Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G61490 Arabidopsis lyrata HOM05D003240 ORTHO05D009426 1.1e-68 263.5 131 100.0
AT1G53130 Arabidopsis thaliana HOM05D003240 ORTHO05D009426 5.0e-64 248.1 131 93.1
CARHR043350 Cardamine hirsuta HOM05D003240 ORTHO05D009426 4.4e-60 235.0 131 85.5
Carub.0001s4229 Capsella rubella HOM05D003240 ORTHO05D009426 4.8e-59 231.5 132 87.1
Thhalv10012399m.g Eutrema salsugineum HOM05D003240 ORTHO05D009426 8.2e-59 230.7 131 87.0
BcaB07g33356 Brassica carinata HOM05D003240 ORTHO05D009426 1.1e-55 220.3 131 83.2
Sp1g39680 Schrenkiella parvula HOM05D003240 ORTHO05D009426 5.5e-55 218.0 132 82.6
Aa31LG10G2000 Aethionema arabicum HOM05D003240 ORTHO05D009426 8.8e-53 210.7 132 79.5
A06p01190 Brassica napus HOM05D003240 ORTHO05D009426 2.0e-52 209.5 131 80.2
BraA06t23346Z Brassica rapa HOM05D003240 ORTHO05D009426 2.6e-52 209.1 131 79.4
BcaC08g43498 Brassica carinata HOM05D003240 ORTHO05D009426 8.3e-51 204.1 131 78.6
C06p08830 Brassica napus HOM05D003240 ORTHO05D009426 8.3e-51 204.1 131 78.6
BolC6t35961H Brassica oleracea HOM05D003240 ORTHO05D017503 8.3e-51 204.1 131 78.6
AL3G27700 Arabidopsis lyrata HOM05D003240 ORTHO05D009426 2.7e-49 199.1 131 74.8
Sp3g13510 Schrenkiella parvula HOM05D003240 ORTHO05D009426 2.2e-48 196.1 126 75.4
Thhalv10022293m.g Eutrema salsugineum HOM05D003240 ORTHO05D009426 4.2e-47 191.8 132 72.7
Carub.0003s1496 Capsella rubella HOM05D003240 ORTHO05D009426 5.2e-45 184.9 132 70.5
THA.LOC104818082 Tarenaya hassleriana HOM05D003240 ORTHO05D009426 2.2e-43 179.5 132 70.5
BcaB04g20937 Brassica carinata HOM05D000882 ORTHO05D009426 1.5e-39 166.8 118 70.3
BcaC09g48486 Brassica carinata HOM05D003240 ORTHO05D009426 2.5e-31 139.4 131 55.7
BcaNung07375 Brassica carinata HOM05D003240 ORTHO05D009426 4.0e-29 132.1 131 52.7
CiPaw.12G118800 Carya illinoinensis HOM05D003240 ORTHO05D009426 1.0e-24 117.5 124 54.0
TWI38G1889 Tripterygium wilfordii HOM05D003240 ORTHO05D009426 1.7e-24 116.7 122 52.5
PGR083G0779 Punica granatum HOM05D003240 ORTHO05D009426 5.0e-24 115.2 125 50.4
Nitab4.5_0001336g0090 Nicotiana tabacum HOM05D003240 ORTHO05D009426 1.2e-22 110.5 125 52.8
Thecc.07G091300 Theobroma cacao HOM05D003240 ORTHO05D009426 6.2e-22 108.2 130 50.8
CANSAT56G1752 Cannabis sativa HOM05D003240 ORTHO05D009426 8.0e-22 107.8 90 58.9
Potri.001G399200 Populus trichocarpa HOM05D003240 ORTHO05D009426 1.1e-21 107.5 125 49.6
Potri.011G118600 Populus trichocarpa HOM05D003240 ORTHO05D009426 1.1e-21 107.5 125 47.2
Haze_09435 Corylus avellana HOM05D003240 ORTHO05D009426 1.4e-21 107.1 120 50.8
Nitab4.5_0001241g0070 Nicotiana tabacum HOM05D003240 ORTHO05D009426 2.3e-21 106.3 124 50.0
Sabra16G0261800 Salix brachista HOM05D003240 ORTHO05D009426 2.3e-21 106.3 123 47.2
CAN.G162.53 Capsicum annuum HOM05D003240 ORTHO05D009426 4.0e-21 105.5 129 48.1
Prupe.4G180300 Prunus persica HOM05D003240 ORTHO05D009426 4.0e-21 105.5 121 46.3
