Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G57300 Arabidopsis lyrata HOM05D003735 ORTHO05D004550 4.2e-245 850.9 420 100.0
AT1G49820 Arabidopsis thaliana HOM05D003735 ORTHO05D004550 2.1e-233 812.0 421 95.7
Carub.0001s3903 Capsella rubella HOM05D003735 ORTHO05D004550 5.3e-232 807.4 418 95.5
CARHR039880 Cardamine hirsuta HOM05D003735 ORTHO05D004550 8.5e-230 800.0 420 93.6
Sp1g36700 Schrenkiella parvula HOM05D003735 ORTHO05D004550 1.0e-227 793.1 420 92.1
BolC6t35561H Brassica oleracea HOM05D003735 ORTHO05D004550 1.9e-226 788.9 420 91.4
C06p04320 Brassica napus HOM05D003735 ORTHO05D004550 4.3e-226 787.7 420 91.2
BcaC08g43148 Brassica carinata HOM05D003735 ORTHO05D004550 7.4e-226 786.9 420 91.0
A06p03780 Brassica napus HOM05D003735 ORTHO05D004550 1.6e-225 785.8 420 91.2
BraA06t23583Z Brassica rapa HOM05D003735 ORTHO05D004550 3.7e-225 784.6 420 91.0
Thhalv10011522m.g Eutrema salsugineum HOM05D003735 ORTHO05D004550 3.4e-223 778.1 420 91.4
BcaB07g33662 Brassica carinata HOM05D003735 ORTHO05D004550 3.8e-222 774.6 420 89.8
Aa31LG10G4250 Aethionema arabicum HOM05D003735 ORTHO05D004550 2.6e-215 751.9 416 87.5
THA.LOC104825376 Tarenaya hassleriana HOM05D003735 ORTHO05D004550 2.6e-207 725.3 416 84.4
Atru.chr5.2510 Acer truncatum HOM05D003735 ORTHO05D004550 3.6e-196 688.3 416 80.3
Prupe.8G136000 Prunus persica HOM05D003735 ORTHO05D004550 8.8e-195 683.7 416 79.1
Ciclev10028518m.g Citrus clementina HOM05D003735 ORTHO05D004550 1.5e-194 682.9 416 78.6
RcHm_v2.0_Chr6g0254911 Rosa chinensis HOM05D003735 ORTHO05D004550 3.4e-194 681.8 416 79.8
Thecc.02G109200 Theobroma cacao HOM05D003735 ORTHO05D004550 6.3e-193 677.6 415 78.8
Cpa.g.sc106.101 Carica papaya HOM05D003735 ORTHO05D004550 2.4e-192 675.6 416 77.9
RcHm_v2.0_Chr2g0122061 Rosa chinensis HOM05D003735 ORTHO05D004550 2.4e-192 675.6 416 79.1
EL10Ac9g22264 Beta vulgaris HOM05D003735 ORTHO05D004550 5.4e-192 674.5 415 78.3
COL.COLO4_32583 Corchorus olitorius HOM05D003735 ORTHO05D004550 1.2e-191 673.3 417 77.9
FvH4_2g05040 Fragaria vesca HOM05D003735 ORTHO05D004550 1.6e-191 672.9 416 78.6
MD10G1098700 Malus domestica HOM05D003735 ORTHO05D004550 2.7e-191 672.2 415 77.6
BcaC08g43149 Brassica carinata HOM05D003735 ORTHO05D004550 3.5e-191 671.8 420 81.2
Hund06312 Selenicereus undatus HOM05D003735 ORTHO05D004550 4.5e-191 671.4 411 78.8
MD10G1147300 Malus domestica HOM05D003735 ORTHO05D004550 1.3e-190 669.8 415 77.6
Actinidia00406 Actinidia chinensis HOM05D003735 ORTHO05D004550 2.2e-190 669.1 416 77.4
Dinv15769 Davidia involucrata HOM05D003735 ORTHO05D004550 3.8e-190 668.3 416 76.9
FAN24G3115 Fragaria x ananassa HOM05D003735 ORTHO05D004550 5.0e-190 667.9 416 77.6
