Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G53560 Arabidopsis lyrata HOM05D000509 ORTHO05D006393 2.4e-34 149.1 128 100.0
AL5G43630 Arabidopsis lyrata HOM05D000509 ORTHO05D006393 1.0e-32 143.7 128 85.9
AT3G61370 Arabidopsis thaliana HOM05D000509 ORTHO05D006393 1.8e-29 132.9 128 66.4
Carub.0005s2804 Capsella rubella HOM05D000509 ORTHO05D006393 2.0e-28 129.4 128 93.0
Sp5g02030 Schrenkiella parvula HOM05D000509 ORTHO05D006393 4.5e-25 118.2 128 68.0
CARHR171710 Cardamine hirsuta HOM05D000509 ORTHO05D006393 7.7e-25 117.5 128 76.6
Thhalv10006311m.g Eutrema salsugineum HOM05D000509 ORTHO05D006393 6.5e-24 114.4 128 71.1
A09p53420 Brassica napus HOM05D000509 ORTHO05D006393 3.7e-19 98.6 68 76.5
BraA09t40768Z Brassica rapa HOM05D000509 ORTHO05D006393 3.7e-19 98.6 68 76.5
BcaC07g40634 Brassica carinata HOM05D000509 ORTHO05D006393 3.1e-18 95.5 121 56.2
C08p36230 Brassica napus HOM05D000509 ORTHO05D006393 3.1e-18 95.5 61 80.3
BolC8t51205H Brassica oleracea HOM05D000509 ORTHO05D006393 3.1e-18 95.5 61 80.3
Aa31LG1G27330 Aethionema arabicum HOM05D000509 ORTHO05D006393 2.9e-16 89.0 68 69.1
BcaC02g10220 Brassica carinata HOM05D000509 ORTHO05D006393 7.2e-15 84.3 71 69.0
C04p31370 Brassica napus HOM05D000509 ORTHO05D006393 7.2e-15 84.3 71 69.0
CiPaw.01G061300 Carya illinoinensis HOM05D000509 ORTHO05D006393 1.2e-14 83.6 67 64.2
A04p01140 Brassica napus HOM05D000509 ORTHO05D006393 3.6e-14 82.0 71 70.4
BraA04t15830Z Brassica rapa HOM05D000509 ORTHO05D006393 3.6e-14 82.0 71 70.4
PGR042G3203 Punica granatum HOM05D000509 ORTHO05D006393 1.0e-13 80.5 62 64.5
Ciclev10022504m.g Citrus clementina HOM05D000509 ORTHO05D006393 3.0e-13 79.0 68 60.3
THA.LOC104820589 Tarenaya hassleriana HOM05D000509 ORTHO05D006393 5.2e-13 78.2 68 58.8
THA.LOC104798540 Tarenaya hassleriana HOM05D000509 ORTHO05D006393 8.8e-13 77.4 68 58.8
Glyma.18G233000 Glycine max HOM05D000509 ORTHO05D006393 1.2e-12 77.0 66 63.6
BcaC09g52246 Brassica carinata HOM05D000509 ORTHO05D006393 2.0e-12 76.3 126 77.8
Cpa.g.sc11.3 Carica papaya HOM05D000509 ORTHO05D006393 2.6e-12 75.9 68 61.8
Cfa003925 Carpinus fangiana HOM05D000509 ORTHO05D006393 3.4e-12 75.5 67 58.2
Haze_15506 Corylus avellana HOM05D000509 ORTHO05D006393 4.4e-12 75.1 67 58.2
BolC4t24686H Brassica oleracea HOM05D000509 ORTHO05D006393 9.8e-12 73.9 71 60.6
Thecc.04G199400 Theobroma cacao HOM05D000509 ORTHO05D006393 1.7e-11 73.2 68 57.4
