Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G57410 Arabidopsis lyrata HOM05D006481 ORTHO05D008160 0.0e+00 1330.9 845 100.0
AT1G49870 Arabidopsis thaliana HOM05D006481 ORTHO05D008160 0.0e+00 1142.1 846 90.4
Carub.0001s3908 Capsella rubella HOM05D006481 ORTHO05D008160 9.7e-310 1066.6 848 82.8
Sp1g36750 Schrenkiella parvula HOM05D006481 ORTHO05D008160 9.8e-302 1040.0 862 82.8
Thhalv10011233m.g Eutrema salsugineum HOM05D006481 ORTHO05D008160 2.8e-293 1011.9 862 79.2
CARHR039920 Cardamine hirsuta HOM05D006481 ORTHO05D008160 8.6e-282 973.8 850 81.6
A08p03520 Brassica napus HOM05D006481 ORTHO05D008160 2.5e-265 919.1 860 78.5
BolC8t47171H Brassica oleracea HOM05D006481 ORTHO05D008160 1.4e-260 903.3 859 77.6
C08p03680 Brassica napus HOM05D006481 ORTHO05D008160 1.2e-251 873.6 860 75.9
BraA08t32385Z Brassica rapa HOM05D006481 ORTHO05D008160 3.6e-248 862.1 853 76.0
BcaB04g17289 Brassica carinata HOM05D006481 ORTHO05D008160 4.6e-243 845.1 847 74.5
Aa31LG10G4220 Aethionema arabicum HOM05D006481 ORTHO05D008160 3.7e-192 676.0 880 62.5
THA.LOC104825834 Tarenaya hassleriana HOM05D006481 ORTHO05D008160 3.3e-156 556.6 821 54.3
Gorai.008G021000 Gossypium raimondii HOM05D006481 ORTHO05D008160 4.0e-122 443.4 897 43.7
Gohir.D12G020600 Gossypium hirsutum HOM05D006481 ORTHO05D008160 7.9e-118 429.1 780 45.3
Thecc.02G113600 Theobroma cacao HOM05D006481 ORTHO05D008160 3.9e-117 426.8 796 45.2
COL.COLO4_32543 Corchorus olitorius HOM05D006481 ORTHO05D008160 2.5e-116 424.1 792 44.3
Duzib132G1015 Durio zibethinus HOM05D006481 ORTHO05D008160 1.3e-115 421.8 773 46.1
Gohir.A12G020400 Gossypium hirsutum HOM05D006481 ORTHO05D008160 8.2e-115 419.1 982 41.0
Prupe.8G140600 Prunus persica HOM05D006481 ORTHO05D008160 5.3e-114 416.4 832 43.6
Manes.10G058310 Manihot esculenta HOM05D006481 ORTHO05D008160 2.6e-113 414.1 814 44.7
Cfa004657 Carpinus fangiana HOM05D006481 ORTHO05D008160 2.1e-110 404.4 956 38.1
MD05G1096200 Malus domestica HOM05D006481 ORTHO05D008160 3.5e-110 403.7 816 47.8
Haze_10252 Corylus avellana HOM05D006481 ORTHO05D008160 7.9e-110 402.5 953 41.6
Dinv42219 Davidia involucrata HOM05D006481 ORTHO05D008160 6.3e-107 392.9 437 55.6
Lj5g0022753 Lotus japonicus HOM05D006481 ORTHO05D008160 1.1e-106 392.1 747 47.4
CiPaw.05G015400 Carya illinoinensis HOM05D006481 ORTHO05D008160 2.4e-106 391.0 796 39.3
Nitab4.5_0001105g0200 Nicotiana tabacum HOM05D006481 ORTHO05D008160 3.4e-105 387.1 798 40.6
FAN15G2146 Fragaria x ananassa HOM05D006481 ORTHO05D008160 2.9e-104 384.0 808 44.1
Cpa.g.sc106.79 Carica papaya HOM05D006481 ORTHO05D008160 5.0e-104 383.3 446 55.4
QL11p031947 Quercus lobata HOM05D006481 ORTHO05D008160 5.5e-103 379.8 446 54.9
FvH4_2g03900 Fragaria vesca HOM05D006481 ORTHO05D008160 1.2e-102 378.6 817 44.3
FAN27G2785 Fragaria x ananassa HOM05D006481 ORTHO05D008160 4.6e-102 376.7 817 44.3
Lalb_Chr02g0145111 Lupinus albus HOM05D006481 ORTHO05D008160 4.6e-102 376.7 905 39.1
Dinv15788 Davidia involucrata HOM05D006481 ORTHO05D008160 1.0e-101 375.6 898 38.3
CSS0020952 Camellia sinensis var. sinensis HOM05D006481 ORTHO05D008160 3.9e-101 373.6 810 41.7
Nitab4.5_0004685g0050 Nicotiana tabacum HOM05D006481 ORTHO05D008160 5.1e-101 373.2 795 40.4