Manes.07G071100 Manihot esculenta HOM05D003735 ORTHO05D004550 6.5e-190 667.5 415 76.4
CSS0013486 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 1.5e-189 666.4 415 78.3
Gohir.A12G021500 Gossypium hirsutum HOM05D003735 ORTHO05D004550 4.2e-189 664.8 417 76.7
Cfa004592 Carpinus fangiana HOM05D003735 ORTHO05D004550 9.5e-189 663.7 416 77.2
Duzib132G0856 Durio zibethinus HOM05D003735 ORTHO05D004550 9.5e-189 663.7 439 73.8
Duzib248G1182 Durio zibethinus HOM05D003735 ORTHO05D004550 9.5e-189 663.7 417 76.3
FAN27G1495 Fragaria x ananassa HOM05D003735 ORTHO05D004550 1.2e-188 663.3 432 75.7
ClCG05G010320 Citrullus lanatus HOM05D003735 ORTHO05D004550 1.6e-188 662.9 416 76.0
FAN20G1457 Fragaria x ananassa HOM05D003735 ORTHO05D004550 2.8e-188 662.1 432 75.5
GSVIVG01037915001 Vitis vinifera HOM05D003735 ORTHO05D004550 2.8e-188 662.1 418 76.8
Potri.009G094800 Populus trichocarpa HOM05D003735 ORTHO05D004550 4.7e-188 661.4 416 76.7
Eucgr.I01098 Eucalyptus grandis HOM05D003735 ORTHO05D004550 1.4e-187 659.8 420 74.8
CiPaw.05G012200 Carya illinoinensis HOM05D003735 ORTHO05D004550 1.8e-187 659.4 416 75.5
Rhsim11G0159300 Rhododendron simsii HOM05D003735 ORTHO05D004550 1.8e-187 659.4 416 76.9
PGR142G3714 Punica granatum HOM05D003735 ORTHO05D004550 4.0e-187 658.3 413 76.5
CANSAT25G2742 Cannabis sativa HOM05D003735 ORTHO05D004550 5.2e-187 657.9 417 75.1
Gohir.D12G022000 Gossypium hirsutum HOM05D003735 ORTHO05D004550 5.2e-187 657.9 417 75.8
Thecc.02G109600 Theobroma cacao HOM05D003735 ORTHO05D004550 8.8e-187 657.1 434 74.4
FAN15G3608 Fragaria x ananassa HOM05D003735 ORTHO05D004550 2.6e-186 655.6 432 75.0
Peaxi162Scf00016g02426 Petunia axillaris HOM05D003735 ORTHO05D004550 3.4e-186 655.2 416 75.7
Manes.07G071000 Manihot esculenta HOM05D003735 ORTHO05D004550 4.4e-186 654.8 416 74.5
Medtr1g107235 Medicago truncatula HOM05D003735 ORTHO05D004550 4.4e-186 654.8 415 75.9
CiPaw.05G012300 Carya illinoinensis HOM05D003735 ORTHO05D004550 5.7e-186 654.4 416 75.2
QL11p033367 Quercus lobata HOM05D003735 ORTHO05D004550 5.7e-186 654.4 416 75.7
Rhsim11G0159400 Rhododendron simsii HOM05D003735 ORTHO05D004550 7.5e-186 654.1 416 75.7
Sabra09G0073100 Salix brachista HOM05D003735 ORTHO05D004550 7.5e-186 654.1 416 76.0
Cc02_g19320 Coffea canephora HOM05D003735 ORTHO05D004550 9.8e-186 653.7 416 75.0
Gorai.008G022500 Gossypium raimondii HOM05D003735 ORTHO05D004550 1.3e-185 653.3 417 75.1
Manes.07G071116 Manihot esculenta HOM05D003735 ORTHO05D004550 1.3e-185 653.3 415 74.9
Dinv42198 Davidia involucrata HOM05D003735 ORTHO05D004550 1.7e-185 652.9 416 76.0
Phvul.007G040800 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 1.7e-185 652.9 416 74.8
