Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G54980 Arabidopsis lyrata HOM05D006487 ORTHO05D007982 6.6e-188 660.6 347 100.0
AT1G48380 Arabidopsis thaliana HOM05D006487 ORTHO05D007982 2.1e-165 585.9 356 89.0
Carub.0001s3750 Capsella rubella HOM05D006487 ORTHO05D007982 2.7e-165 585.5 349 89.7
CARHR037990 Cardamine hirsuta HOM05D006487 ORTHO05D007982 1.9e-155 552.7 351 87.2
Sp1g35330 Schrenkiella parvula HOM05D006487 ORTHO05D007982 9.6e-155 550.4 348 84.5
BcaB04g17434 Brassica carinata HOM05D006487 ORTHO05D007982 4.2e-150 535.0 351 83.2
A08p04750 Brassica napus HOM05D006487 ORTHO05D007982 1.2e-149 533.5 359 82.5
BraA08t32504Z Brassica rapa HOM05D006487 ORTHO05D007982 1.2e-149 533.5 359 82.5
Thhalv10011620m.g Eutrema salsugineum HOM05D006487 ORTHO05D007982 1.3e-148 530.0 350 82.9
C08p05120 Brassica napus HOM05D006487 ORTHO05D007982 3.8e-143 511.9 358 80.4
BcaC07g37138 Brassica carinata HOM05D006487 ORTHO05D007982 6.5e-143 511.1 356 80.1
BolC8t47322H Brassica oleracea HOM05D006487 ORTHO05D007982 8.5e-143 510.8 355 81.1
THA.LOC104820327 Tarenaya hassleriana HOM05D006487 ORTHO05D007982 2.8e-106 389.4 325 67.7
Thecc.05G197400 Theobroma cacao HOM05D006487 ORTHO05D007982 3.1e-84 316.2 375 52.3
Gohir.A08G225300 Gossypium hirsutum HOM05D006487 ORTHO05D007982 1.3e-82 310.8 376 51.1
Hma1.2p1_0989F.1_g244820 Hydrangea macrophylla HOM05D006487 ORTHO05D007982 2.2e-82 310.1 348 51.7
Solyc03g098620.3 Solanum lycopersicum HOM05D006487 ORTHO05D007982 3.7e-82 309.3 326 53.4
Sopen03g029330 Solanum pennellii HOM05D006487 ORTHO05D007982 3.7e-82 309.3 326 52.8
Gorai.004G262200 Gossypium raimondii HOM05D006487 ORTHO05D007982 1.1e-81 307.8 376 50.3
TWI81G0553 Tripterygium wilfordii HOM05D006487 ORTHO05D007982 2.4e-81 306.6 374 49.7
CAN.G929.21 Capsicum annuum HOM05D006487 ORTHO05D007982 3.2e-81 306.2 329 52.3
Aa31LG10G5380 Aethionema arabicum HOM05D006487 ORTHO05D007982 5.4e-81 305.4 238 72.3
Dinv03426 Davidia involucrata HOM05D006487 ORTHO05D007982 7.1e-81 305.1 340 52.4
GSVIVG01027119001 Vitis vinifera HOM05D006487 ORTHO05D007982 9.2e-81 304.7 348 51.4
Gohir.D08G245700 Gossypium hirsutum HOM05D006487 ORTHO05D007982 1.6e-80 303.9 376 50.5
Ciclev10020398m.g Citrus clementina HOM05D006487 ORTHO05D007982 3.5e-80 302.8 362 51.1
Lj2g0009690 Lotus japonicus HOM05D006487 ORTHO05D007982 4.6e-80 302.4 381 51.2
Cpa.g.sc168.16 Carica papaya HOM05D006487 ORTHO05D007982 7.8e-80 301.6 249 62.2
Glyma.09G164600 Glycine max HOM05D006487 ORTHO05D007982 7.8e-80 301.6 369 49.9
FvH4_5g18410 Fragaria vesca HOM05D006487 ORTHO05D007982 1.3e-79 300.8 367 47.4
TAR629G0717 Trochodendron aralioides HOM05D006487 ORTHO05D007982 1.3e-79 300.8 367 49.9
