Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G56310 Arabidopsis lyrata HOM05D005911 ORTHO05D007565 2.2e-213 745.3 379 100.0
AT1G49350 Arabidopsis thaliana HOM05D005911 ORTHO05D007565 8.8e-194 680.2 379 92.1
Sp1g36210 Schrenkiella parvula HOM05D005911 ORTHO05D007565 3.4e-185 651.7 379 87.3
Carub.0001s3853 Capsella rubella HOM05D005911 ORTHO05D007565 2.4e-183 645.6 379 86.3
Thhalv10011559m.g Eutrema salsugineum HOM05D005911 ORTHO05D007565 9.1e-183 643.7 380 86.8
BcaB02g11057 Brassica carinata HOM05D005911 ORTHO05D007565 8.0e-179 630.6 379 83.4
BraA05t20973Z Brassica rapa HOM05D005911 ORTHO05D007565 8.6e-173 610.5 378 81.7
BcaC05g27521 Brassica carinata HOM05D005911 ORTHO05D007565 9.5e-172 607.1 378 81.5
C05p34650 Brassica napus HOM05D005911 ORTHO05D007565 6.1e-171 604.4 378 81.2
BolC5t32220H Brassica oleracea HOM05D005911 ORTHO05D007565 2.3e-170 602.4 378 80.7
A05p20650 Brassica napus HOM05D005911 ORTHO05D007565 4.0e-170 601.7 378 81.5
BcaC05g27500 Brassica carinata HOM05D005911 ORTHO05D007565 7.5e-169 597.4 378 80.4
Aa31LG10G4600 Aethionema arabicum HOM05D005713 ORTHO05D007751 2.0e-166 589.3 378 79.1
BolC5t32198H Brassica oleracea HOM05D005911 ORTHO05D007565 2.7e-158 562.4 400 74.2
THA.LOC104804910 Tarenaya hassleriana HOM05D005911 ORTHO05D007565 8.3e-152 540.8 379 72.0
C05p34970 Brassica napus HOM05D005911 ORTHO05D007565 1.3e-144 516.9 325 80.6
AL1G56510 Arabidopsis lyrata HOM05D003089 ORTHO05D003544 1.0e-141 507.3 350 77.7
Ca_18760_v3 Cicer arietinum L. HOM05D005911 ORTHO05D007565 1.2e-113 414.1 387 56.6
MD10G1080400 Malus domestica HOM05D005911 ORTHO05D007565 2.6e-113 412.9 387 55.8
Phvul.007G233200 Phaseolus vulgaris HOM05D005911 ORTHO05D007565 3.4e-113 412.5 386 55.7
Prupe.8G101700 Prunus persica HOM05D005911 ORTHO05D007565 1.7e-112 410.2 384 55.5
arahy.Tifrunner.gnm1.ann1.CA4G6V Arachis hypogaea HOM05D005911 ORTHO05D007565 2.2e-112 409.8 386 56.7
Gohir.D04G144200 Gossypium hirsutum HOM05D005911 ORTHO05D007565 4.9e-112 408.7 384 54.9
Lalb_Chr16g0385211 Lupinus albus HOM05D005911 ORTHO05D007565 1.1e-111 407.5 387 55.3
Gorai.012G129800 Gossypium raimondii HOM05D005911 ORTHO05D007565 1.4e-111 407.1 384 54.7
TPR.G20990 Trifolium pratense HOM05D005911 ORTHO05D007565 3.2e-111 406.0 387 56.3
Atru.chr5.2957 Acer truncatum HOM05D005911 ORTHO05D007565 1.2e-110 404.1 383 55.9
CiPaw.06G137300 Carya illinoinensis HOM05D005911 ORTHO05D007565 3.5e-110 402.5 376 55.1
Dinv42087 Davidia involucrata HOM05D005911 ORTHO05D007565 3.5e-110 402.5 386 56.2
Lj4g0018405 Lotus japonicus HOM05D005911 ORTHO05D007565 1.0e-109 401.0 387 54.5
Medtr4g084100 Medicago truncatula HOM05D005911 ORTHO05D007565 5.1e-109 398.7 390 55.9
Potri.004G152100 Populus trichocarpa HOM05D005911 ORTHO05D007565 5.1e-109 398.7 385 54.5
Cfa005027 Carpinus fangiana HOM05D005911 ORTHO05D007565 8.7e-109 397.9 383 54.6