CiPaw.02G030900 Carya illinoinensis HOM05D000509 ORTHO05D006393 2.8e-11 72.4 67 56.7
VMungo0540G0837 Vigna mungo HOM05D000509 ORTHO05D006393 2.8e-11 72.4 66 60.6
Phvul.008G065500 Phaseolus vulgaris HOM05D000509 ORTHO05D006393 6.3e-11 71.2 66 57.6
Ca_07920_v3 Cicer arietinum L. HOM05D000509 ORTHO05D006393 8.3e-11 70.9 66 57.6
arahy.Tifrunner.gnm1.ann1.E8SAKG Arachis hypogaea HOM05D000509 ORTHO05D006393 2.4e-10 69.3 67 58.2
TWI23G0635 Tripterygium wilfordii HOM05D000509 ORTHO05D006393 2.4e-10 69.3 68 52.9
Phvul.008G062400 Phaseolus vulgaris HOM05D000509 ORTHO05D006393 4.1e-10 68.6 66 57.6
arahy.Tifrunner.gnm1.ann1.NYL5F5 Arachis hypogaea HOM05D000509 ORTHO05D006393 5.4e-10 68.2 67 56.7
TWI14G0500 Tripterygium wilfordii HOM05D000509 ORTHO05D006393 1.2e-09 67.0 65 55.4
VMungo1383G0114 Vigna mungo HOM05D000509 ORTHO05D006393 1.2e-09 67.0 65 55.4
AT4G07940 Arabidopsis thaliana HOM05D000509 ORTHO05D006393 2.0e-09 66.2 128 39.8
Eucgr.B00880 Eucalyptus grandis HOM05D000509 ORTHO05D006393 2.0e-09 66.2 68 51.5
Eucgr.B00993 Eucalyptus grandis HOM05D000509 ORTHO05D006393 2.0e-09 66.2 68 51.5
QL93p0259_0027 Quercus lobata HOM05D000509 ORTHO05D006393 3.5e-09 65.5 67 52.2
CSS0014656 Camellia sinensis var. sinensis HOM05D000509 ORTHO05D006393 5.9e-09 64.7 59 57.6
CSS0014005 Camellia sinensis var. sinensis HOM05D000509 ORTHO05D006393 7.7e-09 64.3 59 57.6
Duzib151G0093 Durio zibethinus HOM05D000509 ORTHO05D006393 1.3e-08 63.5 68 50.0
Actinidia12704 Actinidia chinensis HOM05D000509 ORTHO05D006393 2.2e-08 62.8 67 50.7
Manes.07G019100 Manihot esculenta HOM05D000509 ORTHO05D006393 2.2e-08 62.8 68 47.1
Aa31LG5G5170 Aethionema arabicum HOM05D000509 ORTHO05D006393 2.9e-08 62.4 45 66.7
FvH4_7g14280 Fragaria vesca HOM05D000509 ORTHO05D006393 2.9e-08 62.4 71 56.3
FAN10G1528 Fragaria x ananassa HOM05D000509 ORTHO05D006393 2.9e-08 62.4 71 56.3
FAN10G1645 Fragaria x ananassa HOM05D000509 ORTHO05D006393 2.9e-08 62.4 71 56.3
QL01p005382 Quercus lobata HOM05D000509 ORTHO05D006393 2.9e-08 62.4 67 50.7
Gohir.A02G020500 Gossypium hirsutum HOM05D000509 ORTHO05D006393 3.8e-08 62.0 68 51.5
Gohir.A08G013720 Gossypium hirsutum HOM05D000509 ORTHO05D006393 3.8e-08 62.0 68 51.5
Rhsim07G0117600 Rhododendron simsii HOM05D000509 ORTHO05D006393 5.0e-08 61.6 65 50.8
Rhsim07G0117300 Rhododendron simsii HOM05D000509 ORTHO05D006393 6.5e-08 61.2 65 49.2
RcHm_v2.0_Chr1g0355271 Rosa chinensis HOM05D000509 ORTHO05D006393 6.5e-08 61.2 69 56.5