Haze_18332 Corylus avellana HOM05D006487 ORTHO05D007982 1.7e-79 300.4 393 46.8
COL.COLO4_24904 Corchorus olitorius HOM05D006487 ORTHO05D007982 2.3e-79 300.1 346 51.7
PGSC0003DMG400010175 Solanum tuberosum HOM05D006487 ORTHO05D007982 2.3e-79 300.1 326 51.5
Actinidia34682 Actinidia chinensis HOM05D006487 ORTHO05D007982 1.1e-78 297.7 357 50.4
FAN13G0937 Fragaria x ananassa HOM05D006487 ORTHO05D007982 1.1e-78 297.7 333 51.4
Nitab4.5_0003040g0090 Nicotiana tabacum HOM05D006487 ORTHO05D007982 1.5e-78 297.4 332 52.4
Nitab4.5_0000782g0060 Nicotiana tabacum HOM05D006487 ORTHO05D007982 2.5e-78 296.6 340 50.6
Sed0005317 Sechium edule HOM05D006487 ORTHO05D007982 3.3e-78 296.2 366 50.3
Glyma.16G213000 Glycine max HOM05D006487 ORTHO05D007982 5.6e-78 295.4 365 49.6
Lalb_Chr22g0353991 Lupinus albus HOM05D006487 ORTHO05D007982 7.3e-78 295.0 362 48.6
Manes.02G218400 Manihot esculenta HOM05D006487 ORTHO05D007982 4.7e-77 292.4 361 52.9
Phvul.004G139000 Phaseolus vulgaris HOM05D006487 ORTHO05D007982 4.7e-77 292.4 366 48.1
Ca_11836_v3 Cicer arietinum L. HOM05D006487 ORTHO05D007982 6.2e-77 292.0 355 49.3
Medtr6g077860 Medicago truncatula HOM05D006487 ORTHO05D007982 6.2e-77 292.0 365 51.0
Potri.004G069400 Populus trichocarpa HOM05D006487 ORTHO05D007982 6.2e-77 292.0 368 48.9
Peaxi162Scf00171g00242 Petunia axillaris HOM05D006487 ORTHO05D007982 1.8e-76 290.4 298 54.7
CANSAT64G1132 Cannabis sativa HOM05D006487 ORTHO05D007982 2.3e-76 290.0 378 46.8
PSO782G2052 Papaver somniferum HOM05D006487 ORTHO05D007982 2.3e-76 290.0 369 46.6
SGA_v2.0_scaffold90G27746 Striga asiatica HOM05D006487 ORTHO05D007982 3.1e-76 289.7 331 51.4
Lsat_1_v5_gn_0_10541 Lactuca sativa HOM05D006487 ORTHO05D007982 5.2e-76 288.9 338 50.0
PSO063G4419 Papaver somniferum HOM05D006487 ORTHO05D007982 6.8e-76 288.5 366 46.4
Prupe.5G243800 Prunus persica HOM05D006487 ORTHO05D007982 6.8e-76 288.5 368 47.6
FAN18G0592 Fragaria x ananassa HOM05D006487 ORTHO05D007982 8.9e-76 288.1 333 49.2
Nn4g25081 Nelumbo nucifera HOM05D006487 ORTHO05D007982 1.2e-75 287.7 367 49.6
CsaV3_1G007510 Cucumis sativus L. HOM05D006487 ORTHO05D007982 1.5e-75 287.3 370 48.6
PGR083G2465 Punica granatum HOM05D006487 ORTHO05D007982 2.0e-75 287.0 344 48.5
Psat1g121120 Pisum sativum HOM05D006487 ORTHO05D007982 3.4e-75 286.2 355 50.4
VMungo0464G1082 Vigna mungo HOM05D006487 ORTHO05D007982 3.4e-75 286.2 352 48.6
Aqoxy3G04297 Aquilegia oxysepala HOM05D006487 ORTHO05D007982 4.4e-75 285.8 351 49.6
FAN08G3399 Fragaria x ananassa HOM05D006487 ORTHO05D007982 5.8e-75 285.4 351 47.9
HanXRQChr15g0492111 Helianthus annuus HOM05D006487 ORTHO05D007982 1.7e-74 283.9 347 48.7
MD14G1245900 Malus domestica HOM05D006487 ORTHO05D007982 2.9e-74 283.1 287 54.7