Solyc01g107550.3 Solanum lycopersicum HOM05D003735 ORTHO05D004550 4.9e-185 651.4 416 75.2
MELO3C019550.2 Cucumis melo HOM05D003735 ORTHO05D004550 6.3e-185 651.0 416 74.0
Gorai.008G022400 Gossypium raimondii HOM05D003735 ORTHO05D004550 6.3e-185 651.0 417 75.3
arahy.Tifrunner.gnm1.ann1.28YLK9 Arachis hypogaea HOM05D003735 ORTHO05D004550 1.4e-184 649.8 416 75.0
arahy.Tifrunner.gnm1.ann1.SBY3PD Arachis hypogaea HOM05D003735 ORTHO05D004550 1.4e-184 649.8 416 75.0
Glyma.20G129700 Glycine max HOM05D003735 ORTHO05D004550 1.8e-184 649.4 416 75.5
Haze_10183 Corylus avellana HOM05D003735 ORTHO05D004550 2.4e-184 649.0 416 75.7
Sabra09G0072900 Salix brachista HOM05D003735 ORTHO05D004550 3.1e-184 648.7 416 75.7
Nn5g30431 Nelumbo nucifera HOM05D003735 ORTHO05D004550 4.1e-184 648.3 416 73.8
Lj9A323T50 Lonicera japonica HOM05D003735 ORTHO05D004550 7.0e-184 647.5 417 75.1
Sopen01g049750 Solanum pennellii HOM05D003735 ORTHO05D004550 7.0e-184 647.5 416 74.8
AUR62025585 Chenopodium quinoa HOM05D003735 ORTHO05D004550 1.2e-183 646.7 411 74.9
Glyma.10G261300 Glycine max HOM05D003735 ORTHO05D004550 1.2e-183 646.7 416 74.8
Potri.001G299700 Populus trichocarpa HOM05D003735 ORTHO05D004550 1.2e-183 646.7 416 75.2
Haze_10190 Corylus avellana HOM05D003735 ORTHO05D004550 2.7e-183 645.6 436 72.9
VMungo0720G1863 Vigna mungo HOM05D003735 ORTHO05D004550 2.7e-183 645.6 416 73.8
PGSC0003DMG400025861 Solanum tuberosum HOM05D003735 ORTHO05D004550 3.5e-183 645.2 416 75.0
CsaV3_3G018170 Cucumis sativus L. HOM05D003735 ORTHO05D004550 4.5e-183 644.8 416 73.1
Migut.N01162 Erythranthe guttata HOM05D003735 ORTHO05D004550 4.5e-183 644.8 417 74.8
Ca_11068_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 5.9e-183 644.4 416 74.3
Lj5g0001181 Lotus japonicus HOM05D003735 ORTHO05D004550 7.8e-183 644.0 416 74.5
CAN.G606.4 Capsicum annuum HOM05D003735 ORTHO05D004550 1.3e-182 643.3 416 74.8
Hma1.2p1_0796F.1_g219280 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 1.7e-182 642.9 416 74.5
TPR.G3239 Trifolium pratense HOM05D003735 ORTHO05D004550 2.9e-182 642.1 415 73.5
Lalb_Chr02g0145261 Lupinus albus HOM05D003735 ORTHO05D004550 5.0e-182 641.3 416 73.6
TWI75G1082 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 5.0e-182 641.3 415 74.5
SGA_v2.0_scaffold393G50713 Striga asiatica HOM05D003735 ORTHO05D004550 6.6e-182 641.0 416 72.1
GSVIVG01037913001 Vitis vinifera HOM05D003735 ORTHO05D004550 1.9e-181 639.4 418 74.4
AUR62001369 Chenopodium quinoa HOM05D003735 ORTHO05D004550 5.6e-181 637.9 411 74.2
Psat6g217600 Pisum sativum HOM05D003735 ORTHO05D004550 5.6e-181 637.9 415 73.5
AUR62039068 Chenopodium quinoa HOM05D003735 ORTHO05D004550 1.6e-180 636.3 416 73.8
