Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G54900 Arabidopsis lyrata HOM05D005773 ORTHO05D006930 1.3e-175 619.8 361 100.0
AT1G48300 Arabidopsis thaliana HOM05D005773 ORTHO05D006930 2.0e-163 579.3 361 92.5
Carub.0001s3743 Capsella rubella HOM05D005773 ORTHO05D006930 1.1e-137 493.8 376 81.9
CARHR037910 Cardamine hirsuta HOM05D005773 ORTHO05D006930 3.0e-135 485.7 366 80.6
Sp1g35250 Schrenkiella parvula HOM05D005773 ORTHO05D006930 1.1e-132 477.2 381 78.7
Thhalv10011577m.g Eutrema salsugineum HOM05D005773 ORTHO05D006930 4.5e-131 471.9 378 78.6
BcaB04g17451 Brassica carinata HOM05D005773 ORTHO05D006930 5.9e-123 444.9 357 77.3
A08p04910 Brassica napus HOM05D005773 ORTHO05D006930 6.6e-122 441.4 358 78.8
BraA08t32517Z Brassica rapa HOM05D005773 ORTHO05D006930 6.6e-122 441.4 358 78.8
BolC8t47338H Brassica oleracea HOM05D005773 ORTHO05D006930 1.5e-121 440.3 358 78.8
C08p05240 Brassica napus HOM05D005773 ORTHO05D006930 4.7e-120 435.3 360 77.8
Aa31LG10G5470 Aethionema arabicum HOM05D005773 ORTHO05D006930 8.9e-111 404.4 379 67.0
BcaC07g37153 Brassica carinata HOM05D005773 ORTHO05D006930 1.4e-108 397.1 342 76.0
THA.LOC104802618 Tarenaya hassleriana HOM05D005773 ORTHO05D006930 1.3e-80 304.3 389 55.0
TAR633G1051 Trochodendron aralioides HOM05D005773 ORTHO05D006930 5.7e-49 199.1 382 39.3
MD13G1156700 Malus domestica HOM05D005773 ORTHO05D006930 1.6e-48 197.6 381 40.9
Aqoxy2G02493 Aquilegia oxysepala HOM05D005773 ORTHO05D006930 1.2e-43 181.4 384 39.3
Prupe.1G103600 Prunus persica HOM05D005773 ORTHO05D006930 1.6e-43 181.0 390 40.0
MBI19_g30285_MAGBIO Magnolia biondii HOM05D005773 ORTHO05D006930 1.8e-42 177.6 378 38.1
GSVIVG01017699001 Vitis vinifera HOM05D005773 ORTHO05D006930 2.3e-42 177.2 330 37.9
RcHm_v2.0_Chr4g0427881 Rosa chinensis HOM05D005773 ORTHO05D006930 5.1e-42 176.0 369 41.5
Dinv24720 Davidia involucrata HOM05D005773 ORTHO05D006930 6.7e-42 175.6 407 36.4
QL06p014502 Quercus lobata HOM05D005773 ORTHO05D006930 1.1e-41 174.9 395 36.7
MD16G1134300 Malus domestica HOM05D005773 ORTHO05D006930 3.3e-41 173.3 381 40.9
Nn4g25353 Nelumbo nucifera HOM05D005773 ORTHO05D006930 5.7e-41 172.6 383 36.8
PSO210G3229 Papaver somniferum HOM05D005773 ORTHO05D006930 5.7e-41 172.6 364 39.3
Haze_00756 Corylus avellana HOM05D005773 ORTHO05D006930 9.7e-41 171.8 387 33.1
Manes.03G212700 Manihot esculenta HOM05D005773 ORTHO05D006930 2.0e-38 164.1 367 35.4
CSS0030034 Camellia sinensis var. sinensis HOM05D005773 ORTHO05D006930 2.2e-37 160.6 304 38.5
TWI53G0973 Tripterygium wilfordii HOM05D005773 ORTHO05D006930 2.9e-37 160.2 363 39.4
Rhsim04G0249100 Rhododendron simsii HOM05D005773 ORTHO05D006930 5.0e-37 159.5 413 38.5
Nn3g21943 Nelumbo nucifera HOM05D005773 ORTHO05D006930 1.1e-36 158.3 393 37.7
HanXRQChr05g0148961 Helianthus annuus HOM05D005773 ORTHO05D006930 1.9e-36 157.5 355 41.1
