Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G55640 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 3.0e-131 471.9 237 100.0
AL3G52130 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 1.5e-127 459.5 232 99.1
AL2G23180 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 6.9e-112 407.5 230 92.2
AT5G41880 Arabidopsis thaliana HOM05D004439 ORTHO05D005670 1.0e-70 270.8 255 63.1
Carub.0007s3348 Capsella rubella HOM05D004439 ORTHO05D005670 1.9e-69 266.5 255 63.1
AL7G47340 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 7.2e-69 264.6 255 62.0
CARHR212680 Cardamine hirsuta HOM05D004439 ORTHO05D005670 4.8e-65 251.9 256 60.2
A04p15000 Brassica napus HOM05D004439 ORTHO05D005670 1.6e-63 246.9 256 59.0
BraA04t17145Z Brassica rapa HOM05D004439 ORTHO05D005670 1.6e-63 246.9 256 59.0
BcaC02g08908 Brassica carinata HOM05D004439 ORTHO05D005670 3.5e-63 245.7 256 59.0
C04p49290 Brassica napus HOM05D004439 ORTHO05D005670 3.5e-63 245.7 256 59.0
BolC4t26514H Brassica oleracea HOM05D004439 ORTHO05D005670 3.5e-63 245.7 256 59.0
Thhalv10027750m.g Eutrema salsugineum HOM05D004439 ORTHO05D005670 1.0e-62 244.2 255 58.8
BcaB06g27677 Brassica carinata HOM05D004439 ORTHO05D005670 3.8e-62 242.3 256 58.6
Sp7g00230 Schrenkiella parvula HOM05D004439 ORTHO05D005670 1.6e-60 236.9 255 56.9
BcaB02g07872 Brassica carinata HOM05D004439 ORTHO05D005670 3.6e-60 235.7 257 58.0
THA.LOC104809335 Tarenaya hassleriana HOM05D004439 ORTHO05D005670 2.2e-57 226.5 240 57.1
C06p20300 Brassica napus HOM05D004439 ORTHO05D005670 1.1e-56 224.2 258 56.6
A07p20990 Brassica napus HOM05D004439 ORTHO05D005670 7.0e-56 221.5 260 55.0
BcaC08g44563 Brassica carinata HOM05D004439 ORTHO05D005670 4.5e-55 218.8 258 55.0
BcaNung06856 Brassica carinata HOM05D004439 ORTHO05D005670 8.0e-52 208.0 259 52.9
Aa31LG9G280 Aethionema arabicum HOM05D004439 ORTHO05D005670 2.8e-49 199.5 229 53.3
Manes.11G128600 Manihot esculenta HOM05D004439 ORTHO05D005670 1.4e-48 197.2 239 49.8
Cpa.g.sc79.44 Carica papaya HOM05D004439 ORTHO05D005670 2.0e-47 193.4 242 50.0
CANSAT21G0267 Cannabis sativa HOM05D004439 ORTHO05D005670 1.0e-46 191.0 239 48.1
Thecc.03G296500 Theobroma cacao HOM05D004439 ORTHO05D005670 1.6e-44 183.7 238 47.9
AL1G44430 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 2.1e-44 183.3 90 100.0
RcHm_v2.0_Chr7g0195041 Rosa chinensis HOM05D004439 ORTHO05D005670 6.1e-44 181.8 242 47.1
MBI07_g27257_MAGBIO Magnolia biondii HOM05D004439 ORTHO05D005670 8.0e-44 181.4 239 48.1
CiPaw.11G122200 Carya illinoinensis HOM05D004439 ORTHO05D005670 1.0e-43 181.0 239 47.7
TAR629G1063 Trochodendron aralioides HOM05D004439 ORTHO05D005670 1.0e-43 181.0 239 47.3
GSVIVG01019518001 Vitis vinifera HOM05D004439 ORTHO05D005670 1.4e-43 180.6 239 47.3
AUR62010830 Chenopodium quinoa HOM05D004439 ORTHO05D005670 1.8e-43 180.3 216 50.5
Duzib205G1996 Durio zibethinus HOM05D004439 ORTHO05D005670 1.8e-43 180.3 239 46.9
Dinv38840 Davidia involucrata HOM05D004439 ORTHO05D005670 2.3e-43 179.9 255 45.9
