniferum HOM05D004843 ORTHO05D005833 1.0e-47 195.7 586 29.4
SEGI_17777 Sequoiadendron giganteum HOM05D004843 ORTHO05D005833 1.2e-43 182.2 547 27.2
Aqoxy7G02743 Aquilegia oxysepala HOM05D004843 ORTHO05D005833 2.2e-42 177.9 261 42.1
unitig_26.g10042 Utricularia gibba HOM05D004843 ORTHO05D005833 6.5e-42 176.4 450 30.4
Atru.chr2.138 Acer truncatum HOM05D004843 ORTHO05D005833 7.2e-41 172.9 226 40.7
MBI02_g30880_MAGBIO Magnolia biondii HOM05D004843 ORTHO05D005833 2.0e-38 164.9 306 33.3
Haze_09370 Corylus avellana HOM05D004843 ORTHO05D005833 9.8e-38 162.5 412 32.0
Os06g0244100 Oryza sativa ssp. japonica HOM05D004843 ORTHO05D005833 4.8e-37 160.2 568 25.4
SalBow7G4326 Salvia bowleyana HOM05D004843 ORTHO05D005833 1.1e-36 159.1 460 30.0
CDE10G0946 Ceratophyllum demersum HOM05D004843 ORTHO05D005833 9.1e-36 156.0 431 28.8
Zm00001eb280030 Zea mays HOM05D004843 ORTHO05D005833 5.9e-35 153.3 563 25.6
ECA234G3172 Erigeron canadensis HOM05D004843 ORTHO05D005833 1.0e-34 152.5 336 33.9
Ca_15018_v3 Cicer arietinum L. HOM05D004843 ORTHO05D005833 3.8e-34 150.6 419 29.8
Thecc.07G101600 Theobroma cacao HOM05D004843 ORTHO05D005833 8.5e-34 149.4 160 48.8
HPP92_010831 Vanilla planifolia HOM05D004843 ORTHO05D005833 7.2e-33 146.4 302 31.8
BcaB07g33349 Brassica carinata HOM05D004843 ORTHO05D005833 1.6e-32 145.2 154 51.3
Thecc.07G101400 Theobroma cacao HOM05D004843 ORTHO05D005833 1.5e-30 138.7 160 45.6
Mapoly0139s0008 Marchantia polymorpha HOM05D004843 ORTHO05D005833 2.7e-27 127.9 620 25.2
Pp3c12_9280 Physcomitrium patens HOM05D004843 ORTHO05D005833 5.9e-27 126.7 608 23.4
HPP92_010833 Vanilla planifolia HOM05D004843 ORTHO05D005833 2.9e-26 124.4 375 26.9
Oeu038157.2 Olea europaea HOM05D004843 ORTHO05D005833 1.6e-24 118.6 232 33.2
DCAR_032123 Daucus carota HOM05D004843 ORTHO05D005833 2.8e-24 117.9 175 37.7
Ca_04025_v3 Cicer arietinum L. HOM05D004843 ORTHO05D005833 4.0e-23 114.0 392 26.5
Oeu027285.1 Olea europaea HOM05D004843 ORTHO05D005833 2.2e-21 108.2 161 38.5
Oeu018948.1 Olea europaea HOM05D004843 ORTHO05D005833 2.4e-20 104.8 298 31.2
Thecc.07G102300 Theobroma cacao HOM05D004843 ORTHO05D005833 2.0e-19 101.7 202 32.2
Atru.chr2.140 Acer truncatum HOM05D004843 ORTHO05D005833 2.7e-19 101.3 183 36.1
BraA09t38198Z Brassica rapa HOM05D004843 ORTHO05D005833 6.6e-18 96.7 108 57.4
A09p55300 Brassica napus HOM05D004843 ORTHO05D005833 1.2e-16 92.4 110 52.7
AagrBONN_evm.TU.Sc2ySwM_228.3860 Anthoceros agrestis HOM05D004843 ORTHO05D005833 1.5e-14 85.5 433 21.2
CAN.G349.2 Capsicum annuum HOM05D004843 ORTHO05D005833 7.5e-14 83.2 145 34.5
CAN.G349.3 Capsicum annuum HOM05D004843 ORTHO05D005833 1.3e-13 82.4 253 30.4
SHI27679 Sapria himalayana HOM05D000105 ORTHO05D000023 1.9e-12 78.6 153 34.6
C06p08980 Brassica napus HOM05D004843 ORTHO05D005833 1.4e-07 62.4 90 38.9
SHI27676 Sapria himalayana HOM05D004843 ORTHO05D005833 4.4e-06 57.4 309 20.7


User provided reference genes

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