Lsat_1_v5_gn_6_118320 Lactuca sativa HOM05D005773 ORTHO05D006930 9.4e-36 155.2 356 35.7
FAN07G0153 Fragaria x ananassa HOM05D005773 ORTHO05D006930 1.2e-35 154.8 371 41.5
FAN17G1594 Fragaria x ananassa HOM05D005773 ORTHO05D006930 2.1e-35 154.1 362 40.3
FvH4_4g21650 Fragaria vesca HOM05D005773 ORTHO05D006930 2.7e-35 153.7 368 40.5
Potri.010G003200 Populus trichocarpa HOM05D005773 ORTHO05D006930 2.7e-35 153.7 377 38.5
Gohir.D11G109200 Gossypium hirsutum HOM05D005773 ORTHO05D006930 3.6e-35 153.3 382 34.3
Sc25g0002150 Simmondsia chinensis HOM05D005773 ORTHO05D006930 7.9e-35 152.1 394 40.4
SalBow7G4520 Salvia bowleyana HOM05D005773 ORTHO05D006930 1.0e-34 151.8 383 33.2
Gorai.007G116800 Gossypium raimondii HOM05D005773 ORTHO05D006930 1.4e-34 151.4 382 34.3
MSTRG.14719 Avicennia marina HOM05D005773 ORTHO05D006930 1.8e-34 151.0 345 31.3
SalBow7G0248 Salvia bowleyana HOM05D005773 ORTHO05D006930 2.3e-34 150.6 383 33.4
CANSAT78G1256 Cannabis sativa HOM05D005773 ORTHO05D006930 6.7e-34 149.1 371 37.5
PGR004G1534 Punica granatum HOM05D005773 ORTHO05D006930 3.3e-33 146.7 362 41.2
Potri.002G187300 Populus trichocarpa HOM05D005773 ORTHO05D006930 4.4e-33 146.4 351 34.8
Hund12260 Selenicereus undatus HOM05D005773 ORTHO05D006930 5.7e-33 146.0 369 33.6
Lalb_Chr13g0299011 Lupinus albus HOM05D005773 ORTHO05D006930 9.7e-33 145.2 373 38.6
Cpa.g.sc146.13 Carica papaya HOM05D005773 ORTHO05D006930 1.3e-32 144.8 357 31.1
Gohir.A11G104400 Gossypium hirsutum HOM05D005773 ORTHO05D006930 1.3e-32 144.8 381 34.4
Oeu012285.1 Olea europaea HOM05D005773 ORTHO05D006930 2.2e-32 144.1 399 33.1
Sabra10G0002700 Salix brachista HOM05D005773 ORTHO05D006930 2.2e-32 144.1 376 38.3
Duzib133G1161 Durio zibethinus HOM05D005773 ORTHO05D006930 1.1e-31 141.7 384 33.9
Thecc.01G324900 Theobroma cacao HOM05D005773 ORTHO05D006930 1.1e-31 141.7 406 30.8
Actinidia18514 Actinidia chinensis HOM05D005773 ORTHO05D006930 4.1e-31 139.8 345 35.9
Psat0s1206g0160 Pisum sativum HOM05D005773 ORTHO05D006930 4.1e-31 139.8 368 37.8
SGA_v2.0_scaffold109G31080 Striga asiatica HOM05D005773 ORTHO05D006930 7.0e-31 139.0 374 31.3
CiPaw.01G128000 Carya illinoinensis HOM05D005773 ORTHO05D006930 3.5e-30 136.7 271 37.3
CDE02G3050 Ceratophyllum demersum HOM05D005773 ORTHO05D006930 3.5e-30 136.7 346 36.7
Ah.07g203560 Amaranthus hybridus HOM05D005773 ORTHO05D006930 1.7e-29 134.4 321 35.8
MSTRG.13210 Avicennia marina HOM05D005773 ORTHO05D006930 1.7e-29 134.4 392 33.2
EL10Ac3g06235 Beta vulgaris HOM05D005773 ORTHO05D006930 2.9e-29 133.7 385 32.2
Lj4g0014107 Lotus japonicus HOM05D005773 ORTHO05D006930 2.9e-29 133.7 374 33.2
CDE09G0185 Ceratophyllum demersum HOM05D005773 ORTHO05D006930 6.5e-29 132.5 348 34.2
ECA246G2714 Erigeron canadensis HOM05D005773 ORTHO05D006930 6.5e-29 132.5 352 39.5