Medtr1g106795 Medicago truncatula HOM05D006481 ORTHO05D008160 2.5e-100 370.9 734 44.1
TWI14G1262 Tripterygium wilfordii HOM05D006481 ORTHO05D008160 2.5e-100 370.9 478 53.1
CSS0029586 Camellia sinensis var. sinensis HOM05D006481 ORTHO05D008160 1.3e-99 368.6 812 41.7
arahy.Tifrunner.gnm1.ann1.RQ9967 Arachis hypogaea HOM05D006481 ORTHO05D008160 1.7e-99 368.2 747 43.4
Lj5A217G88 Lonicera japonica HOM05D006481 ORTHO05D008160 1.7e-99 368.2 776 42.7
RcHm_v2.0_Chr6g0252931 Rosa chinensis HOM05D006481 ORTHO05D008160 1.1e-98 365.5 820 42.3
arahy.Tifrunner.gnm1.ann1.IH69Y8 Arachis hypogaea HOM05D006481 ORTHO05D008160 1.4e-98 365.2 750 44.0
MELO3C017986.2 Cucumis melo HOM05D006481 ORTHO05D008160 1.8e-98 364.8 744 42.6
TAR376G0872 Trochodendron aralioides HOM05D006481 ORTHO05D008160 2.4e-98 364.4 848 39.5
Glyma.20G132200 Glycine max HOM05D006481 ORTHO05D008160 1.2e-97 362.1 884 44.5
Potri.009G090900 Populus trichocarpa HOM05D006481 ORTHO05D008160 5.9e-97 359.8 795 44.0
Sopen01g049510 Solanum pennellii HOM05D006481 ORTHO05D008160 5.9e-97 359.8 882 35.9
Sed0008985 Sechium edule HOM05D006481 ORTHO05D008160 1.3e-96 358.6 690 41.7
Actinidia34372 Actinidia chinensis HOM05D006481 ORTHO05D008160 2.9e-96 357.5 907 36.2
CAN.G606.42 Capsicum annuum HOM05D006481 ORTHO05D008160 1.1e-95 355.5 1009 35.0
CsaV3_4G000490 Cucumis sativus L. HOM05D006481 ORTHO05D008160 1.1e-95 355.5 736 42.4
Sabra09G0070200 Salix brachista HOM05D006481 ORTHO05D008160 3.2e-95 354.0 782 44.4
Ca_11047_v3 Cicer arietinum L. HOM05D006481 ORTHO05D008160 4.2e-95 353.6 743 44.0
AUR62027350 Chenopodium quinoa HOM05D006481 ORTHO05D008160 7.2e-95 352.8 699 39.3
Solyc01g107260.4 Solanum lycopersicum HOM05D006481 ORTHO05D008160 2.7e-94 350.9 869 37.6
VMungo0720G0067 Vigna mungo HOM05D006481 ORTHO05D008160 6.1e-94 349.7 831 43.1
Potri.001G296700 Populus trichocarpa HOM05D006481 ORTHO05D008160 2.3e-93 347.8 798 42.4
AUR62031332 Chenopodium quinoa HOM05D006481 ORTHO05D008160 3.9e-93 347.1 698 38.3
Phvul.007G043300 Phaseolus vulgaris HOM05D006481 ORTHO05D008160 3.3e-92 344.0 854 41.0
Ciclev10027845m.g Citrus clementina HOM05D006481 ORTHO05D008160 5.7e-92 343.2 844 35.8
Sabra16G0185800 Salix brachista HOM05D006481 ORTHO05D008160 5.7e-92 343.2 769 43.7
vmacro01976 Vaccinium macrocarpon HOM05D006481 ORTHO05D008160 7.4e-92 342.8 704 38.8
Aqoxy6G02732 Aquilegia oxysepala HOM05D006481 ORTHO05D008160 9.7e-92 342.4 463 48.6
DCAR_021965 Daucus carota HOM05D006481 ORTHO05D008160 3.7e-91 340.5 578 46.7
Cc02_g30880 Coffea canephora HOM05D006481 ORTHO05D008160 2.4e-90 337.8 434 49.1
Psat6g216240 Pisum sativum HOM05D006481 ORTHO05D008160 1.2e-89 335.5 413 53.5
EL10Ac8g19363 Beta vulgaris HOM05D006481 ORTHO05D008160 1.5e-89 335.1 735 40.5
Atru.BG.62.p Acer truncatum HOM05D006481 ORTHO05D008160 2.0e-89 334.7 390 53.8
PSO541G1903 Papaver somniferum HOM05D006481 ORTHO05D008160 2.6e-89 334.3 442 50.7
ECA234G0568 Erigeron canadensis HOM05D006481 ORTHO05D008160 3.5e-89 334.0 442 49.1
Oeu021369.1 Olea europaea HOM05D006481 ORTHO05D008160 3.5e-89 334.0 763 37.5
PSO675G3182 Papaver somniferum HOM05D006481 ORTHO05D008160 3.5e-89 334.0 447 49.7
unitig_744.g24217 Utricularia gibba HOM05D006481 ORTHO05D008160 5.9e-89 333.2 754 39.3