MBI06_g27513_MAGBIO Magnolia biondii HOM05D006487 ORTHO05D007982 3.7e-74 282.7 352 48.6
arahy.Tifrunner.gnm1.ann1.FG107U Arachis hypogaea HOM05D006487 ORTHO05D007982 1.1e-73 281.2 364 49.5
Atru.chr9.84 Acer truncatum HOM05D006487 ORTHO05D007982 9.2e-73 278.1 253 56.9
AUR62040775 Chenopodium quinoa HOM05D006487 ORTHO05D007982 1.6e-72 277.3 255 58.0
RcHm_v2.0_Chr7g0177071 Rosa chinensis HOM05D006487 ORTHO05D007982 2.1e-72 276.9 378 44.4
arahy.Tifrunner.gnm1.ann1.49K0I5 Arachis hypogaea HOM05D006487 ORTHO05D007982 6.0e-72 275.4 364 48.6
Rhsim08G0124800 Rhododendron simsii HOM05D006487 ORTHO05D007982 2.3e-71 273.5 261 55.9
MELO3C002168.2 Cucumis melo HOM05D006487 ORTHO05D007982 3.0e-71 273.1 378 47.9
Sabra04G0046600 Salix brachista HOM05D006487 ORTHO05D007982 8.6e-71 271.6 394 45.7
AUR62033020 Chenopodium quinoa HOM05D006487 ORTHO05D007982 1.9e-70 270.4 324 49.7
ClCG01G014820 Citrullus lanatus HOM05D006487 ORTHO05D007982 4.3e-70 269.2 249 58.2
DCAR_011682 Daucus carota HOM05D006487 ORTHO05D007982 9.6e-70 268.1 356 48.9
Migut.O00267 Erythranthe guttata HOM05D006487 ORTHO05D007982 2.1e-69 266.9 350 48.3
QL10p034099 Quercus lobata HOM05D006487 ORTHO05D007982 8.1e-69 265.0 375 45.6
MSTRG.23212 Avicennia marina HOM05D006487 ORTHO05D007982 6.8e-68 261.9 352 48.3
Sc07g0007560 Simmondsia chinensis HOM05D006487 ORTHO05D007982 1.2e-67 261.2 315 47.6
Oeu023551.1 Olea europaea HOM05D006487 ORTHO05D007982 2.0e-67 260.4 330 47.9
SalBow5G2999 Salvia bowleyana HOM05D006487 ORTHO05D007982 2.2e-66 256.9 354 46.0
Eucgr.H00648 Eucalyptus grandis HOM05D006487 ORTHO05D007982 3.8e-66 256.1 180 67.2
vmacro17744 Vaccinium macrocarpon HOM05D006487 ORTHO05D007982 5.1e-63 245.7 327 44.3
TPR.G19888 Trifolium pratense HOM05D006487 ORTHO05D007982 1.1e-62 244.6 282 51.1
Cc04_g08450 Coffea canephora HOM05D006487 ORTHO05D007982 4.3e-62 242.7 339 44.8
CDE04G1004 Ceratophyllum demersum HOM05D006487 ORTHO05D007982 2.8e-61 240.0 365 41.9
Prupe.4G244900 Prunus persica HOM05D006487 ORTHO05D007982 3.6e-61 239.6 252 52.0
ATR0618G270 Amborella trichopoda HOM05D006487 ORTHO05D007982 1.8e-60 237.3 385 42.1
Os07g0172200 Oryza sativa ssp. japonica HOM05D006487 ORTHO05D007982 3.1e-60 236.5 339 44.8
HPP92_014774 Vanilla planifolia HOM05D006487 ORTHO05D007982 3.1e-60 236.5 342 42.1
EL10Ac8g19478 Beta vulgaris HOM05D006487 ORTHO05D007982 5.3e-60 235.7 342 43.6
Zm00001eb271770 Zea mays HOM05D006487 ORTHO05D007982 4.9e-58 229.2 333 43.8
Lj9A412T44 Lonicera japonica HOM05D006487 ORTHO05D007982 4.2e-57 226.1 336 44.3
FAN04G2664 Fragaria x ananassa HOM05D006487 ORTHO05D007982 3.3e-54 216.5 333 42.3
