Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G52590 Arabidopsis lyrata HOM05D007224 ORTHO05D009169 2.5e-139 498.8 258 100.0
AT1G44920 Arabidopsis thaliana HOM05D007224 ORTHO05D009169 2.3e-129 465.7 258 93.4
Carub.0001s3542 Capsella rubella HOM05D007224 ORTHO05D009169 2.1e-122 442.6 260 90.0
Sp1g33790 Schrenkiella parvula HOM05D007224 ORTHO05D009169 3.5e-109 398.7 263 83.3
Thhalv10011734m.g Eutrema salsugineum HOM05D007224 ORTHO05D009169 1.5e-107 393.3 262 81.3
CARHR036150 Cardamine hirsuta HOM05D007224 ORTHO05D009169 1.6e-106 389.8 258 81.0
BcaC08g42889 Brassica carinata HOM05D007224 ORTHO05D009169 1.4e-105 386.7 262 80.5
A10p07160 Brassica napus HOM05D007224 ORTHO05D009169 4.4e-104 381.7 263 80.2
BolC6t35243H Brassica oleracea HOM05D007224 ORTHO05D009169 7.8e-101 370.9 280 74.6
C06p01100 Brassica napus HOM05D007224 ORTHO05D009169 3.9e-100 368.6 253 79.4
THA.LOC104799830 Tarenaya hassleriana HOM05D007224 ORTHO05D009169 9.5e-99 364.0 273 74.0
BcaB07g33899 Brassica carinata HOM05D007224 ORTHO05D009169 1.8e-97 359.8 260 74.6
BraA10t42965Z Brassica rapa HOM05D007224 ORTHO05D009169 2.0e-96 356.3 279 73.1
Aa31LG7G10090 Aethionema arabicum HOM05D007224 ORTHO05D009169 1.8e-89 333.2 291 65.6
GSVIVG01009296001 Vitis vinifera HOM05D007224 ORTHO05D009169 2.2e-79 299.7 262 60.3
Gohir.A06G026200 Gossypium hirsutum HOM05D007224 ORTHO05D009169 1.4e-78 297.0 265 59.2
Gorai.010G028000 Gossypium raimondii HOM05D007224 ORTHO05D009169 1.4e-78 297.0 271 58.3
Gohir.D06G023300 Gossypium hirsutum HOM05D007224 ORTHO05D009169 3.2e-78 295.8 273 57.5
TWI12G0175 Tripterygium wilfordii HOM05D007224 ORTHO05D009169 3.2e-78 295.8 225 68.4
PSO541G3785 Papaver somniferum HOM05D007224 ORTHO05D009169 1.2e-77 293.9 261 60.5
Ciclev10002194m.g Citrus clementina HOM05D007224 ORTHO05D009169 1.6e-77 293.5 221 69.7
Duzib116G0584 Durio zibethinus HOM05D007224 ORTHO05D009169 1.6e-77 293.5 265 59.6
Atru.chr13.874 Acer truncatum HOM05D007224 ORTHO05D009169 7.8e-77 291.2 257 61.1
TWI56G1112 Tripterygium wilfordii HOM05D007224 ORTHO05D009169 1.0e-76 290.8 227 67.8
PSO675G4824 Papaver somniferum HOM05D007224 ORTHO05D009169 1.3e-76 290.4 187 77.5
CsaV3_2G025920 Cucumis sativus L. HOM05D007224 ORTHO05D009169 1.7e-76 290.0 262 59.5
MELO3C010785.2 Cucumis melo HOM05D007224 ORTHO05D009169 2.5e-75 286.2 260 59.2
RcHm_v2.0_Chr6g0310081 Rosa chinensis HOM05D007224 ORTHO05D009169 9.6e-75 284.3 273 57.9
Ca_06981_v3 Cicer arietinum L. HOM05D007224 ORTHO05D009169 6.2e-74 281.6 212 66.5
CiPaw.07G171700 Carya illinoinensis HOM05D007224 ORTHO05D009169 3.1e-73 279.3 263 60.5
Sc26g0004240 Simmondsia chinensis HOM05D007224 ORTHO05D009169 6.9e-73 278.1 227 64.3
MD15G1064800 Malus domestica HOM05D007224 ORTHO05D009169 4.4e-72 275.4 278 55.4
ClCG08G016710 Citrullus lanatus HOM05D007224 ORTHO05D009169 2.9e-71 272.7 250 58.0
MD08G1077300 Malus domestica HOM05D007224 ORTHO05D009169 2.9e-71 272.7 275 55.6
Cfa013733 Carpinus fangiana HOM05D007224 ORTHO05D009169 3.8e-71 272.3 259 58.3
Lj5g0004917 Lotus japonicus HOM05D007224 ORTHO05D009169 4.9e-71 271.9 259 58.3
Hund05274 Selenicereus undatus HOM05D007224 ORTHO05D009169 6.4e-71 271.6 283 55.1