MSTRG.16692 Avicennia marina HOM05D006481 ORTHO05D008160 1.3e-88 332.0 449 49.0
TPR.G27130 Trifolium pratense HOM05D006481 ORTHO05D008160 4.2e-87 327.0 742 43.9
ClCG10G010570 Citrullus lanatus HOM05D006481 ORTHO05D008160 6.7e-85 319.7 647 40.2
SalBow6G0734 Salvia bowleyana HOM05D006481 ORTHO05D008160 1.8e-82 311.6 430 48.6
GSVIVG01037865001 Vitis vinifera HOM05D006481 ORTHO05D008160 4.1e-82 310.5 472 45.8
Ah.14g085520 Amaranthus hybridus HOM05D006481 ORTHO05D008160 7.7e-81 306.2 815 36.8
Rhsim11G0154700 Rhododendron simsii HOM05D006481 ORTHO05D008160 1.0e-80 305.8 819 34.7
RhsimUnG0125900 Rhododendron simsii HOM05D006481 ORTHO05D008160 3.8e-80 303.9 815 34.4
HanXRQChr16g0514441 Helianthus annuus HOM05D006481 ORTHO05D008160 8.5e-80 302.8 387 48.6
Lsat_1_v5_gn_5_114361 Lactuca sativa HOM05D006481 ORTHO05D008160 1.8e-77 295.0 467 43.7
PGSC0003DMG400025848 Solanum tuberosum HOM05D006481 ORTHO05D008160 5.2e-77 293.5 435 44.6
Migut.B00421 Erythranthe guttata HOM05D006481 ORTHO05D008160 2.0e-76 291.6 746 34.5
ATR0030G005 Amborella trichopoda HOM05D006481 ORTHO05D008160 3.4e-76 290.8 389 50.6
TAR628G0609 Trochodendron aralioides HOM05D006481 ORTHO05D008160 2.2e-75 288.1 363 49.3
Os03g0604600 Oryza sativa ssp. japonica HOM05D006481 ORTHO05D008160 5.4e-74 283.5 429 45.5
SGA_v2.0_scaffold225G43011 Striga asiatica HOM05D006481 ORTHO05D008160 1.5e-71 275.4 764 37.8
HPP92_017760 Vanilla planifolia HOM05D006481 ORTHO05D008160 1.9e-71 275.0 374 45.5
Zm00001eb050130 Zea mays HOM05D006481 ORTHO05D008160 7.2e-71 273.1 383 46.5
Peaxi162Scf00016g02732 Petunia axillaris HOM05D006481 ORTHO05D008160 6.3e-67 260.0 595 39.5
Eucgr.I01079 Eucalyptus grandis HOM05D006481 ORTHO05D008160 1.1e-66 259.2 677 39.7
SEGI_11188 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 1.6e-54 218.8 302 44.0
SEGI_37018 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 1.6e-54 218.8 302 44.0
CDE04G1272 Ceratophyllum demersum HOM05D006481 ORTHO05D008160 2.1e-46 191.8 349 42.7
SEGI_25924 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 2.6e-36 158.3 304 40.8
Sc14g0002570 Simmondsia chinensis HOM05D006481 ORTHO05D008160 1.3e-35 156.0 574 39.5
Pp3c18_18840 Physcomitrium patens HOM05D006481 ORTHO05D008160 1.4e-34 152.5 406 35.2
SMO196G0099 Selaginella moellendorffii HOM05D006481 ORTHO05D008160 3.9e-32 144.4 290 38.6
MD10G1102400 Malus domestica HOM05D006481 ORTHO05D008160 9.9e-28 129.8 136 56.6
SHI05066 Sapria himalayana HOM05D006481 ORTHO05D008160 3.0e-24 118.2 131 51.1
CBR_g49330 Chara braunii HOM05D006481 ORTHO05D008160 3.6e-22 111.3 202 40.1
FAN20G1292 Fragaria x ananassa HOM05D006481 ORTHO05D008160 7.6e-20 103.6 511 35.4
EL10Ac6g13964 Beta vulgaris HOM05D006481 ORTHO05D008160 2.9e-19 101.7 205 40.0
MD10G1102500 Malus domestica HOM05D006481 ORTHO05D008160 4.6e-17 94.4 146 46.6
Hma1.2p1_1361F.1_g278150 Hydrangea macrophylla HOM05D006481 ORTHO05D008160 7.6e-12 77.0 120 44.2
Duzib052G0964 Durio zibethinus HOM05D006481 ORTHO05D008160 9.9e-12 76.6 141 45.4
BcaC05g27423 Brassica carinata HOM05D006481 ORTHO05D008160 2.9e-11 75.1 47 76.6
SHI05065 Sapria himalayana HOM05D006481 ORTHO05D008160 5.1e-08 64.3 116 37.9


User provided reference genes

Program Settings