Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G52600 Arabidopsis lyrata HOM05D002989 ORTHO05D003218 2.0e-80 302.4 149 100.0
Carub.0005s2998 Capsella rubella HOM05D002989 ORTHO05D003218 2.6e-24 115.9 126 54.0
AL5G46190 Arabidopsis lyrata HOM05D002989 ORTHO05D003218 4.4e-24 115.2 126 54.0
CARHR291630 Cardamine hirsuta HOM05D002989 ORTHO05D003218 1.7e-23 113.2 126 51.6
AT3G63340 Arabidopsis thaliana HOM05D002989 ORTHO05D003218 2.9e-23 112.5 117 55.6
Thhalv10005760m.g Eutrema salsugineum HOM05D002989 ORTHO05D003218 4.2e-22 108.6 115 54.8
A04p00100 Brassica napus HOM05D002989 ORTHO05D003218 9.3e-22 107.5 115 53.9
BraA04t15730Z Brassica rapa HOM05D002989 ORTHO05D003218 9.3e-22 107.5 115 53.9
Sp5g00200 Schrenkiella parvula HOM05D002989 ORTHO05D003218 1.2e-21 107.1 115 53.9
BcaB02g08065 Brassica carinata HOM05D002989 ORTHO05D003218 2.7e-21 105.9 115 53.0
C04p29910 Brassica napus HOM05D002989 ORTHO05D003218 2.7e-21 105.9 115 53.0
QL12p042063 Quercus lobata HOM05D002989 ORTHO05D003218 7.8e-21 104.4 95 56.8
Cfa006196 Carpinus fangiana HOM05D002989 ORTHO05D003218 1.3e-20 103.6 95 55.8
ClCG07G000490 Citrullus lanatus HOM05D002989 ORTHO05D003218 2.3e-20 102.8 92 56.5
Haze_04647 Corylus avellana HOM05D002989 ORTHO05D003218 2.3e-20 102.8 95 55.8
CiPaw.08G108900 Carya illinoinensis HOM05D002989 ORTHO05D003218 3.0e-20 102.4 95 54.7
Cc01_g19030 Coffea canephora HOM05D002989 ORTHO05D003218 6.6e-20 101.3 124 46.0
RcHm_v2.0_Chr6g0290051 Rosa chinensis HOM05D002989 ORTHO05D003218 6.6e-20 101.3 120 49.2
COL.COLO4_09194 Corchorus olitorius HOM05D002989 ORTHO05D003218 8.7e-20 100.9 102 53.9
Lj2C1165G7 Lonicera japonica HOM05D002989 ORTHO05D003218 8.7e-20 100.9 87 59.8
Manes.05G081600 Manihot esculenta HOM05D002989 ORTHO05D003218 1.1e-19 100.5 102 52.9
TWI12G0259 Tripterygium wilfordii HOM05D002989 ORTHO05D003218 1.5e-19 100.1 102 52.9
Atru.chr5.1517 Acer truncatum HOM05D002989 ORTHO05D003218 2.5e-19 99.4 108 50.9
MD03G1258500 Malus domestica HOM05D002989 ORTHO05D003218 2.5e-19 99.4 95 54.7
CsaV3_2G013890 Cucumis sativus L. HOM05D002989 ORTHO05D003218 3.3e-19 99.0 90 55.6
Peaxi162Scf00230g00019 Petunia axillaris HOM05D002989 ORTHO05D003218 4.3e-19 98.6 146 41.8
SalBow4G0275 Salvia bowleyana HOM05D002989 ORTHO05D003218 4.3e-19 98.6 119 47.1
SGA_v2.0_scaffold1G00532 Striga asiatica HOM05D002989 ORTHO05D003218 4.3e-19 98.6 135 43.7
Sabra05G0164000 Salix brachista HOM05D002989 ORTHO05D003218 5.6e-19 98.2 107 49.5
Thecc.01G272000 Theobroma cacao HOM05D002989 ORTHO05D003218 5.6e-19 98.2 102 52.9
Sed0003144 Sechium edule HOM05D002989 ORTHO05D003218 7.3e-19 97.8 95 52.6
MELO3C014325.2 Cucumis melo HOM05D002989 ORTHO05D003218 1.6e-18 96.7 90 54.4