CDE04G2175 Ceratophyllum demersum HOM05D007224 ORTHO05D009169 8.4e-71 271.2 264 54.9
TPR.G13169 Trifolium pratense HOM05D007224 ORTHO05D009169 8.4e-71 271.2 216 63.0
Nitab4.5_0001494g0030 Nicotiana tabacum HOM05D007224 ORTHO05D009169 1.9e-70 270.0 189 69.8
vmacro21415 Vaccinium macrocarpon HOM05D007224 ORTHO05D009169 4.2e-70 268.9 218 67.9
FvH4_2g32650 Fragaria vesca HOM05D007224 ORTHO05D009169 5.4e-70 268.5 182 73.6
CANSAT56G0920 Cannabis sativa HOM05D007224 ORTHO05D009169 1.6e-69 266.9 271 56.1
Psat6g017040 Pisum sativum HOM05D007224 ORTHO05D009169 1.6e-69 266.9 247 57.1
Thecc.08G084200 Theobroma cacao HOM05D007224 ORTHO05D009169 2.1e-69 266.5 270 55.9
Solyc04g077500.4 Solanum lycopersicum HOM05D007224 ORTHO05D009169 2.7e-69 266.2 204 65.7
Actinidia10224 Actinidia chinensis HOM05D007224 ORTHO05D009169 4.6e-69 265.4 192 70.3
Sopen04g031100 Solanum pennellii HOM05D007224 ORTHO05D009169 1.0e-68 264.2 204 65.2
PGSC0003DMG400004920 Solanum tuberosum HOM05D007224 ORTHO05D009169 1.0e-68 264.2 190 68.4
CSS0049759 Camellia sinensis var. sinensis HOM05D007224 ORTHO05D009169 3.0e-68 262.7 224 63.4
Lj4A752T19 Lonicera japonica HOM05D007224 ORTHO05D009169 3.0e-68 262.7 258 55.8
Ah.11g039150 Amaranthus hybridus HOM05D007224 ORTHO05D009169 8.7e-68 261.2 187 69.0
Nn5g30669 Nelumbo nucifera HOM05D007224 ORTHO05D009169 1.5e-67 260.4 259 56.0
FAN27G0962 Fragaria x ananassa HOM05D007224 ORTHO05D009169 3.3e-67 259.2 265 55.1
HanXRQChr04g0110471 Helianthus annuus HOM05D007224 ORTHO05D009169 4.3e-67 258.8 182 68.7
Rhsim06G0064800 Rhododendron simsii HOM05D007224 ORTHO05D009169 4.3e-67 258.8 174 75.3
Potri.002G114900 Populus trichocarpa HOM05D007224 ORTHO05D009169 5.6e-67 258.5 270 54.1
MSTRG.22207 Avicennia marina HOM05D007224 ORTHO05D009169 7.3e-67 258.1 232 60.8
CAN.G1239.16 Capsicum annuum HOM05D007224 ORTHO05D009169 7.3e-67 258.1 268 53.7
TAR628G0831 Trochodendron aralioides HOM05D007224 ORTHO05D009169 9.6e-67 257.7 265 53.2
PGR083G2708 Punica granatum HOM05D007224 ORTHO05D009169 1.3e-66 257.3 182 70.9
DCAR_009866 Daucus carota HOM05D007224 ORTHO05D009169 1.6e-66 256.9 248 56.0
Medtr1g017450 Medicago truncatula HOM05D007224 ORTHO05D009169 2.8e-66 256.1 239 58.2
FAN20G0095 Fragaria x ananassa HOM05D007224 ORTHO05D009169 6.2e-66 255.0 272 52.9
unitig_52.g17426 Utricularia gibba HOM05D007224 ORTHO05D009169 8.1e-66 254.6 224 58.5
Manes.18G049850 Manihot esculenta HOM05D007224 ORTHO05D009169 1.4e-65 253.8 275 55.3
FAN15G3290 Fragaria x ananassa HOM05D007224 ORTHO05D009169 2.4e-65 253.1 203 64.0
VMungo0647G2475 Vigna mungo HOM05D007224 ORTHO05D009169 2.4e-65 253.1 249 57.0
EL10Ac1g02348 Beta vulgaris HOM05D007224 ORTHO05D009169 5.3e-65 251.9 214 60.7
Haze_22381 Corylus avellana HOM05D007224 ORTHO05D009169 5.3e-65 251.9 252 57.5
FAN24G0100 Fragaria x ananassa HOM05D007224 ORTHO05D009169 9.0e-65 251.1 180 69.4
Lalb_Chr22g0355811 Lupinus albus HOM05D007224 ORTHO05D009169 1.2e-64 250.8 212 61.8
Prupe.1G418700 Prunus persica HOM05D007224 ORTHO05D009169 1.5e-64 250.4 274 52.2
Phvul.001G031100 Phaseolus vulgaris HOM05D007224 ORTHO05D009169 3.4e-64 249.2 251 55.0
Dinv44928 Davidia involucrata HOM05D007224 ORTHO05D009169 1.3e-63 247.3 258 54.7