Phvul.007G040700 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 2.8e-180 635.6 416 73.3
vmacro01999 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 4.7e-180 634.8 433 72.5
Nitab4.5_0011634g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 1.4e-179 633.3 430 72.1
SalBow3G2544 Salvia bowleyana HOM05D003735 ORTHO05D004550 1.4e-179 633.3 412 73.3
Prupe.7G233900 Prunus persica HOM05D003735 ORTHO05D004550 2.3e-179 632.5 415 72.8
TWI79G0069 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 5.2e-179 631.3 415 72.5
MSTRG.5338 Avicennia marina HOM05D003735 ORTHO05D004550 1.5e-178 629.8 416 72.8
arahy.Tifrunner.gnm1.ann1.HR3ZI9 Arachis hypogaea HOM05D003735 ORTHO05D004550 2.6e-178 629.0 416 71.9
MD10G1098200 Malus domestica HOM05D003735 ORTHO05D004550 4.4e-178 628.2 420 72.9
Oeu029527.5 Olea europaea HOM05D003735 ORTHO05D004550 8.3e-177 624.0 456 68.0
Psat6g217400 Pisum sativum HOM05D003735 ORTHO05D004550 8.3e-177 624.0 414 71.5
Ca_11064_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 1.8e-176 622.9 416 71.2
DCAR_021982 Daucus carota HOM05D003735 ORTHO05D004550 3.2e-176 622.1 416 73.6
CDE02G0578 Ceratophyllum demersum HOM05D003735 ORTHO05D004550 1.2e-175 620.2 419 70.6
unitig_747.g21222 Utricularia gibba HOM05D003735 ORTHO05D004550 1.2e-175 620.2 418 69.9
Zm00001eb433310 Zea mays HOM05D003735 ORTHO05D004550 7.8e-175 617.5 413 69.7
MBI16_g19654_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D004550 1.3e-174 616.7 404 74.3
HanXRQChr10g0296961 Helianthus annuus HOM05D003735 ORTHO05D004550 1.7e-174 616.3 413 70.7
HPP92_011617 Vanilla planifolia HOM05D003735 ORTHO05D004550 1.7e-174 616.3 412 71.4
Gohir.D12G022100 Gossypium hirsutum HOM05D003735 ORTHO05D004550 5.0e-174 614.8 417 71.7
Os04g0669800 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 6.6e-174 614.4 412 70.1
Lsat_1_v5_gn_5_115400 Lactuca sativa HOM05D003735 ORTHO05D004550 1.2e-172 610.1 413 70.2
arahy.Tifrunner.gnm1.ann1.678ZZJ Arachis hypogaea HOM05D003735 ORTHO05D004550 1.6e-172 609.8 449 66.8
MSTRG.27746 Avicennia marina HOM05D003735 ORTHO05D004550 1.6e-172 609.8 416 69.7
PSO675G8377 Papaver somniferum HOM05D003735 ORTHO05D004550 8.0e-172 607.4 416 71.6
Ah.01g018310 Amaranthus hybridus HOM05D003735 ORTHO05D004550 1.4e-171 606.7 415 71.6
ECA234G0132 Erigeron canadensis HOM05D003735 ORTHO05D004550 4.0e-171 605.1 417 68.6
Os04g0669900 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 7.5e-170 600.9 413 69.2
CSS0020963 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 6.4e-169 597.8 415 72.0
Lalb_Chr09g0319561 Lupinus albus HOM05D003735 ORTHO05D004550 3.2e-168 595.5 419 68.7
PSO541G1406 Papaver somniferum HOM05D003735 ORTHO05D004550 4.1e-168 595.1 416 71.2