FAN25G3490 Fragaria x ananassa HOM05D003240 ORTHO05D009426 6.8e-21 104.8 123 44.7
RcHm_v2.0_Chr5g0033251 Rosa chinensis HOM05D003240 ORTHO05D009426 1.2e-20 104.0 122 46.7
FAN21G1097 Fragaria x ananassa HOM05D003240 ORTHO05D009426 1.5e-20 103.6 123 44.7
Migut.M00801 Erythranthe guttata HOM05D003240 ORTHO05D009426 2.0e-20 103.2 128 48.4
FvH4_3g19820 Fragaria vesca HOM05D003240 ORTHO05D009426 2.0e-20 103.2 123 43.9
Haze_09433 Corylus avellana HOM05D003240 ORTHO05D009426 2.6e-20 102.8 126 48.4
Duzib213G1023 Durio zibethinus HOM05D003240 ORTHO05D009426 2.6e-20 102.8 123 47.2
Oeu019313.1 Olea europaea HOM05D003240 ORTHO05D009426 2.6e-20 102.8 122 48.4
FAN16G0971 Fragaria x ananassa HOM05D003240 ORTHO05D009426 3.4e-20 102.4 123 43.9
Nn1g06519 Nelumbo nucifera HOM05D003240 ORTHO05D009426 9.8e-20 100.9 127 40.2
Hma1.2p1_0458F.1_g157060 Hydrangea macrophylla HOM05D003240 ORTHO05D009426 1.3e-19 100.5 123 46.3
Ciclev10010456m.g Citrus clementina HOM05D003240 ORTHO05D009426 2.2e-19 99.8 119 47.9
Atru.chr2.2486 Acer truncatum HOM05D003240 ORTHO05D009426 3.7e-19 99.0 134 44.8
Cpa.g.sc80.73 Carica papaya HOM05D003240 ORTHO05D009426 3.7e-19 99.0 88 58.0
MD03G1228400 Malus domestica HOM05D003240 ORTHO05D009426 4.9e-19 98.6 122 45.9
SGA_v2.0_scaffold73G24260 Striga asiatica HOM05D003240 ORTHO05D009426 8.3e-19 97.8 72 63.9
Eucgr.F01147 Eucalyptus grandis HOM05D003240 ORTHO05D009426 1.1e-18 97.4 125 44.8
VMungo1080G0324 Vigna mungo HOM05D003240 ORTHO05D009426 1.4e-18 97.1 132 45.5
MBI06_g23076_MAGBIO Magnolia biondii HOM05D003240 ORTHO05D009426 1.9e-18 96.7 120 46.7
Hma1.2p1_0458F.1_g157080 Hydrangea macrophylla HOM05D003240 ORTHO05D009426 3.2e-18 95.9 123 48.8
Sabra11G0103500 Salix brachista HOM05D003240 ORTHO05D009426 4.1e-18 95.5 124 42.7
Hma1.2p1_0458F.1_g157090 Hydrangea macrophylla HOM05D003240 ORTHO05D009426 5.4e-18 95.1 90 57.8
Aqoxy1G02389 Aquilegia oxysepala HOM05D003240 ORTHO05D009426 7.0e-18 94.7 127 44.1
Manes.15G087500 Manihot esculenta HOM05D003240 ORTHO05D009426 7.0e-18 94.7 115 48.7
Lj3g0021284 Lotus japonicus HOM05D003240 ORTHO05D009426 1.6e-17 93.6 132 43.9
Phvul.005G072700 Phaseolus vulgaris HOM05D003240 ORTHO05D009426 2.1e-17 93.2 128 44.5
Gorai.009G384600 Gossypium raimondii HOM05D003240 ORTHO05D009426 2.7e-17 92.8 129 43.4
Cfa020576 Carpinus fangiana HOM05D003240 ORTHO05D009426 3.5e-17 92.4 113 49.6
DCAR_017136 Daucus carota HOM05D003240 ORTHO05D009426 3.5e-17 92.4 126 45.2
Gorai.009G385100 Gossypium raimondii HOM05D003240 ORTHO05D009426 3.5e-17 92.4 90 52.2
COL.COLO4_27180 Corchorus olitorius HOM05D003240 ORTHO05D009426 4.6e-17 92.0 129 41.1
DCAR_013111 Daucus carota HOM05D003240 ORTHO05D009426 4.6e-17 92.0 84 53.6
Gohir.A04G031760 Gossypium hirsutum HOM05D003240 ORTHO05D009426 4.6e-17 92.0 90 52.2
Gohir.A04G031920 Gossypium hirsutum HOM05D003240 ORTHO05D009426 4.6e-17 92.0 90 52.2
