Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G51850 Arabidopsis lyrata HOM05D001093 ORTHO05D000743 5.4e-51 204.1 111 100.0
AL1G51860 Arabidopsis lyrata HOM05D001093 ORTHO05D000743 3.6e-39 164.9 80 93.8
AT1G43770 Arabidopsis thaliana HOM05D001093 ORTHO05D000743 6.7e-33 144.1 73 84.9
Carub.0001s3475 Capsella rubella HOM05D001093 ORTHO05D000743 6.7e-33 144.1 74 83.8
CARHR035520 Cardamine hirsuta HOM05D001093 ORTHO05D000743 6.7e-25 117.5 72 63.9
Aa31LG6G9690 Aethionema arabicum HOM05D001093 ORTHO05D000743 6.9e-22 107.5 74 63.5
Sp1g32760 Schrenkiella parvula HOM05D001093 ORTHO05D000743 1.5e-21 106.3 74 64.9
THA.LOC104806851 Tarenaya hassleriana HOM05D001093 ORTHO05D000743 1.2e-18 96.7 72 55.6
BcaC08g43143 Brassica carinata HOM05D001093 ORTHO05D000743 2.1e-18 95.9 63 60.3
C06p04250 Brassica napus HOM05D001093 ORTHO05D000743 2.1e-18 95.9 63 60.3
BolC6t35549H Brassica oleracea HOM05D001093 ORTHO05D000743 2.1e-18 95.9 63 60.3
BraA06t23590Z Brassica rapa HOM05D001093 ORTHO05D000743 2.1e-18 95.9 63 60.3
BcaB07g33670 Brassica carinata HOM05D001093 ORTHO05D000743 3.3e-16 88.6 63 60.3
Manes.18G089400 Manihot esculenta HOM05D001093 ORTHO05D000743 4.5e-13 78.2 50 56.0
Haze_17729 Corylus avellana HOM05D000026 ORTHO05D001292 1.3e-12 76.6 73 41.1
Cpa.g.sc49.46 Carica papaya HOM05D001093 ORTHO05D000743 2.2e-12 75.9 49 51.0
MD05G1018500 Malus domestica HOM05D001093 ORTHO05D000743 2.2e-12 75.9 58 50.0
Medtr6g044600 Medicago truncatula HOM05D001093 ORTHO05D000743 2.9e-12 75.5 62 51.6
Cpa.g.sc49.44 Carica papaya HOM05D001093 ORTHO05D000743 8.5e-12 73.9 49 51.0
CsaV3_7G024810 Cucumis sativus L. HOM05D001093 ORTHO05D000743 1.1e-11 73.6 59 47.5
Migut.C01024 Erythranthe guttata HOM05D001093 ORTHO05D000743 3.2e-11 72.0 67 37.3
Sabra05G0144700 Salix brachista HOM05D001093 ORTHO05D000743 3.2e-11 72.0 58 39.7
QL02p024630 Quercus lobata HOM05D001093 ORTHO05D000743 4.2e-11 71.6 49 49.0
Sed0006161 Sechium edule HOM05D001093 ORTHO05D000743 4.2e-11 71.6 50 54.0
Potri.005G189400 Populus trichocarpa HOM05D001093 ORTHO05D000743 5.5e-11 71.2 88 36.4
MD10G1018200 Malus domestica HOM05D001093 ORTHO05D000743 7.2e-11 70.9 54 50.0
PGR042G0583 Punica granatum HOM05D001093 ORTHO05D000743 7.2e-11 70.9 52 48.1
Medtr5g098320 Medicago truncatula HOM05D001093 ORTHO05D000743 9.4e-11 70.5 63 50.8
MELO3C024101.2 Cucumis melo HOM05D001093 ORTHO05D000743 1.6e-10 69.7 54 48.1
Thecc.08G147000 Theobroma cacao HOM05D001093 ORTHO05D000743 1.6e-10 69.7 49 49.0
Psat1g092360 Pisum sativum HOM05D001093 ORTHO05D000743 2.1e-10 69.3 53 50.9
Nitab4.5_0004105g0040 Nicotiana tabacum HOM05D001093 ORTHO05D000743 2.7e-10 68.9 65 43.1
arahy.Tifrunner.gnm1.ann1.UWTZ29 Arachis hypogaea HOM05D001093 ORTHO05D000743 4.6e-10 68.2 68 42.6