EL10Ac5g12905 Beta vulgaris HOM05D004439 ORTHO05D005670 3.1e-43 179.5 239 47.7
CSS0017274 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 3.1e-43 179.5 255 43.9
CSS0021285 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 3.1e-43 179.5 255 43.9
COL.COLO4_10686 Corchorus olitorius HOM05D004439 ORTHO05D005670 3.1e-43 179.5 251 46.2
Cfa023584 Carpinus fangiana HOM05D004439 ORTHO05D005670 4.0e-43 179.1 239 47.3
Duzib084G1213 Durio zibethinus HOM05D004439 ORTHO05D005670 5.2e-43 178.7 239 47.3
Ciclev10020115m.g Citrus clementina HOM05D004439 ORTHO05D005670 2.0e-42 176.8 239 46.9
Hund11394 Selenicereus undatus HOM05D004439 ORTHO05D005670 2.0e-42 176.8 271 43.5
vmacro13901 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 2.6e-42 176.4 255 44.3
Atru.chr9.2010 Acer truncatum HOM05D004439 ORTHO05D005670 4.4e-42 175.6 239 47.7
arahy.Tifrunner.gnm1.ann1.FA9VAL Arachis hypogaea HOM05D004439 ORTHO05D005670 4.4e-42 175.6 237 45.6
arahy.Tifrunner.gnm1.ann1.URL0E3 Arachis hypogaea HOM05D004439 ORTHO05D005670 4.4e-42 175.6 237 45.6
arahy.Tifrunner.gnm1.ann1.X9M6Z3 Arachis hypogaea HOM05D004439 ORTHO05D005670 4.4e-42 175.6 237 45.6
Prupe.5G117700 Prunus persica HOM05D004439 ORTHO05D005670 4.4e-42 175.6 241 46.1
TWI81G0104 Tripterygium wilfordii HOM05D004439 ORTHO05D005670 4.4e-42 175.6 239 46.9
FvH4_5g04460 Fragaria vesca HOM05D004439 ORTHO05D005670 9.8e-42 174.5 239 47.3
Lj1g0018659 Lotus japonicus HOM05D004439 ORTHO05D005670 1.3e-41 174.1 239 45.6
Nn2g14269 Nelumbo nucifera HOM05D004439 ORTHO05D005670 1.3e-41 174.1 239 45.2
RcHm_v2.0_Chr6g0245391 Rosa chinensis HOM05D004439 ORTHO05D005670 1.3e-41 174.1 182 54.9
Eucgr.E00854 Eucalyptus grandis HOM05D004439 ORTHO05D005670 2.2e-41 173.3 256 42.6
Gohir.D12G237200 Gossypium hirsutum HOM05D004439 ORTHO05D005670 2.2e-41 173.3 239 45.6
Glyma.02G286600 Glycine max HOM05D004439 ORTHO05D005670 2.9e-41 172.9 239 46.0
Psat5g147560 Pisum sativum HOM05D004439 ORTHO05D005670 2.9e-41 172.9 237 46.0
VMungo0647G0731 Vigna mungo HOM05D004439 ORTHO05D005670 3.7e-41 172.6 239 46.9
Ca_15083_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 6.4e-41 171.8 239 45.6
FAN13G1146 Fragaria x ananassa HOM05D004439 ORTHO05D005670 6.4e-41 171.8 242 46.7
Phvul.009G207100 Phaseolus vulgaris HOM05D004439 ORTHO05D005670 8.3e-41 171.4 239 45.6
QL02p030851 Quercus lobata HOM05D004439 ORTHO05D005670 1.1e-40 171.0 239 44.8
Glyma.14G028200 Glycine max HOM05D004439 ORTHO05D005670 1.4e-40 170.6 239 45.6
arahy.Tifrunner.gnm1.ann1.B833UN Arachis hypogaea HOM05D004439 ORTHO05D005670 1.9e-40 170.2 237 44.7
Medtr3g062490 Medicago truncatula HOM05D004439 ORTHO05D005670 2.4e-40 169.9 239 45.2
Potri.003G104700 Populus trichocarpa HOM05D004439 ORTHO05D005670 2.4e-40 169.9 239 46.0
CsaV3_5G039570 Cucumis sativus L. HOM05D004439 ORTHO05D005670 3.2e-40 169.5 240 45.0
Gorai.008G253800 Gossypium raimondii HOM05D004439 ORTHO05D005670 4.1e-40 169.1 239 44.8
Migut.A00663 Erythranthe guttata HOM05D004439 ORTHO05D005670 7.0e-40 168.3 255 43.9