Gohir.D05G352600 Gossypium hirsutum HOM05D003240 ORTHO05D009426 4.6e-17 92.0 90 52.2
Gohir.D05G352700 Gossypium hirsutum HOM05D003240 ORTHO05D009426 4.6e-17 92.0 90 52.2
Gorai.009G384900 Gossypium raimondii HOM05D003240 ORTHO05D009426 4.6e-17 92.0 90 52.2
Gohir.D05G352500 Gossypium hirsutum HOM05D003240 ORTHO05D009426 6.0e-17 91.7 129 43.4
Gorai.009G384700 Gossypium raimondii HOM05D003240 ORTHO05D009426 6.0e-17 91.7 90 52.2
Hma1.2p1_0898F.1_g234470 Hydrangea macrophylla HOM05D003240 ORTHO05D009426 6.0e-17 91.7 114 45.6
Glyma.12G225100 Glycine max HOM05D003240 ORTHO05D009426 7.8e-17 91.3 131 42.7
Medtr2g085370 Medicago truncatula HOM05D003240 ORTHO05D009426 1.0e-16 90.9 127 42.5
MBI07_g30192_MAGBIO Magnolia biondii HOM05D003240 ORTHO05D009426 1.3e-16 90.5 122 42.6
Gohir.A04G032000 Gossypium hirsutum HOM05D003240 ORTHO05D009426 1.7e-16 90.1 95 48.4
Dinv14922 Davidia involucrata HOM05D003240 ORTHO05D009426 2.3e-16 89.7 125 40.0
Gohir.A04G032100 Gossypium hirsutum HOM05D003240 ORTHO05D009426 3.0e-16 89.4 125 42.4
Lj3g0010365 Lotus japonicus HOM05D003240 ORTHO05D009426 5.1e-16 88.6 127 43.3
Gorai.009G385000 Gossypium raimondii HOM05D003240 ORTHO05D009426 6.6e-16 88.2 86 50.0
TAR627G0347 Trochodendron aralioides HOM05D003240 ORTHO05D009426 1.1e-15 87.4 56 62.5
Nn4g25258 Nelumbo nucifera HOM05D003240 ORTHO05D009426 1.5e-15 87.0 125 39.2
Prupe.4G180400 Prunus persica HOM05D003240 ORTHO05D009426 1.9e-15 86.7 122 45.1
Sopen07g031280 Solanum pennellii HOM05D003240 ORTHO05D009426 5.6e-15 85.1 116 46.6
PGSC0003DMG400012465 Solanum tuberosum HOM05D003240 ORTHO05D009426 7.3e-15 84.7 114 43.0
Cfa020578 Carpinus fangiana HOM05D003240 ORTHO05D009426 1.2e-14 84.0 110 45.5
Cc05_g11970 Coffea canephora HOM05D003240 ORTHO05D009426 2.1e-14 83.2 86 52.3
CSS0038111 Camellia sinensis var. sinensis HOM05D003240 ORTHO05D009426 4.7e-14 82.0 126 41.3
CSS0044584 Camellia sinensis var. sinensis HOM05D003240 ORTHO05D009426 6.2e-14 81.6 126 41.3
Medtr2g085360 Medicago truncatula HOM05D003240 ORTHO05D009426 3.1e-13 79.3 68 54.4
PSO675G7736 Papaver somniferum HOM05D003240 ORTHO05D009426 4.0e-13 79.0 58 56.9
TPR.G38961 Trifolium pratense HOM05D003240 ORTHO05D009426 3.4e-12 75.9 121 42.1
PSO541G3864 Papaver somniferum HOM05D003240 ORTHO05D009426 5.8e-12 75.1 114 36.8
Glyma.13G276200 Glycine max HOM05D003240 ORTHO05D009426 9.9e-12 74.3 116 37.9
ATR0737G149 Amborella trichopoda HOM05D003240 ORTHO05D009426 1.3e-11 73.9 56 58.9
Nn1g04123 Nelumbo nucifera HOM05D003240 ORTHO05D009426 1.7e-11 73.6 41 70.7
Lalb_Chr03g0042631 Lupinus albus HOM05D003240 ORTHO05D009426 3.7e-11 72.4 123 39.8
TPR.G39028 Trifolium pratense HOM05D003240 ORTHO05D009426 8.3e-11 71.2 127 37.0
unitig_37.g12571 Utricularia gibba HOM05D003240 ORTHO05D009426 7.1e-10 68.2 63 47.6
Rhsim06G0199500 Rhododendron simsii HOM05D003240 ORTHO05D009426 4.3e-07 58.9 46 60.9


User provided reference genes

Program Settings