Nitab4.5_0000978g0060 Nicotiana tabacum HOM05D005773 ORTHO05D006930 1.5e-28 131.3 416 31.7
Medtr4g124080 Medicago truncatula HOM05D005773 ORTHO05D006930 3.2e-28 130.2 382 35.9
TPR.G12556 Trifolium pratense HOM05D005773 ORTHO05D006930 3.2e-28 130.2 380 37.6
arahy.Tifrunner.gnm1.ann1.YBC12K Arachis hypogaea HOM05D005773 ORTHO05D006930 5.5e-28 129.4 358 36.3
Solyc12g098850.2 Solanum lycopersicum HOM05D005773 ORTHO05D006930 5.5e-28 129.4 405 33.1
Ciclev10005574m.g Citrus clementina HOM05D005773 ORTHO05D006930 7.2e-28 129.0 295 33.9
Migut.H01460 Erythranthe guttata HOM05D005773 ORTHO05D006930 7.2e-28 129.0 373 34.6
PGSC0003DMG400004596 Solanum tuberosum HOM05D005773 ORTHO05D006930 7.2e-28 129.0 405 32.3
Peaxi162Scf00323g00817 Petunia axillaris HOM05D005773 ORTHO05D006930 3.6e-27 126.7 423 33.8
Nitab4.5_0012375g0020 Nicotiana tabacum HOM05D005773 ORTHO05D006930 6.1e-27 125.9 418 33.5
VMungo1215G1523 Vigna mungo HOM05D005773 ORTHO05D006930 6.1e-27 125.9 362 34.8
Nn3g21941 Nelumbo nucifera HOM05D005773 ORTHO05D006930 8.0e-27 125.6 390 36.9
CAN.G484.97 Capsicum annuum HOM05D005773 ORTHO05D006930 2.3e-26 124.0 429 30.1
Sopen12g033600 Solanum pennellii HOM05D005773 ORTHO05D006930 2.3e-26 124.0 405 31.4
ATR0796G282 Amborella trichopoda HOM05D005773 ORTHO05D006930 5.2e-26 122.9 370 37.3
Duzib138G1928 Durio zibethinus HOM05D005773 ORTHO05D006930 8.8e-26 122.1 380 30.8
Glyma.13G118300 Glycine max HOM05D005773 ORTHO05D006930 4.4e-25 119.8 360 33.9
Cfa015740 Carpinus fangiana HOM05D005773 ORTHO05D006930 1.3e-24 118.2 248 34.7
Cc03_g00040 Coffea canephora HOM05D005773 ORTHO05D006930 1.3e-24 118.2 291 34.7
AUR62002540 Chenopodium quinoa HOM05D005773 ORTHO05D006930 2.2e-24 117.5 383 32.1
arahy.Tifrunner.gnm1.ann1.RWG9MN Arachis hypogaea HOM05D005773 ORTHO05D006930 6.3e-24 115.9 361 35.2
Glyma.17G041600 Glycine max HOM05D005773 ORTHO05D006930 8.2e-24 115.5 367 33.2
Ca_21368_v3 Cicer arietinum L. HOM05D005773 ORTHO05D006930 1.4e-23 114.8 362 36.5
Ciclev10020833m.g Citrus clementina HOM05D005773 ORTHO05D006930 2.4e-23 114.0 360 34.4
Hma1.2p1_1449F.1_g284070 Hydrangea macrophylla HOM05D005773 ORTHO05D006930 4.1e-23 113.2 312 35.6
arahy.Tifrunner.gnm1.ann1.9W2SDJ Arachis hypogaea HOM05D005773 ORTHO05D006930 1.2e-22 111.7 367 35.1
Actinidia01071 Actinidia chinensis HOM05D005773 ORTHO05D006930 1.6e-22 111.3 312 37.5
Phvul.003G123000 Phaseolus vulgaris HOM05D005773 ORTHO05D006930 3.5e-22 110.2 360 33.6
Manes.01G234700 Manihot esculenta HOM05D005773 ORTHO05D006930 5.9e-22 109.4 318 34.6
BolC3t19970H Brassica oleracea HOM05D005773 ORTHO05D006930 1.0e-21 108.6 187 46.0
Eucgr.H04131 Eucalyptus grandis HOM05D005773 ORTHO05D006930 2.2e-21 107.5 307 38.8
Sed0002380 Sechium edule HOM05D005773 ORTHO05D006930 5.0e-21 106.3 362 35.9