Hund22367 Selenicereus undatus HOM05D006487 ORTHO05D007982 7.3e-54 215.3 270 47.4
SMO117G0078 Selaginella moellendorffii HOM05D006487 ORTHO05D007982 4.5e-51 206.1 179 53.1
Mapoly0080s0074 Marchantia polymorpha HOM05D006487 ORTHO05D007982 9.9e-51 204.9 325 39.7
Pp3c5_25480 Physcomitrium patens HOM05D006487 ORTHO05D007982 1.7e-50 204.1 281 39.1
TAR629G1006 Trochodendron aralioides HOM05D006487 ORTHO05D007982 2.4e-49 200.3 146 67.1
SEGI_16734 Sequoiadendron giganteum HOM05D006487 ORTHO05D007982 3.2e-49 199.9 341 36.4
AagrBONN_evm.TU.Sc2ySwM_228.567 Anthoceros agrestis HOM05D006487 ORTHO05D007982 6.0e-48 195.7 247 40.1
FAN09G4505 Fragaria x ananassa HOM05D006487 ORTHO05D007982 1.3e-45 188.0 121 71.1
Cfa017861 Carpinus fangiana HOM05D006487 ORTHO05D007982 3.1e-44 183.3 267 44.6
Pp3c25_9140 Physcomitrium patens HOM05D006487 ORTHO05D007982 7.6e-43 178.7 320 35.6
Hma1.2p1_0989F.1_g244830 Hydrangea macrophylla HOM05D006487 ORTHO05D007982 1.0e-42 178.3 164 57.9
FAN09G0815 Fragaria x ananassa HOM05D006487 ORTHO05D007982 1.7e-42 177.6 122 68.9
CiPaw.16G073400 Carya illinoinensis HOM05D006487 ORTHO05D007982 2.9e-42 176.8 267 44.6
BcaC05g27591 Brassica carinata HOM05D006487 ORTHO05D007982 1.1e-36 158.3 119 72.3
Cre13.g576500 Chlamydomonas reinhardtii HOM05D006487 ORTHO05D007982 1.4e-28 131.3 179 42.5
Prupe.2G315400 Prunus persica HOM05D006487 ORTHO05D007982 2.6e-27 127.1 231 37.7
Os06g0730200 Oryza sativa ssp. japonica HOM05D006487 ORTHO05D007982 5.9e-27 125.9 117 58.1
Ca_30285_v3 Cicer arietinum L. HOM05D006487 ORTHO05D007982 3.0e-23 113.6 190 42.1
BcaC05g27879 Brassica carinata HOM05D024450 ORTHO05D007982 5.1e-23 112.8 86 68.6
MCO12G143 Micromonas commoda HOM05D006487 ORTHO05D007982 6.5e-18 95.9 176 38.1
CBR_g34174 Chara braunii HOM05D006487 ORTHO05D007982 1.1e-17 95.1 291 28.9
PRCOL_00006754 Prasinoderma coloniale HOM05D006487 ORTHO05D007982 1.2e-16 91.7 214 29.4
Ah.14g085790 Amaranthus hybridus HOM05D006487 ORTHO05D007982 1.0e-15 88.6 82 54.9
TPR.G27400 Trifolium pratense HOM05D006487 ORTHO05D007982 3.3e-14 83.6 98 50.0
CSS0035874 Camellia sinensis var. sinensis HOM05D006487 ORTHO05D007982 2.6e-11 73.9 239 32.6
A10p09420 Brassica napus HOM05D024450 ORTHO05D033433 1.9e-09 67.8 72 54.2
C05p35710 Brassica napus HOM05D024450 ORTHO05D033433 1.9e-09 67.8 133 36.8
BraA10t43019Z Brassica rapa HOM05D024450 ORTHO05D033731 1.9e-09 67.8 72 54.2
BolC5t32286H Brassica oleracea HOM05D024450 ORTHO05D033433 1.6e-08 64.7 109 40.4
C05p38850 Brassica napus HOM05D000140 ORTHO05D000087 2.3e-07 60.8 48 68.8
SMO117G0021 Selaginella moellendorffii HOM05D006487 ORTHO05D007982 4.4e-06 56.6 83 36.1


User provided reference genes

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