Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G55008 Arabidopsis lyrata HOM05D004919 ORTHO05D005994 3.1e-102 375.2 196 100.0
AL1G55030 Arabidopsis lyrata HOM05D004919 ORTHO05D005994 5.4e-94 347.8 199 95.0
AT1G48405 Arabidopsis thaliana HOM05D004919 ORTHO05D005994 3.7e-79 298.5 199 83.9
Carub.0001s3752 Capsella rubella HOM05D004919 ORTHO05D005994 2.5e-75 285.8 183 84.2
CARHR038020 Cardamine hirsuta HOM05D004919 ORTHO05D005994 4.0e-73 278.5 180 85.0
Sp1g35340 Schrenkiella parvula HOM05D004919 ORTHO05D005994 7.3e-67 257.7 187 78.1
Thhalv10012064m.g Eutrema salsugineum HOM05D004919 ORTHO05D005994 5.2e-65 251.5 183 78.1
BcaB07g33762 Brassica carinata HOM05D004919 ORTHO05D005994 7.5e-64 247.7 186 78.0
C08p05110 Brassica napus HOM05D004919 ORTHO05D005994 4.1e-62 241.9 199 73.4
A08p04740 Brassica napus HOM05D004919 ORTHO05D005994 1.2e-61 240.4 199 73.4
BolC8t47321H Brassica oleracea HOM05D004919 ORTHO05D005994 1.6e-61 240.0 199 72.9
BcaC07g37137 Brassica carinata HOM05D004919 ORTHO05D005994 2.1e-61 239.6 199 72.9
BraA08t32503Z Brassica rapa HOM05D004919 ORTHO05D005994 2.7e-61 239.2 199 73.4
BraA06t23655Z Brassica rapa HOM05D004919 ORTHO05D005994 1.0e-52 210.7 186 67.7
A06p04510 Brassica napus HOM05D004919 ORTHO05D005994 9.6e-51 204.1 186 66.7
Carub.0003s1741 Capsella rubella HOM05D004919 ORTHO05D005994 8.1e-50 201.1 181 63.5
Aa31LG10G5370 Aethionema arabicum HOM05D004919 ORTHO05D005994 4.0e-49 198.7 185 62.2
AT3G17680 Arabidopsis thaliana HOM05D004919 ORTHO05D005994 2.6e-48 196.1 186 62.4
Sp3g15820 Schrenkiella parvula HOM05D004919 ORTHO05D005994 4.4e-48 195.3 178 64.0
AL3G30800 Arabidopsis lyrata HOM05D004919 ORTHO05D005994 1.7e-47 193.4 185 62.7
Thhalv10021085m.g Eutrema salsugineum HOM05D004919 ORTHO05D005994 6.4e-47 191.4 178 62.9
BcaB06g25821 Brassica carinata HOM05D004919 ORTHO05D005994 5.4e-46 188.3 178 62.4
CARHR093030 Cardamine hirsuta HOM05D004919 ORTHO05D005994 1.6e-45 186.8 179 61.5
BcaB06g25823 Brassica carinata HOM05D004919 ORTHO05D005994 3.5e-45 185.7 178 61.8
BraA05t22046Z Brassica rapa HOM05D004919 ORTHO05D005994 4.6e-45 185.3 178 61.2
Aa31LG8G4550 Aethionema arabicum HOM05D004919 ORTHO05D005994 7.8e-45 184.5 187 59.9
C05p48710 Brassica napus HOM05D004919 ORTHO05D005994 1.7e-44 183.3 175 62.3
BolC5t33607H Brassica oleracea HOM05D004919 ORTHO05D005994 1.7e-44 183.3 175 62.3
A05p32170 Brassica napus HOM05D004919 ORTHO05D005994 2.3e-44 183.0 175 62.3
BcaB04g18959 Brassica carinata HOM05D004919 ORTHO05D005994 4.5e-32 142.1 119 66.4
BcaC01g03740 Brassica carinata HOM05D004919 ORTHO05D005994 3.8e-31 139.0 176 51.7
C03p49080 Brassica napus HOM05D004919 ORTHO05D005994 4.2e-30 135.6 142 60.6
BolC3t17188H Brassica oleracea HOM05D004919 ORTHO05D005994 4.2e-30 135.6 142 60.6
BcaB04g17432 Brassica carinata HOM05D004919 ORTHO05D005994 2.0e-24 116.7 93 75.3