SalBow7G4028 Salvia bowleyana HOM05D007224 ORTHO05D009169 2.9e-63 246.1 213 61.5
Glyma.17G232300 Glycine max HOM05D007224 ORTHO05D009169 1.1e-62 244.2 250 53.2
Cc10_g07670 Coffea canephora HOM05D007224 ORTHO05D009169 1.4e-62 243.8 240 57.1
COL.COLO4_28456 Corchorus olitorius HOM05D007224 ORTHO05D009169 1.2e-61 240.7 235 55.7
ATR0739G089 Amborella trichopoda HOM05D007224 ORTHO05D009169 4.6e-61 238.8 204 59.8
MBI16_g06074_MAGBIO Magnolia biondii HOM05D007224 ORTHO05D009169 6.0e-61 238.4 248 52.4
Lsat_1_v5_gn_0_47281 Lactuca sativa HOM05D007224 ORTHO05D009169 7.9e-61 238.0 235 53.2
Aqoxy6G02448 Aquilegia oxysepala HOM05D007224 ORTHO05D009169 3.0e-60 236.1 183 65.0
arahy.Tifrunner.gnm1.ann1.TQ0B6U Arachis hypogaea HOM05D007224 ORTHO05D009169 3.0e-60 236.1 224 55.8
Peaxi162Scf01161g00120 Petunia axillaris HOM05D007224 ORTHO05D009169 1.9e-59 233.4 268 49.6
Migut.C00453 Erythranthe guttata HOM05D007224 ORTHO05D009169 2.5e-59 233.0 231 55.4
Zm00001eb056020 Zea mays HOM05D007224 ORTHO05D009169 2.1e-58 229.9 267 48.7
HPP92_007712 Vanilla planifolia HOM05D007224 ORTHO05D009169 2.8e-58 229.6 269 50.6
SGA_v2.0_scaffold238G43907 Striga asiatica HOM05D007224 ORTHO05D009169 1.4e-57 227.3 243 52.7
Sabra02G0090900 Salix brachista HOM05D007224 ORTHO05D009169 1.2e-56 224.2 317 44.2
Nitab4.5_0010252g0010 Nicotiana tabacum HOM05D007224 ORTHO05D009169 2.6e-56 223.0 178 62.4
Os03g0729100 Oryza sativa ssp. japonica HOM05D007224 ORTHO05D009169 5.5e-54 215.3 200 55.5
arahy.Tifrunner.gnm1.ann1.XZQ8AB Arachis hypogaea HOM05D007224 ORTHO05D009169 8.2e-50 201.4 173 59.0
ECA232G4225 Erigeron canadensis HOM05D007224 ORTHO05D009169 1.4e-49 200.7 138 67.4
SMO147G0155 Selaginella moellendorffii HOM05D007224 ORTHO05D009169 7.2e-46 188.3 184 51.1
Mapoly0039s0075 Marchantia polymorpha HOM05D007224 ORTHO05D009169 1.6e-45 187.2 196 50.0
Actinidia19293 Actinidia chinensis HOM05D007224 ORTHO05D009169 3.5e-45 186.0 130 73.8
CDE07G0245 Ceratophyllum demersum HOM05D007224 ORTHO05D009169 1.8e-44 183.7 212 50.5
Pp3c6_15140 Physcomitrium patens HOM05D007224 ORTHO05D009169 8.7e-44 181.4 208 47.6
Sed0020426 Sechium edule HOM05D007224 ORTHO05D009169 4.1e-41 172.6 190 52.1
CBR_g45556 Chara braunii HOM05D000019 ORTHO05D000002 5.9e-40 168.7 182 49.5
Haze_22389 Corylus avellana HOM05D007224 ORTHO05D009169 5.0e-39 165.6 189 54.5
Cpa.g.sc2059.2 Carica papaya HOM05D007224 ORTHO05D009169 2.9e-31 139.8 162 51.9
AUR62024535 Chenopodium quinoa HOM05D007224 ORTHO05D009169 2.5e-30 136.7 84 78.6
AUR62033890 Chenopodium quinoa HOM05D007224 ORTHO05D009169 7.2e-30 135.2 127 58.3
Cre13.g569250 Chlamydomonas reinhardtii HOM05D007224 ORTHO05D009169 2.7e-29 133.3 205 41.0
Glyma.14G089100 Glycine max HOM05D007224 ORTHO05D009169 1.3e-26 124.4 92 65.2
MCO05G240 Micromonas commoda HOM05D007224 ORTHO05D009169 1.0e-20 104.8 152 41.4
Zm00001eb035950 Zea mays HOM05D007224 ORTHO05D009169 1.1e-19 101.3 97 53.6
Zm00001eb141580 Zea mays HOM05D007224 ORTHO05D445531 2.5e-14 83.6 95 49.5
Sabra08G0162900 Salix brachista HOM05D003359 ORTHO05D007088 7.5e-11 72.0 42 83.3


User provided reference genes

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