arahy.Tifrunner.gnm1.ann1.F7JGYB Arachis hypogaea HOM05D005773 ORTHO05D006930 1.1e-20 105.1 249 41.0
BcaC01g00240 Brassica carinata HOM05D005773 ORTHO05D006930 1.1e-20 105.1 149 47.0
Atru.chr5.865 Acer truncatum HOM05D005773 ORTHO05D006930 1.5e-20 104.8 237 32.1
COL.COLO4_23133 Corchorus olitorius HOM05D005773 ORTHO05D006930 1.9e-20 104.4 366 29.5
Aqoxy2G02494 Aquilegia oxysepala HOM05D005773 ORTHO05D006930 4.2e-20 103.2 354 34.2
Sed0009476 Sechium edule HOM05D005773 ORTHO05D006930 1.2e-19 101.7 368 36.7
arahy.Tifrunner.gnm1.ann1.AWA2M3 Arachis hypogaea HOM05D000254 ORTHO05D000165 2.7e-19 100.5 179 34.1
CsaV3_3G015560 Cucumis sativus L. HOM05D005773 ORTHO05D006930 3.6e-19 100.1 367 33.2
AUR62023652 Chenopodium quinoa HOM05D005773 ORTHO05D006930 8.0e-19 99.0 90 55.6
CARHR041400 Cardamine hirsuta HOM05D005773 ORTHO05D006930 2.0e-17 94.4 52 82.7
arahy.Tifrunner.gnm1.ann1.EN1MLR Arachis hypogaea HOM05D005773 ORTHO05D006930 5.7e-17 92.8 321 35.2
ClCG05G006890 Citrullus lanatus HOM05D005773 ORTHO05D006930 5.7e-17 92.8 367 33.2
unitig_26.g9353 Utricularia gibba HOM05D005773 ORTHO05D006930 1.7e-16 91.3 180 34.4
MELO3C006755.2 Cucumis melo HOM05D005773 ORTHO05D006930 2.2e-16 90.9 116 39.7
Atru.chr4.3177 Acer truncatum HOM05D005773 ORTHO05D006930 4.8e-16 89.7 213 33.3
HPP92_012765 Vanilla planifolia HOM05D005773 ORTHO05D006930 6.3e-16 89.4 359 31.8
Zm00001eb417470 Zea mays HOM05D005773 ORTHO05D006930 7.7e-14 82.4 86 48.8
Os05g0137300 Oryza sativa ssp. japonica HOM05D005773 ORTHO05D006930 1.7e-13 81.3 169 38.5
Hma1.2p1_1067F.1_g253800 Hydrangea macrophylla HOM05D005773 ORTHO05D006930 1.0e-10 72.0 70 58.6
SEGI_38196 Sequoiadendron giganteum HOM05D005773 ORTHO05D006930 5.2e-10 69.7 331 33.5
FAN07G1029 Fragaria x ananassa HOM05D005773 ORTHO05D006930 8.8e-10 68.9 157 36.3
BcaB08g34443 Brassica carinata HOM05D005773 ORTHO05D006930 2.0e-09 67.8 64 59.4
SEGI_24223 Sequoiadendron giganteum HOM05D005773 ORTHO05D006930 5.7e-09 66.2 329 32.8
TAR625G0572 Trochodendron aralioides HOM05D005773 ORTHO05D006930 2.8e-08 63.9 55 54.5
BcaB05g23126 Brassica carinata HOM05D005773 ORTHO05D006930 3.7e-08 63.5 98 46.9
Aqoxy1G03305 Aquilegia oxysepala HOM05D006996 ORTHO05D008961 6.3e-08 62.8 90 46.7
Aqoxy1G04021 Aquilegia oxysepala HOM05D005773 ORTHO05D006930 9.2e-07 58.9 79 50.6
SMO356G0556 Selaginella moellendorffii HOM05D005773 ORTHO05D006930 1.2e-06 58.5 59 47.5
Cpa.g.sc57.12 Carica papaya HOM05D005773 ORTHO05D006930 2.0e-06 57.8 45 60.0
Aqoxy7G02275 Aquilegia oxysepala HOM05D005773 ORTHO05D006930 2.7e-06 57.4 76 50.0
Mapoly0035s0141 Marchantia polymorpha HOM05D005773 ORTHO05D006930 2.7e-06 57.4 95 36.8
Pp3c14_16980 Physcomitrium patens HOM05D029403 ORTHO05D006930 7.8e-06 55.8 53 47.2


User provided reference genes

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