Ciclev10018605m.g Citrus clementina HOM05D002989 ORTHO05D003218 2.1e-18 96.3 95 52.6
Migut.D00359 Erythranthe guttata HOM05D002989 ORTHO05D003218 2.1e-18 96.3 124 43.5
FvH4_2g23010 Fragaria vesca HOM05D002989 ORTHO05D003218 2.8e-18 95.9 95 53.7
FAN15G0470 Fragaria x ananassa HOM05D002989 ORTHO05D003218 2.8e-18 95.9 95 53.7
FAN24G2837 Fragaria x ananassa HOM05D002989 ORTHO05D003218 2.8e-18 95.9 95 53.7
FAN27G2040 Fragaria x ananassa HOM05D002989 ORTHO05D003218 2.8e-18 95.9 95 53.7
MSTRG.18266 Avicennia marina HOM05D002989 ORTHO05D003218 3.6e-18 95.5 140 41.4
Lj5g0006345 Lotus japonicus HOM05D002989 ORTHO05D003218 3.6e-18 95.5 90 52.2
Potri.005G214650 Populus trichocarpa HOM05D002989 ORTHO05D003218 3.6e-18 95.5 95 53.7
PGR044G1058 Punica granatum HOM05D002989 ORTHO05D003218 3.6e-18 95.5 117 45.3
BolC4t24522H Brassica oleracea HOM05D002989 ORTHO05D003218 4.8e-18 95.1 143 42.7
Eucgr.K03327 Eucalyptus grandis HOM05D002989 ORTHO05D003218 4.8e-18 95.1 108 47.2
HanXRQChr10g0281961 Helianthus annuus HOM05D002989 ORTHO05D003218 4.8e-18 95.1 97 50.5
vmacro14890 Vaccinium macrocarpon HOM05D002989 ORTHO05D003218 4.8e-18 95.1 101 51.5
arahy.Tifrunner.gnm1.ann1.V0L3RT Arachis hypogaea HOM05D002989 ORTHO05D003218 6.2e-18 94.7 93 49.5
AUR62011976 Chenopodium quinoa HOM05D002989 ORTHO05D003218 6.2e-18 94.7 82 56.1
AUR62032285 Chenopodium quinoa HOM05D002989 ORTHO05D003218 6.2e-18 94.7 82 56.1
Dinv32887 Davidia involucrata HOM05D002989 ORTHO05D003218 6.2e-18 94.7 112 47.3
Oeu025764.3 Olea europaea HOM05D002989 ORTHO05D003218 6.2e-18 94.7 117 46.2
GSVIVG01003117001 Vitis vinifera HOM05D002989 ORTHO05D003218 6.2e-18 94.7 117 45.3
ECA247G3236 Erigeron canadensis HOM05D002989 ORTHO05D003218 8.1e-18 94.4 102 49.0
Solyc09g065650.3 Solanum lycopersicum HOM05D002989 ORTHO05D003218 8.1e-18 94.4 102 49.0
Sopen09g027400 Solanum pennellii HOM05D002989 ORTHO05D003218 8.1e-18 94.4 102 49.0
CANSAT25G2944 Cannabis sativa HOM05D002989 ORTHO05D003218 1.1e-17 94.0 90 52.2
FAN20G1777 Fragaria x ananassa HOM05D002989 ORTHO05D003218 1.1e-17 94.0 94 53.2
TPR.G25694 Trifolium pratense HOM05D002989 ORTHO05D003218 1.1e-17 94.0 110 46.4
Medtr1g071370 Medicago truncatula HOM05D002989 ORTHO05D003218 1.4e-17 93.6 90 51.1
Actinidia24922 Actinidia chinensis HOM05D001150 ORTHO05D003218 1.8e-17 93.2 112 47.3
CAN.G380.7 Capsicum annuum HOM05D002989 ORTHO05D003218 1.8e-17 93.2 117 45.3
Sc17g0001200 Simmondsia chinensis HOM05D002989 ORTHO05D003218 1.8e-17 93.2 110 45.5
arahy.Tifrunner.gnm1.ann1.T1HKRS Arachis hypogaea HOM05D002989 ORTHO05D003218 2.4e-17 92.8 93 48.4
Duzib211G0299 Durio zibethinus HOM05D002989 ORTHO05D003218 2.4e-17 92.8 94 52.1
Gohir.D08G055500 Gossypium hirsutum HOM05D002989 ORTHO05D003218 2.4e-17 92.8 102 49.0