MD06G1105400 Malus domestica HOM05D004439 ORTHO05D005670 1.2e-39 167.5 241 44.8
Zm00001eb346380 Zea mays HOM05D004439 ORTHO05D005670 1.6e-39 167.2 238 44.5
Lalb_Chr16g0376971 Lupinus albus HOM05D004439 ORTHO05D005670 2.0e-39 166.8 239 43.9
Ca_15072_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 2.7e-39 166.4 239 44.4
Rhsim07G0082800 Rhododendron simsii HOM05D004439 ORTHO05D005670 2.7e-39 166.4 256 42.2
Sabra03G0071700 Salix brachista HOM05D004439 ORTHO05D005670 2.7e-39 166.4 239 45.6
vmacro05785 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 7.8e-39 164.9 265 41.9
Aqoxy5G04196 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 2.3e-38 163.3 250 42.8
DCAR_006321 Daucus carota HOM05D004439 ORTHO05D005670 2.3e-38 163.3 255 43.1
Sed0005226 Sechium edule HOM05D004439 ORTHO05D005670 2.3e-38 163.3 239 43.9
FAN18G4375 Fragaria x ananassa HOM05D004439 ORTHO05D005670 3.0e-38 162.9 260 43.5
AUR62019828 Chenopodium quinoa HOM05D004439 ORTHO05D005670 3.9e-38 162.5 240 44.2
CDE02G4298 Ceratophyllum demersum HOM05D004439 ORTHO05D005670 6.6e-38 161.8 235 43.8
Cc08_g15970 Coffea canephora HOM05D004439 ORTHO05D005670 6.6e-38 161.8 254 41.7
FAN08G0613 Fragaria x ananassa HOM05D004439 ORTHO05D005670 6.6e-38 161.8 263 43.0
Peaxi162Scf00074g01028 Petunia axillaris HOM05D004439 ORTHO05D005670 8.6e-38 161.4 254 40.6
FAN04G2433 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.1e-37 161.0 260 43.1
FAN18G2355 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.1e-37 161.0 263 42.6
Aqoxy1G01152 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 1.9e-37 160.2 250 42.4
Sc01g0010250 Simmondsia chinensis HOM05D004439 ORTHO05D005670 1.9e-37 160.2 239 42.3
ECA233G4302 Erigeron canadensis HOM05D004439 ORTHO05D005670 4.3e-37 159.1 254 41.7
Lsat_1_v5_gn_6_12240 Lactuca sativa HOM05D004439 ORTHO05D005670 7.3e-37 158.3 255 42.0
arahy.Tifrunner.gnm1.ann1.JNH9P6 Arachis hypogaea HOM05D004439 ORTHO05D005670 9.5e-37 157.9 223 44.8
MSTRG.1809 Avicennia marina HOM05D004439 ORTHO05D005670 1.2e-36 157.5 239 41.4
Sopen08g030490 Solanum pennellii HOM05D004439 ORTHO05D005670 1.2e-36 157.5 255 40.0
CAN.G532.113 Capsicum annuum HOM05D004439 ORTHO05D005670 3.6e-36 156.0 239 42.3
Solyc08g082200.3 Solanum lycopersicum HOM05D004439 ORTHO05D005670 4.7e-36 155.6 255 39.6
ATR0320G020 Amborella trichopoda HOM05D004439 ORTHO05D005670 6.2e-36 155.2 256 39.5
DCAR_029884 Daucus carota HOM05D004439 ORTHO05D005670 1.1e-35 154.5 273 40.7
unitig_92.g28124 Utricularia gibba HOM05D004439 ORTHO05D005670 2.3e-35 153.3 239 40.6
HPP92_001766 Vanilla planifolia HOM05D004439 ORTHO05D005670 2.3e-35 153.3 239 42.7
HPP92_001588 Vanilla planifolia HOM05D004439 ORTHO05D005670 5.2e-35 152.1 239 42.3
SalBow1G1193 Salvia bowleyana HOM05D004439 ORTHO05D005670 1.2e-34 151.0 239 41.4
Ah.12g052480 Amaranthus hybridus HOM05D004439 ORTHO05D005670 1.5e-34 150.6 265 40.8
Lj8C209T4 Lonicera japonica HOM05D004439 ORTHO05D005670 3.4e-34 149.4 212 44.3
Actinidia27332 Actinidia chinensis HOM05D004439 ORTHO05D005670 4.4e-34 149.1 243 42.4