QL11p042848 Quercus lobata HOM05D005911 ORTHO05D007565 1.1e-108 397.5 383 55.1
DCAR_003638 Daucus carota HOM05D005911 ORTHO05D007565 1.9e-108 396.7 387 51.9
VMungo0720G1659 Vigna mungo HOM05D005911 ORTHO05D007565 7.4e-108 394.8 417 51.6
Glyma.20G019800 Glycine max HOM05D005911 ORTHO05D007565 9.7e-108 394.4 386 54.7
TWI31G0066 Tripterygium wilfordii HOM05D005911 ORTHO05D007565 1.6e-107 393.7 386 56.0
GSVIVG01024153001 Vitis vinifera HOM05D005911 ORTHO05D007565 3.7e-107 392.5 387 52.7
Duzib248G0238 Durio zibethinus HOM05D005911 ORTHO05D007565 4.8e-107 392.1 377 54.1
Actinidia17824 Actinidia chinensis HOM05D005911 ORTHO05D007565 6.3e-107 391.7 387 53.5
Sed0023974 Sechium edule HOM05D005911 ORTHO05D007565 3.1e-106 389.4 379 50.4
CAN.G322.116 Capsicum annuum HOM05D005911 ORTHO05D007565 4.1e-106 389.0 386 53.4
Cpa.g.sc62.118 Carica papaya HOM05D005911 ORTHO05D007565 4.1e-106 389.0 386 54.7
Solyc01g109450.3 Solanum lycopersicum HOM05D005911 ORTHO05D007565 6.9e-106 388.3 386 52.8
Sopen01g051640 Solanum pennellii HOM05D005911 ORTHO05D007565 6.9e-106 388.3 386 52.6
Manes.17G099400 Manihot esculenta HOM05D005911 ORTHO05D007565 1.5e-105 387.1 385 53.2
Rhsim05G0076000 Rhododendron simsii HOM05D005911 ORTHO05D007565 1.5e-105 387.1 389 54.2
TAR628G1003 Trochodendron aralioides HOM05D005911 ORTHO05D007565 1.5e-105 387.1 385 54.3
CSS0013374 Camellia sinensis var. sinensis HOM05D005911 ORTHO05D007565 2.0e-105 386.7 387 52.7
MBI16_g17455_MAGBIO Magnolia biondii HOM05D005911 ORTHO05D007565 3.4e-105 386.0 381 53.3
PGSC0003DMG400025190 Solanum tuberosum HOM05D005911 ORTHO05D007565 5.9e-105 385.2 386 52.1
Thecc.02G123100 Theobroma cacao HOM05D005911 ORTHO05D007565 7.6e-105 384.8 385 52.5
RcHm_v2.0_Chr6g0263461 Rosa chinensis HOM05D005911 ORTHO05D007565 2.9e-104 382.9 387 53.7
COL.COLO4_32449 Corchorus olitorius HOM05D005911 ORTHO05D007565 3.8e-104 382.5 362 54.1
Peaxi162Scf00016g00941 Petunia axillaris HOM05D005911 ORTHO05D007565 6.5e-104 381.7 388 52.6
Nn1g05068 Nelumbo nucifera HOM05D005911 ORTHO05D007565 1.4e-103 380.6 379 53.6
Psat3g133040 Pisum sativum HOM05D005911 ORTHO05D007565 1.4e-103 380.6 358 55.9
PGR042G3082 Punica granatum HOM05D005911 ORTHO05D009502 1.4e-103 380.6 380 53.2
CsaV3_7G023300 Cucumis sativus L. HOM05D005911 ORTHO05D007565 2.5e-103 379.8 379 49.9
ClCG02G005220 Citrullus lanatus HOM05D005911 ORTHO05D007565 3.2e-103 379.4 378 49.7
FvH4_2g08380 Fragaria vesca HOM05D005911 ORTHO05D007565 7.2e-103 378.3 387 51.2
FAN24G3462 Fragaria x ananassa HOM05D005911 ORTHO05D007565 1.2e-102 377.5 387 51.2
Nitab4.5_0001794g0010 Nicotiana tabacum HOM05D005911 ORTHO05D007565 1.2e-102 377.5 386 51.6
Nitab4.5_0008989g0030 Nicotiana tabacum HOM05D005911 ORTHO05D007565 1.6e-102 377.1 389 52.4
MSTRG.20102 Avicennia marina HOM05D005911 ORTHO05D007565 1.7e-99 367.1 382 50.8