BcaB04g17430 Brassica carinata HOM05D004919 ORTHO05D005994 7.9e-21 104.8 80 75.0
TWI60G1404 Tripterygium wilfordii HOM05D004919 ORTHO05D005994 5.3e-17 92.0 194 34.5
BcaB04g17431 Brassica carinata HOM05D004919 ORTHO05D005994 2.0e-16 90.1 83 66.3
QL03p069496 Quercus lobata HOM05D004919 ORTHO05D005994 3.8e-15 85.9 138 39.1
C06p02850 Brassica napus HOM05D004919 ORTHO05D005994 8.5e-15 84.7 88 61.4
C06p02890 Brassica napus HOM05D004919 ORTHO05D005994 8.5e-15 84.7 88 61.4
C06p02940 Brassica napus HOM05D004919 ORTHO05D005994 8.5e-15 84.7 88 61.4
TWI81G0707 Tripterygium wilfordii HOM05D004919 ORTHO05D005994 1.1e-14 84.3 197 31.5
Atru.chr9.355 Acer truncatum HOM05D004919 ORTHO05D005994 3.2e-14 82.8 170 36.5
DCAR_010223 Daucus carota HOM05D004919 ORTHO05D005994 4.2e-14 82.4 141 37.6
DCAR_013999 Daucus carota HOM05D004919 ORTHO05D005994 5.5e-14 82.0 156 35.9
CAN.G65.77 Capsicum annuum HOM05D004919 ORTHO05D005994 2.1e-13 80.1 126 38.9
TAR622G0944 Trochodendron aralioides HOM05D004919 ORTHO05D005994 2.1e-13 80.1 131 35.9
Lj2g0012075 Lotus japonicus HOM05D004919 ORTHO05D005994 2.7e-13 79.7 169 34.3
CANSAT01G3029 Cannabis sativa HOM05D004919 ORTHO05D005994 3.6e-13 79.3 170 34.7
Potri.012G038000 Populus trichocarpa HOM05D004919 ORTHO05D005994 3.6e-13 79.3 197 33.0
EL10Ac8g19437 Beta vulgaris HOM05D004919 ORTHO05D005994 7.9e-13 78.2 123 39.8
Cfa017790 Carpinus fangiana HOM05D004919 ORTHO05D005994 7.9e-13 78.2 194 32.0
Sabra12G0026400 Salix brachista HOM05D004919 ORTHO05D005994 1.0e-12 77.8 130 37.7
Ciclev10020883m.g Citrus clementina HOM05D004919 ORTHO05D005994 1.4e-12 77.4 128 34.4
CsaV3_1G005110 Cucumis sativus L. HOM05D004919 ORTHO05D005994 1.4e-12 77.4 191 30.4
Nitab4.5_0004612g0040 Nicotiana tabacum HOM05D004919 ORTHO05D005994 1.4e-12 77.4 147 36.1
VMungo0464G0748 Vigna mungo HOM05D004919 ORTHO05D005994 1.4e-12 77.4 165 33.9
Ca_00018_v3 Cicer arietinum L. HOM05D004919 ORTHO05D005994 1.8e-12 77.0 181 32.6
MELO3C001949.2 Cucumis melo HOM05D004919 ORTHO05D005994 2.3e-12 76.6 193 30.6
MBI03_g05108_MAGBIO Magnolia biondii HOM05D004919 ORTHO05D005994 2.3e-12 76.6 128 36.7
RcHm_v2.0_Chr7g0177301 Rosa chinensis HOM05D004919 ORTHO05D005994 2.3e-12 76.6 130 35.4
Dinv06632 Davidia involucrata HOM05D004919 ORTHO05D005994 3.0e-12 76.3 117 41.0
Solyc03g098450.3 Solanum lycopersicum HOM05D004919 ORTHO05D005994 3.0e-12 76.3 171 32.7
Sopen03g029190 Solanum pennellii HOM05D004919 ORTHO05D005994 3.0e-12 76.3 171 32.7
Nn4g24904 Nelumbo nucifera HOM05D004919 ORTHO05D005994 3.9e-12 75.9 128 38.3
Potri.015G030100 Populus trichocarpa HOM05D004919 ORTHO05D005994 5.1e-12 75.5 132 40.2
Hund22396 Selenicereus undatus HOM05D004919 ORTHO05D005994 5.1e-12 75.5 176 30.1
arahy.Tifrunner.gnm1.ann1.03EXEF Arachis hypogaea HOM05D004919 ORTHO05D005994 6.7e-12 75.1 130 36.2
arahy.Tifrunner.gnm1.ann1.C1QDUR Arachis hypogaea HOM05D004919 ORTHO05D005994 6.7e-12 75.1 130 36.2