Oeu013756.1 Olea europaea HOM05D003735 ORTHO05D004550 5.4e-168 594.7 499 60.5
ATR0589G073 Amborella trichopoda HOM05D003735 ORTHO05D004550 7.0e-168 594.3 411 69.6
RcHm_v2.0_Chr6g0254921 Rosa chinensis HOM05D003735 ORTHO05D004550 1.0e-166 590.5 364 77.2
CSS0002879 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 1.3e-166 590.1 356 79.2
TPR.G19078 Trifolium pratense HOM05D003735 ORTHO05D004550 1.9e-165 586.3 421 67.9
Sed0001414 Sechium edule HOM05D003735 ORTHO05D004550 1.8e-163 579.7 358 76.0
ECA232G2787 Erigeron canadensis HOM05D003735 ORTHO05D004550 5.8e-162 574.7 416 64.4
VMungo1215G1247 Vigna mungo HOM05D003735 ORTHO05D004550 5.8e-162 574.7 420 65.2
Lj9C323T5 Lonicera japonica HOM05D003735 ORTHO05D004550 7.1e-160 567.8 367 73.3
SMO340G0152 Selaginella moellendorffii HOM05D003735 ORTHO05D004550 2.2e-153 546.2 412 62.4
Eucgr.I01100 Eucalyptus grandis HOM05D003735 ORTHO05D004550 2.4e-152 542.7 344 74.1
TPR.G3238 Trifolium pratense HOM05D003735 ORTHO05D004550 9.6e-149 530.8 340 73.2
Pp3c6_19060 Physcomitrium patens HOM05D003735 ORTHO05D004550 2.1e-148 529.6 415 59.8
Mapoly0029s0020 Marchantia polymorpha HOM05D003735 ORTHO05D004550 2.2e-145 519.6 414 58.9
AagrBONN_evm.TU.Sc2ySwM_344.2850 Anthoceros agrestis HOM05D003735 ORTHO05D004550 9.3e-144 514.2 416 59.1
vmacro01998 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 1.1e-136 490.7 433 60.3
DCAR_001652 Daucus carota HOM05D003735 ORTHO05D004550 5.4e-136 488.4 415 60.0
CBR_g23696 Chara braunii HOM05D003735 ORTHO05D004550 1.9e-133 479.9 431 53.1
Cfa004590 Carpinus fangiana HOM05D003735 ORTHO05D004550 1.4e-128 463.8 302 74.5
AUR62010319 Chenopodium quinoa HOM05D003735 ORTHO05D004550 3.0e-126 456.1 341 65.1
arahy.Tifrunner.gnm1.ann1.TAI6X1 Arachis hypogaea HOM05D003735 ORTHO05D004550 1.1e-115 421.0 315 66.3
QL11p033306 Quercus lobata HOM05D003735 ORTHO05D004550 7.9e-111 404.8 302 68.5
Peaxi162Scf00152g00332 Petunia axillaris HOM05D003735 ORTHO05D004550 2.8e-108 396.4 292 67.5
CBR_g12222 Chara braunii HOM05D003735 ORTHO05D004550 6.9e-107 391.7 510 41.8
QL11p033359 Quercus lobata HOM05D003735 ORTHO05D004550 6.9e-107 391.7 222 80.6
Cre16.g673550 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D007494 4.8e-100 369.0 415 45.5
MCO11G261 Micromonas commoda HOM05D003735 ORTHO05D007494 3.1e-99 366.3 421 45.6
PRCOL_00000373 Prasinoderma coloniale HOM05D003735 ORTHO05D006943 1.2e-98 364.4 406 46.1
arahy.Tifrunner.gnm1.ann1.Z6IW8Q Arachis hypogaea HOM05D003735 ORTHO05D004550 1.7e-92 344.0 235 70.2
Glyma.01G244200 Glycine max HOM05D003735 ORTHO05D004550 2.2e-92 343.6 244 65.2
Nitab4.5_0026736g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 5.2e-86 322.4 198 74.2