Aqoxy5G01675 Aquilegia oxysepala HOM05D005911 ORTHO05D007565 2.2e-99 366.7 380 51.3
ECA236G0345 Erigeron canadensis HOM05D005911 ORTHO05D007565 2.8e-99 366.3 382 51.0
HanXRQChr16g0504971 Helianthus annuus HOM05D005911 ORTHO05D007565 2.4e-98 363.2 380 51.6
SalBow3G0191 Salvia bowleyana HOM05D005911 ORTHO05D007565 3.1e-98 362.8 382 49.5
Cc02_g17800 Coffea canephora HOM05D005911 ORTHO05D007565 9.1e-98 361.3 397 49.9
AUR62011353 Chenopodium quinoa HOM05D005911 ORTHO05D007565 1.5e-97 360.5 383 49.3
Migut.N01227 Erythranthe guttata HOM05D005911 ORTHO05D007565 2.6e-97 359.8 386 49.5
CARHR039360 Cardamine hirsuta HOM05D005911 ORTHO05D007565 5.9e-97 358.6 248 76.6
AUR62016709 Chenopodium quinoa HOM05D005911 ORTHO05D007565 5.9e-97 358.6 383 49.1
Oeu014335.1 Olea europaea HOM05D005911 ORTHO05D007565 1.7e-96 357.1 378 51.1
Hund00288 Selenicereus undatus HOM05D005911 ORTHO05D007565 6.5e-96 355.1 378 48.9
MELO3C012560.2 Cucumis melo HOM05D005911 ORTHO05D007565 1.1e-95 354.4 395 46.6
FAN20G0571 Fragaria x ananassa HOM05D005911 ORTHO05D007565 1.9e-95 353.6 365 50.7
EL10Ac9g21750 Beta vulgaris HOM05D005911 ORTHO05D007565 3.2e-95 352.8 385 47.8
ATR0733G150 Amborella trichopoda HOM05D005911 ORTHO05D007565 4.2e-95 352.4 381 51.2
FAN15G1485 Fragaria x ananassa HOM05D005911 ORTHO05D007565 5.5e-95 352.1 362 51.7
vmacro19435 Vaccinium macrocarpon HOM05D005911 ORTHO05D007565 7.2e-95 351.7 394 48.2
Sabra04G0100900 Salix brachista HOM05D005911 ORTHO05D007565 1.0e-93 347.8 410 48.0
Gohir.A04G104400 Gossypium hirsutum HOM05D005911 ORTHO05D007565 3.0e-93 346.3 384 49.5
SGA_v2.0_scaffold44G16630 Striga asiatica HOM05D005911 ORTHO05D007565 9.1e-90 334.7 364 49.7
Hma1.2p1_0066F.1_g036670 Hydrangea macrophylla HOM05D005911 ORTHO05D007565 1.7e-88 330.5 323 53.9
Haze_02358 Corylus avellana HOM05D005911 ORTHO05D009502 2.9e-88 329.7 404 46.3
Nitab4.5_0000443g0010 Nicotiana tabacum HOM05D005911 ORTHO05D007565 5.0e-88 328.9 382 49.0
Os05g0185700 Oryza sativa ssp. japonica HOM05D005911 ORTHO05D007565 6.5e-88 328.6 376 47.1
Lsat_1_v5_gn_7_89660 Lactuca sativa HOM05D005911 ORTHO05D007565 1.0e-85 321.2 376 50.5
Eucgr.G01900 Eucalyptus grandis HOM05D005911 ORTHO05D007565 4.4e-84 315.8 334 52.1
Ciclev10029888m.g Citrus clementina HOM05D005911 ORTHO05D007565 5.7e-84 315.5 309 52.4
Eucgr.G00462 Eucalyptus grandis HOM05D005911 ORTHO05D007565 9.7e-84 314.7 337 51.3
SEGI_31956 Sequoiadendron giganteum HOM05D005911 ORTHO05D007565 1.4e-82 310.8 373 46.9
CAN.G149.23 Capsicum annuum HOM05D005911 ORTHO05D007565 5.3e-82 308.9 383 44.6
Sc14g0001790 Simmondsia chinensis HOM05D005911 ORTHO05D007565 9.1e-82 308.1 377 44.6
Potri.004G151600 Populus trichocarpa HOM05D005911 ORTHO05D007565 1.8e-77 293.9 286 52.8
Lj9A367G52 Lonicera japonica HOM05D005911 ORTHO05D007565 3.3e-76 289.7 283 52.7
CARHR039340 Cardamine hirsuta HOM05D005911 ORTHO05D007565 2.4e-74 283.5 191 77.5