CAN.G1909.1 Capsicum annuum HOM05D004919 ORTHO05D005994 6.7e-12 75.1 164 31.7
Haze_18425 Corylus avellana HOM05D004919 ORTHO05D005994 6.7e-12 75.1 185 33.5
FAN08G0951 Fragaria x ananassa HOM05D004919 ORTHO05D005994 6.7e-12 75.1 132 34.1
Glyma.09G166300 Glycine max HOM05D004919 ORTHO05D005994 6.7e-12 75.1 165 32.7
MD06G1238400 Malus domestica HOM05D004919 ORTHO05D005994 6.7e-12 75.1 130 35.4
Oeu038486.1 Olea europaea HOM05D004919 ORTHO05D005994 6.7e-12 75.1 147 34.7
Prupe.5G242300 Prunus persica HOM05D004919 ORTHO05D005994 6.7e-12 75.1 130 35.4
Hma1.2p1_0983F.1_g244060 Hydrangea macrophylla HOM05D004919 ORTHO05D005994 8.8e-12 74.7 169 34.3
CiPaw.16G072100 Carya illinoinensis HOM05D004919 ORTHO05D005994 1.1e-11 74.3 187 33.7
Oeu023547.1 Olea europaea HOM05D004919 ORTHO05D005994 1.1e-11 74.3 148 33.8
PGSC0003DMG400027049 Solanum tuberosum HOM05D004919 ORTHO05D005994 1.1e-11 74.3 146 35.6
arahy.Tifrunner.gnm1.ann1.SE8RA9 Arachis hypogaea HOM05D004919 ORTHO05D005994 1.5e-11 73.9 130 36.2
arahy.Tifrunner.gnm1.ann1.UCE8LX Arachis hypogaea HOM05D004919 ORTHO05D005994 1.5e-11 73.9 130 36.2
Manes.02G214000 Manihot esculenta HOM05D004919 ORTHO05D005994 1.5e-11 73.9 177 32.8
Phvul.004G141900 Phaseolus vulgaris HOM05D004919 ORTHO05D005994 1.5e-11 73.9 165 33.9
TPR.G24055 Trifolium pratense HOM05D004919 ORTHO05D005994 2.0e-11 73.6 177 32.2
BcaB04g17433 Brassica carinata HOM05D004919 ORTHO05D005994 2.5e-11 73.2 63 68.3
Lalb_Chr22g0353861 Lupinus albus HOM05D004919 ORTHO05D005994 2.5e-11 73.2 178 33.1
Nitab4.5_0000782g0200 Nicotiana tabacum HOM05D004919 ORTHO05D005994 2.5e-11 73.2 147 34.0
PSO063G6227 Papaver somniferum HOM05D004919 ORTHO05D005994 2.5e-11 73.2 152 34.2
PSO782G5234 Papaver somniferum HOM05D004919 ORTHO05D005994 2.5e-11 73.2 152 34.2
SalBow8G2727 Salvia bowleyana HOM05D004919 ORTHO05D005994 2.5e-11 73.2 148 34.5
Solyc06g072290.3 Solanum lycopersicum HOM05D004919 ORTHO05D005994 2.5e-11 73.2 126 36.5
PGSC0003DMG400010158 Solanum tuberosum HOM05D004919 ORTHO05D005994 2.5e-11 73.2 171 32.7
Eucgr.K02309 Eucalyptus grandis HOM05D004919 ORTHO05D005994 3.3e-11 72.8 154 31.8
Psat1g120680 Pisum sativum HOM05D004919 ORTHO05D005994 3.3e-11 72.8 170 31.2
SGA_v2.0_scaffold335G49119 Striga asiatica HOM05D004919 ORTHO05D003750 3.3e-11 72.8 138 34.8
Glyma.16G216300 Glycine max HOM05D004919 ORTHO05D005994 4.3e-11 72.4 184 31.5
Lj5P166T67 Lonicera japonica HOM05D004919 ORTHO05D005994 4.3e-11 72.4 128 37.5
Aqoxy3G04241 Aquilegia oxysepala HOM05D004919 ORTHO05D005994 5.7e-11 72.0 185 30.3
FAN13G3100 Fragaria x ananassa HOM05D004919 ORTHO05D005994 5.7e-11 72.0 161 31.1
unitig_37.g12835 Utricularia gibba HOM05D004919 ORTHO05D005994 5.7e-11 72.0 147 34.7
Actinidia34660 Actinidia chinensis HOM05D004919 ORTHO05D005994 7.4e-11 71.6 123 39.0