SGA_v2.0_scaffold305G47954 Striga asiatica HOM05D004439 ORTHO05D005670 4.4e-34 149.1 205 46.3
ClCG08G001530 Citrullus lanatus HOM05D004439 ORTHO05D005670 1.3e-33 147.5 290 36.9
HanXRQChr06g0184201 Helianthus annuus HOM05D004439 ORTHO05D005670 1.3e-33 147.5 253 38.7
Nitab4.5_0008661g0010 Nicotiana tabacum HOM05D004439 ORTHO05D005670 1.3e-33 147.5 259 37.8
HanXRQChr05g0138501 Helianthus annuus HOM05D004439 ORTHO05D005670 2.9e-33 146.4 253 38.3
Nitab4.5_0001231g0030 Nicotiana tabacum HOM05D004439 ORTHO05D005670 2.4e-32 143.3 259 37.5
PSO384G1647 Papaver somniferum HOM05D004439 ORTHO05D005670 1.1e-29 134.4 239 42.3
PSO339G0633 Papaver somniferum HOM05D004439 ORTHO05D005670 3.6e-28 129.4 239 41.4
Mapoly0061s0010 Marchantia polymorpha HOM05D004439 ORTHO05D005670 3.1e-27 126.3 188 38.8
Oeu063530.1 Olea europaea HOM05D004439 ORTHO05D005670 4.4e-26 122.5 197 42.6
CSS0041217 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 1.7e-25 120.6 131 51.9
Pp3c9_1070 Physcomitrium patens HOM05D004439 ORTHO05D005670 8.3e-25 118.2 238 33.2
TPR.G13893 Trifolium pratense HOM05D004439 ORTHO05D005670 1.4e-24 117.5 90 65.6
CBR_g51004 Chara braunii HOM05D004439 ORTHO05D005670 7.1e-24 115.2 258 32.6
TPR.G9934 Trifolium pratense HOM05D004439 ORTHO05D005670 1.2e-23 114.4 197 38.6
SHI03128 Sapria himalayana HOM05D004439 ORTHO05D005670 4.6e-23 112.5 179 41.3
Lj8A194T41 Lonicera japonica HOM05D004439 ORTHO05D005670 1.7e-22 110.5 186 40.3
CBR_g30932 Chara braunii HOM05D004439 ORTHO05D005670 3.0e-22 109.8 260 32.3
AagrBONN_evm.TU.Sc2ySwM_117.2781 Anthoceros agrestis HOM05D004439 ORTHO05D005670 2.5e-21 106.7 248 34.3
MD14G1127600 Malus domestica HOM05D004439 ORTHO05D005670 1.8e-19 100.5 90 61.1
SMO361G0219 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 3.4e-18 96.3 199 33.7
SMO361G0316 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 5.8e-18 95.5 199 33.7
Gohir.A12G236000 Gossypium hirsutum HOM05D004439 ORTHO05D005670 6.4e-17 92.0 169 38.5
RcHm_v2.0_Chr5g0068871 Rosa chinensis HOM05D004439 ORTHO05D005670 8.4e-17 91.7 116 46.6
Rhsim09G0008900 Rhododendron simsii HOM05D004439 ORTHO05D005670 5.4e-16 89.0 253 32.0
Cre07.g312350 Chlamydomonas reinhardtii HOM05D004439 ORTHO05D005670 1.7e-14 84.0 54 64.8
PRCOL_00003494 Prasinoderma coloniale HOM05D004439 ORTHO05D005670 6.6e-14 82.0 168 32.1
Haze_08623 Corylus avellana HOM05D004439 ORTHO05D005670 2.5e-13 80.1 153 34.0
Lj2A169G40 Lonicera japonica HOM05D004439 ORTHO05D005670 9.6e-13 78.2 128 40.6
Cfa025390 Carpinus fangiana HOM05D004439 ORTHO05D005670 2.8e-12 76.6 145 31.7
Lj2A169G39 Lonicera japonica HOM05D004439 ORTHO05D005670 8.1e-12 75.1 92 45.7
arahy.Tifrunner.gnm1.ann1.4X43I0 Arachis hypogaea HOM05D004439 ORTHO05D005670 5.3e-11 72.4 117 39.3
TPR.G191 Trifolium pratense HOM05D004439 ORTHO05D005670 1.2e-10 71.2 128 39.8
MD06G1072700 Malus domestica HOM05D004439 ORTHO05D005670 1.0e-06 58.2 32 78.1


User provided reference genes

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