Prupe.2G170600 Prunus persica HOM05D000509 ORTHO05D006393 8.5e-08 60.8 67 50.7
TAR636G2420 Trochodendron aralioides HOM05D000509 ORTHO05D006393 8.5e-08 60.8 67 50.7
Prupe.1G174800 Prunus persica HOM05D000509 ORTHO05D006393 1.1e-07 60.5 67 50.7
Medtr8g095630 Medicago truncatula HOM05D000509 ORTHO05D006393 1.5e-07 60.1 66 53.0
PSO478G1119 Papaver somniferum HOM05D000509 ORTHO05D006393 1.5e-07 60.1 73 49.3
BcaC05g27864 Brassica carinata HOM05D000770 ORTHO05D000586 1.9e-07 59.7 49 67.3
FAN03G2840 Fragaria x ananassa HOM05D000509 ORTHO05D006393 1.9e-07 59.7 71 54.9
Medtr7g077710 Medicago truncatula HOM05D000509 ORTHO05D006393 1.9e-07 59.7 66 53.0
MBI17_g24690_MAGBIO Magnolia biondii HOM05D000509 ORTHO05D006393 2.5e-07 59.3 68 47.1
Manes.10G122200 Manihot esculenta HOM05D000509 ORTHO05D006393 2.5e-07 59.3 68 47.1
PSO782G0796 Papaver somniferum HOM05D000509 ORTHO05D006393 2.5e-07 59.3 73 49.3
Gohir.D02G024500 Gossypium hirsutum HOM05D000509 ORTHO05D006393 3.2e-07 58.9 68 48.5
Lalb_Chr03g0038131 Lupinus albus HOM05D000509 ORTHO05D006393 3.2e-07 58.9 63 55.6
BolC5t32602H Brassica oleracea HOM05D000770 ORTHO05D000586 5.5e-07 58.2 43 69.8
TPR.G37720 Trifolium pratense HOM05D000509 ORTHO05D006393 5.5e-07 58.2 45 66.7
QL10p007195 Quercus lobata HOM05D000509 ORTHO05D006393 7.2e-07 57.8 45 60.0
Dinv41795 Davidia involucrata HOM05D000509 ORTHO05D006393 9.4e-07 57.4 65 47.7
Sabra02G0116600 Salix brachista HOM05D000509 ORTHO05D006393 9.4e-07 57.4 69 46.4
Actinidia33421 Actinidia chinensis HOM05D001542 ORTHO05D001416 1.2e-06 57.0 62 48.4
DCAR_019105 Daucus carota HOM05D000509 ORTHO05D006393 1.2e-06 57.0 65 47.7
Lj1g0015308 Lotus japonicus HOM05D000509 ORTHO05D006393 1.2e-06 57.0 59 54.2
Potri.016G069200 Populus trichocarpa HOM05D000509 ORTHO05D006393 1.2e-06 57.0 69 46.4
GSVIVG01008341001 Vitis vinifera HOM05D000509 ORTHO05D006393 1.6e-06 56.6 51 56.9
Gorai.005G030400 Gossypium raimondii HOM05D000509 ORTHO05D006393 2.1e-06 56.2 68 48.5
Psat3g108360 Pisum sativum HOM05D000509 ORTHO05D006393 2.1e-06 56.2 62 50.0
BcaC07g41071 Brassica carinata HOM05D000509 ORTHO05D032338 6.1e-06 54.7 43 65.1
C08p40730 Brassica napus HOM05D000075 ORTHO05D032338 6.1e-06 54.7 43 65.1
BolC8t51638H Brassica oleracea HOM05D000075 ORTHO05D032338 6.1e-06 54.7 43 65.1
MD01G1060700 Malus domestica HOM05D000509 ORTHO05D006393 6.1e-06 54.7 67 46.3


User provided reference genes

Program Settings