Lsat_1_v5_gn_9_7440 Lactuca sativa HOM05D002989 ORTHO05D003218 2.4e-17 92.8 100 50.0
PSO832G1612 Papaver somniferum HOM05D002989 ORTHO05D003218 3.1e-17 92.4 110 46.4
Ca_09731_v3 Cicer arietinum L. HOM05D002989 ORTHO05D003218 4.0e-17 92.0 90 50.0
Gohir.A08G045205 Gossypium hirsutum HOM05D002989 ORTHO05D003218 4.0e-17 92.0 102 49.0
Gorai.004G056100 Gossypium raimondii HOM05D002989 ORTHO05D003218 4.0e-17 92.0 102 48.0
Rhsim01G0272200 Rhododendron simsii HOM05D002989 ORTHO05D003218 4.0e-17 92.0 101 49.5
VMungo0720G0909 Vigna mungo HOM05D000002 ORTHO05D000001 4.0e-17 92.0 117 41.9
Psat6g059080 Pisum sativum HOM05D002989 ORTHO05D003218 5.3e-17 91.7 90 50.0
CSS0037859 Camellia sinensis var. sinensis HOM05D002989 ORTHO05D003218 6.9e-17 91.3 110 47.3
Lalb_Chr21g0306351 Lupinus albus HOM05D002989 ORTHO05D003218 6.9e-17 91.3 90 51.1
Nn1g02454 Nelumbo nucifera HOM05D002989 ORTHO05D003218 9.0e-17 90.9 90 52.2
Phvul.007G174700 Phaseolus vulgaris HOM05D002989 ORTHO05D003218 1.5e-16 90.1 90 50.0
ATR0665G490 Amborella trichopoda HOM05D002989 ORTHO05D003218 4.5e-16 88.6 90 52.2
TAR365G0943 Trochodendron aralioides HOM05D002989 ORTHO05D003218 4.5e-16 88.6 97 48.5
unitig_0.g139 Utricularia gibba HOM05D002989 ORTHO05D003218 7.6e-16 87.8 110 43.6
Mapoly0019s0132 Marchantia polymorpha HOM05D002989 ORTHO05D003218 1.3e-15 87.0 94 46.8
Nitab4.5_0000459g0030 Nicotiana tabacum HOM05D002989 ORTHO05D003218 3.8e-15 85.5 122 42.6
CBR_g2972 Chara braunii HOM05D002989 ORTHO05D003218 2.4e-14 82.8 90 48.9
Pp3c16_17820 Physcomitrium patens HOM05D002989 ORTHO05D003218 3.2e-14 82.4 112 38.4
Hund02863 Selenicereus undatus HOM05D002989 ORTHO05D003218 9.3e-14 80.9 110 40.9
Os11g0586100 Oryza sativa ssp. japonica HOM05D002989 ORTHO05D003218 1.6e-13 80.1 90 47.8
EL10Ac5g10497 Beta vulgaris HOM05D002989 ORTHO05D003218 2.1e-13 79.7 110 40.9
SMO238G0016 Selaginella moellendorffii HOM05D002989 ORTHO05D003218 1.0e-12 77.4 111 38.7
AagrBONN_evm.TU.Sc2ySwM_117.2433 Anthoceros agrestis HOM05D002989 ORTHO05D003218 1.8e-12 76.6 92 41.3
Ah.11g050240 Amaranthus hybridus HOM05D002989 ORTHO05D003218 5.1e-12 75.1 134 36.6
Aa31LG10G17180 Aethionema arabicum HOM05D002989 ORTHO05D003218 1.8e-09 66.6 42 76.2
Glyma.02G144500 Glycine max HOM05D002989 ORTHO05D003218 4.5e-08 62.0 38 65.8
Cre01.g008150 Chlamydomonas reinhardtii HOM05D002989 ORTHO05D003218 5.8e-08 61.6 87 35.6
HPP92_020348 Vanilla planifolia HOM05D002989 ORTHO05D003218 1.7e-07 60.1 88 40.9
Zm00001eb114510 Zea mays HOM05D002989 ORTHO05D003218 4.9e-07 58.5 38 63.2
Zm00001eb114650 Zea mays HOM05D002989 ORTHO05D003218 4.9e-07 58.5 38 63.2
Zm00001eb114680 Zea mays HOM05D002989 ORTHO05D003218 8.4e-07 57.8 38 63.2


User provided reference genes

Program Settings