FAN04G2831 Fragaria x ananassa HOM05D004919 ORTHO05D005994 7.4e-11 71.6 160 31.2
MSTRG.9710 Avicennia marina HOM05D004919 ORTHO05D005994 9.7e-11 71.2 133 34.6
Cc00_g18770 Coffea canephora HOM05D004919 ORTHO05D005994 9.7e-11 71.2 111 41.4
Medtr6g081040 Medicago truncatula HOM05D004919 ORTHO05D005994 9.7e-11 71.2 169 33.1
AUR62033077 Chenopodium quinoa HOM05D004919 ORTHO05D005994 1.3e-10 70.9 139 32.4
ClCG04G012590 Citrullus lanatus HOM05D004919 ORTHO05D005994 1.3e-10 70.9 199 28.1
Peaxi162Scf00171g00315 Petunia axillaris HOM05D004919 ORTHO05D005994 1.3e-10 70.9 145 34.5
Sed0023393 Sechium edule HOM05D004919 ORTHO05D005994 1.3e-10 70.9 198 30.8
FvH4_5g18280 Fragaria vesca HOM05D004919 ORTHO05D005994 1.7e-10 70.5 162 31.5
Nitab4.5_0002049g0020 Nicotiana tabacum HOM05D004919 ORTHO05D005994 1.7e-10 70.5 119 38.7
Migut.D02060 Erythranthe guttata HOM05D004919 ORTHO05D005994 2.2e-10 70.1 163 32.5
FAN18G2684 Fragaria x ananassa HOM05D004919 ORTHO05D005994 2.2e-10 70.1 162 31.5
AUR62034040 Chenopodium quinoa HOM05D004919 ORTHO05D005994 2.8e-10 69.7 146 32.9
Lalb_Chr24g0398491 Lupinus albus HOM05D004919 ORTHO05D005994 2.8e-10 69.7 173 33.5
MSTRG.4322 Avicennia marina HOM05D004919 ORTHO05D005994 6.3e-10 68.6 126 35.7
Sabra15G0025100 Salix brachista HOM05D004919 ORTHO05D005994 6.3e-10 68.6 117 38.5
Sopen06g028660 Solanum pennellii HOM05D004919 ORTHO05D005994 8.2e-10 68.2 146 33.6
CDE05G3589 Ceratophyllum demersum HOM05D004919 ORTHO05D005994 1.4e-09 67.4 126 31.7
MD14G1244700 Malus domestica HOM05D004919 ORTHO05D005994 1.4e-09 67.4 130 32.3
Oeu061193.1 Olea europaea HOM05D004919 ORTHO05D005994 2.4e-09 66.6 145 33.8
Cpa.g.sc111.44 Carica papaya HOM05D004919 ORTHO05D005994 3.1e-09 66.2 187 28.3
DCAR_023254 Daucus carota HOM05D004919 ORTHO05D005994 4.1e-09 65.9 181 31.5
CDE05G0351 Ceratophyllum demersum HOM05D004919 ORTHO05D005994 5.3e-09 65.5 126 31.7
Lj1g0019516 Lotus japonicus HOM05D004919 ORTHO05D005994 5.3e-09 65.5 172 33.7
PGR044G0656 Punica granatum HOM05D004919 ORTHO05D005994 6.9e-09 65.1 156 32.1
ATR0618G253 Amborella trichopoda HOM05D004919 ORTHO05D005994 9.1e-09 64.7 120 35.0
Lj9C413T11 Lonicera japonica HOM05D004919 ORTHO05D005994 2.0e-08 63.5 96 39.6
Peaxi162Scf00643g00061 Petunia axillaris HOM05D004919 ORTHO05D005994 2.0e-08 63.5 143 34.3
PGR083G2189 Punica granatum HOM05D004919 ORTHO05D005994 2.6e-08 63.2 202 28.2
BcaC08g43034 Brassica carinata HOM05D004919 ORTHO05D005994 2.2e-07 60.1 54 61.1
BolC6t35415H Brassica oleracea HOM05D004919 ORTHO05D005994 2.2e-07 60.1 54 61.1
unitig_0.g27 Utricularia gibba HOM05D004919 ORTHO05D005994 3.8e-07 59.3 90 37.8
BolC6t35416H Brassica oleracea HOM05D004919 ORTHO05D005994 8.5e-07 58.2 53 60.4
GSVIVG01029368001 Vitis vinifera HOM05D004919 ORTHO05D005994 1.9e-06 57.0 147 29.9


User provided reference genes

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