Nitab4.5_0001143g0070 Nicotiana tabacum HOM05D003735 ORTHO05D004550 2.0e-85 320.5 198 73.7
Cc02_g18410 Coffea canephora HOM05D003735 ORTHO05D004550 1.0e-73 281.6 220 64.1
arahy.Tifrunner.gnm1.ann1.83SMNU Arachis hypogaea HOM05D003735 ORTHO05D004550 1.0e-70 271.6 216 65.7
ATR0589G120 Amborella trichopoda HOM05D003735 ORTHO05D004550 6.1e-63 245.7 162 72.8
Cc01_g17410 Coffea canephora HOM05D003735 ORTHO05D004550 1.0e-62 245.0 173 68.2
Hma1.2p1_1023F.1_g249070 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 2.2e-60 237.3 258 50.8
Ciclev10029480m.g Citrus clementina HOM05D003735 ORTHO05D004550 4.1e-59 233.0 179 64.2
arahy.Tifrunner.gnm1.ann1.B546P6 Arachis hypogaea HOM05D003735 ORTHO05D004550 6.6e-57 225.7 151 72.2
Peaxi162Scf00152g00233 Petunia axillaris HOM05D003735 ORTHO05D004550 2.3e-54 217.2 229 50.7
Glyma.01G244132 Glycine max HOM05D003735 ORTHO05D004550 1.3e-52 211.5 154 67.5
Gorai.013G047300 Gossypium raimondii HOM05D003735 ORTHO05D004550 3.7e-52 209.9 186 57.5
ATR0589G125 Amborella trichopoda HOM05D003735 ORTHO05D004550 4.6e-50 203.0 117 79.5
Gohir.A13G043900 Gossypium hirsutum HOM05D003735 ORTHO05D004550 1.3e-49 201.4 333 38.7
Nitab4.5_0001143g0030 Nicotiana tabacum HOM05D003735 ORTHO05D004550 1.5e-45 188.0 121 68.6
Gohir.D13G042333 Gossypium hirsutum HOM05D003735 ORTHO05D004550 3.4e-45 186.8 339 38.1
QL11p033356 Quercus lobata HOM05D003735 ORTHO05D004550 7.1e-43 179.1 123 71.5
Aqoxy6G02845 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 5.1e-41 172.9 123 67.5
ATR0589G028 Amborella trichopoda HOM05D003735 ORTHO05D004550 1.7e-33 147.9 123 56.1
TAR376G0098 Trochodendron aralioides HOM05D003735 ORTHO05D004550 5.1e-33 146.4 101 69.3
Gorai.013G047400 Gossypium raimondii HOM05D003735 ORTHO05D004550 4.6e-26 123.2 122 55.7
MBI14_g39937_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D022889 5.1e-25 119.8 66 77.3
Nn4g25342 Nelumbo nucifera HOM05D003735 ORTHO05D004550 5.6e-24 116.3 70 75.7
TPR.G20408 Trifolium pratense HOM05D003735 ORTHO05D004550 7.3e-24 115.9 85 69.4
Aqoxy6G02846 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 2.6e-13 80.9 63 65.1
TPR.G31649 Trifolium pratense HOM05D000067 ORTHO05D000097 4.2e-11 73.6 83 42.2
ATR0589G078 Amborella trichopoda HOM05D003735 ORTHO05D004550 1.6e-10 71.6 59 64.4
TPR.G13570 Trifolium pratense HOM05D003735 ORTHO05D004354 2.1e-10 71.2 83 42.2
BcaC08g43052 Brassica carinata HOM05D003735 ORTHO05D004550 5.1e-09 66.6 43 76.7
Cre07.g342900 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D146703 3.1e-06 57.4 295 20.7
Sabra16G0188100 Salix brachista HOM05D003735 ORTHO05D349252 3.1e-06 57.4 35 65.7


User provided reference genes

Program Settings