Glyma.09G125400 Glycine max HOM05D001093 ORTHO05D000743 4.6e-10 68.2 50 52.0
Lsat_1_v5_gn_8_117260 Lactuca sativa HOM05D001093 ORTHO05D000743 4.6e-10 68.2 48 54.2
TWI60G1406 Tripterygium wilfordii HOM05D001093 ORTHO05D000743 4.6e-10 68.2 58 48.3
Duzib116G0600 Durio zibethinus HOM05D001093 ORTHO05D000743 6.1e-10 67.8 60 41.7
Medtr1g099270 Medicago truncatula HOM05D001093 ORTHO05D000743 6.1e-10 67.8 49 53.1
TPR.G36655 Trifolium pratense HOM05D001093 ORTHO05D000743 6.1e-10 67.8 82 41.5
TPR.G3629 Trifolium pratense HOM05D001093 ORTHO05D000743 7.9e-10 67.4 80 41.2
CSS0005802 Camellia sinensis var. sinensis HOM05D001093 ORTHO05D000743 1.4e-09 66.6 49 49.0
CSS0044048 Camellia sinensis var. sinensis HOM05D001093 ORTHO05D000743 1.4e-09 66.6 49 49.0
Ca_19334_v3 Cicer arietinum L. HOM05D001093 ORTHO05D000743 1.4e-09 66.6 55 47.3
Migut.N03229 Erythranthe guttata HOM05D001093 ORTHO05D000743 1.4e-09 66.6 72 36.1
Psat0s667g0160 Pisum sativum HOM05D001093 ORTHO05D000743 1.4e-09 66.6 56 48.2
TPR.G37844 Trifolium pratense HOM05D001093 ORTHO05D000743 1.4e-09 66.6 59 45.8
Ciclev10000763m.g Citrus clementina HOM05D001093 ORTHO05D000743 1.8e-09 66.2 90 35.6
Dinv41107 Davidia involucrata HOM05D001093 ORTHO05D000743 1.8e-09 66.2 48 50.0
Glyma.06G230000 Glycine max HOM05D001093 ORTHO05D000743 1.8e-09 66.2 50 52.0
Glyma.10G227100 Glycine max HOM05D001093 ORTHO05D000743 1.8e-09 66.2 48 56.2
Glyma.20G165200 Glycine max HOM05D001093 ORTHO05D000743 1.8e-09 66.2 48 56.2
Lj7A367T45 Lonicera japonica HOM05D001093 ORTHO05D000743 1.8e-09 66.2 49 46.9
Nn1g06166 Nelumbo nucifera HOM05D001093 ORTHO05D000743 1.8e-09 66.2 68 36.8
Actinidia01147 Actinidia chinensis HOM05D001093 ORTHO05D000743 2.3e-09 65.9 48 52.1
HanXRQChr09g0258361 Helianthus annuus HOM05D001093 ORTHO05D000743 2.3e-09 65.9 49 49.0
Psat6g194360 Pisum sativum HOM05D001093 ORTHO05D000743 2.3e-09 65.9 49 51.0
Atru.chr13.2237 Acer truncatum HOM05D001093 ORTHO05D000743 3.0e-09 65.5 58 36.2
arahy.Tifrunner.gnm1.ann1.R6W0QQ Arachis hypogaea HOM05D001093 ORTHO05D000743 3.0e-09 65.5 68 38.2
Lj2g0008242 Lotus japonicus HOM05D001093 ORTHO05D000743 3.0e-09 65.5 49 49.0
Nitab4.5_0013462g0030 Nicotiana tabacum HOM05D001093 ORTHO05D000743 3.0e-09 65.5 49 46.9
Phvul.007G078100 Phaseolus vulgaris HOM05D001093 ORTHO05D000743 3.0e-09 65.5 48 54.2
Peaxi162Scf01184g00141 Petunia axillaris HOM05D001093 ORTHO05D000743 5.1e-09 64.7 52 44.2
PGSC0003DMG400032558 Solanum tuberosum HOM05D001093 ORTHO05D000743 5.1e-09 64.7 49 44.9
TPR.G7732 Trifolium pratense HOM05D001093 ORTHO05D000743 5.1e-09 64.7 49 51.0
Ca_10694_v3 Cicer arietinum L. HOM05D001093 ORTHO05D000743 6.7e-09 64.3 49 49.0
Medtr6g034375 Medicago truncatula HOM05D001093 ORTHO05D000743 6.7e-09 64.3 78 43.6