A05p20720 Brassica napus HOM05D005911 ORTHO05D007565 4.7e-70 269.2 181 75.7
BraA05t20979Z Brassica rapa HOM05D005911 ORTHO05D007565 4.7e-70 269.2 181 75.7
unitig_22.g6840 Utricularia gibba HOM05D005911 ORTHO05D007565 6.3e-67 258.8 365 41.9
CDE02G3889 Ceratophyllum demersum HOM05D005911 ORTHO05D007565 9.1e-66 255.0 355 42.5
Zm00001eb346550 Zea mays HOM05D005911 ORTHO05D007565 7.7e-65 251.9 312 44.6
AagrBONN_evm.TU.Sc2ySwM_117.291 Anthoceros agrestis HOM05D005911 ORTHO05D007565 5.0e-64 249.2 350 42.3
Pp3c15_14160 Physcomitrium patens HOM05D005911 ORTHO05D007565 2.5e-63 246.9 382 39.8
Sc14g0001910 Simmondsia chinensis HOM05D005911 ORTHO05D007565 4.2e-63 246.1 312 43.9
FAN27G2671 Fragaria x ananassa HOM05D005911 ORTHO05D007565 1.1e-58 231.5 381 37.3
CBR_g27891 Chara braunii HOM05D005911 ORTHO05D007565 3.8e-56 223.0 398 36.7
CARHR039370 Cardamine hirsuta HOM05D005911 ORTHO05D007565 3.6e-46 189.9 126 77.0
Mapoly0044s0080 Marchantia polymorpha HOM05D005911 ORTHO05D007565 4.7e-46 189.5 328 36.9
SGA_v2.0_scaffold55G19804 Striga asiatica HOM05D005911 ORTHO05D007565 1.1e-42 178.3 205 46.3
Ah.01g006180 Amaranthus hybridus HOM05D002934 ORTHO05D003937 2.0e-36 157.5 187 46.0
Gorai.008G153200 Gossypium raimondii HOM05D005911 ORTHO05D007565 8.3e-35 152.1 148 52.7
Eucgr.G01892 Eucalyptus grandis HOM05D005911 ORTHO05D007565 1.2e-33 148.3 173 50.3
MCO11G507 Micromonas commoda HOM05D005911 ORTHO05D007565 3.6e-30 136.7 370 31.4
PRCOL_00000481 Prasinoderma coloniale HOM05D005911 ORTHO05D007565 3.6e-30 136.7 328 32.0
Cre17.g701100 Chlamydomonas reinhardtii HOM05D005911 ORTHO05D007565 3.1e-29 133.7 197 43.7
Eucgr.G00468 Eucalyptus grandis HOM05D005911 ORTHO05D007565 3.9e-24 116.7 152 42.1
AagrBONN_evm.TU.Sc2ySwM_228.5516 Anthoceros agrestis HOM05D005911 ORTHO05D007565 2.5e-23 114.0 118 49.2
Nitab4.5_0000776g0050 Nicotiana tabacum HOM05D005911 ORTHO05D007565 5.8e-20 102.8 111 46.8
TAR371G0586 Trochodendron aralioides HOM05D005911 ORTHO05D007565 1.2e-17 95.1 159 39.6
arahy.Tifrunner.gnm1.ann1.IUSJ9T Arachis hypogaea HOM05D005911 ORTHO05D007565 2.7e-17 94.0 71 64.8
Ciclev10013569m.g Citrus clementina HOM05D005911 ORTHO05D007565 2.4e-13 80.9 73 54.8
TAR371G0927 Trochodendron aralioides HOM05D005911 ORTHO05D007565 2.4e-13 80.9 82 53.7
Lj9A367G53 Lonicera japonica HOM05D005911 ORTHO05D007565 1.2e-12 78.6 71 52.1
Ciclev10003801m.g Citrus clementina HOM05D005911 ORTHO05D007565 6.4e-11 72.8 61 57.4
Ciclev10018182m.g Citrus clementina HOM05D005911 ORTHO05D007565 5.4e-10 69.7 61 54.1
Sc14g0001900 Simmondsia chinensis HOM05D005911 ORTHO05D007565 4.6e-09 66.6 59 52.5
Gohir.D04G144225 Gossypium hirsutum HOM05D005911 ORTHO05D007565 6.7e-08 62.8 66 47.0
Gorai.012G129900 Gossypium raimondii HOM05D005911 ORTHO05D007565 6.7e-08 62.8 66 47.0


User provided reference genes

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