Psat1g092320 Pisum sativum HOM05D001093 ORTHO05D000743 6.7e-09 64.3 75 41.3
Solyc04g009400.4 Solanum lycopersicum HOM05D001093 ORTHO05D000743 8.8e-09 63.9 49 46.9
Sopen04g004530 Solanum pennellii HOM05D001093 ORTHO05D000743 8.8e-09 63.9 49 46.9
TPR.G39589 Trifolium pratense HOM05D001093 ORTHO05D000743 8.8e-09 63.9 80 42.5
SGA_v2.0_scaffold48G17955 Striga asiatica HOM05D001093 ORTHO05D000743 1.1e-08 63.5 49 42.9
Atru.chr5.93 Acer truncatum HOM05D001093 ORTHO05D000743 1.5e-08 63.2 62 37.1
AUR62041714 Chenopodium quinoa HOM05D001093 ORTHO05D000743 1.5e-08 63.2 59 39.0
DCAR_014418 Daucus carota HOM05D001093 ORTHO05D000743 2.5e-08 62.4 52 48.1
Eucgr.F02722 Eucalyptus grandis HOM05D001093 ORTHO05D000743 2.5e-08 62.4 59 42.4
Lsat_1_v5_gn_3_107161 Lactuca sativa HOM05D001093 ORTHO05D000743 2.5e-08 62.4 48 50.0
Lj2g0007742 Lotus japonicus HOM05D001093 ORTHO05D000743 2.5e-08 62.4 49 49.0
CANSAT25G1318 Cannabis sativa HOM05D001093 ORTHO05D000743 3.3e-08 62.0 48 45.8
Peaxi162Scf00842g00328 Petunia axillaris HOM05D001093 ORTHO05D000743 3.3e-08 62.0 51 43.1
Lalb_Chr06g0161481 Lupinus albus HOM05D001093 ORTHO05D000743 4.3e-08 61.6 89 38.2
Lj5g0005381 Lotus japonicus HOM05D001093 ORTHO05D000743 5.7e-08 61.2 51 49.0
Nn5g28671 Nelumbo nucifera HOM05D001093 ORTHO05D000743 5.7e-08 61.2 52 44.2
ECA236G3128 Erigeron canadensis HOM05D001093 ORTHO05D000743 7.4e-08 60.8 48 50.0
HPP92_004390 Vanilla planifolia HOM05D001093 ORTHO05D000743 7.4e-08 60.8 58 44.8
Ciclev10025832m.g Citrus clementina HOM05D001093 ORTHO05D000743 9.7e-08 60.5 53 39.6
PSO541G4687 Papaver somniferum HOM05D020760 ORTHO05D019682 1.3e-07 60.1 50 42.0
PSO675G3366 Papaver somniferum HOM05D020760 ORTHO05D019682 1.3e-07 60.1 50 42.0
Potri.005G173200 Populus trichocarpa HOM05D001093 ORTHO05D000743 1.3e-07 60.1 63 38.1
ECA232G2941 Erigeron canadensis HOM05D001093 ORTHO05D000743 1.7e-07 59.7 48 43.8
Carub.0001s3474 Capsella rubella HOM05D001093 ORTHO05D000743 2.8e-07 58.9 41 58.5
Sabra05G0130700 Salix brachista HOM05D001093 ORTHO05D000743 2.8e-07 58.9 68 32.4
unitig_749.g13437 Utricularia gibba HOM05D008195 ORTHO05D000743 3.7e-07 58.5 50 48.0
Phvul.004G100400 Phaseolus vulgaris HOM05D001093 ORTHO05D000743 4.8e-07 58.2 45 48.9
Nitab4.5_0004819g0010 Nicotiana tabacum HOM05D001093 ORTHO05D000743 6.3e-07 57.8 54 38.9
Aqoxy6G00388 Aquilegia oxysepala HOM05D001093 ORTHO05D000743 8.2e-07 57.4 51 49.0
Dinv25836 Davidia involucrata HOM05D001093 ORTHO05D000743 8.2e-07 57.4 48 41.7
BcaNung00050 Brassica carinata HOM05D020533 ORTHO05D011195 1.1e-06 57.0 55 43.6
CAN.G4.14 Capsicum annuum HOM05D001093 ORTHO05D000743 1.1e-06 57.0 54 40.7
Hund26716 Selenicereus undatus HOM05D001093 ORTHO05D000743 1.4e-06 56.6 58 37.9
Glyma.04G163100 Glycine max HOM05D007909 ORTHO05D000743 1.8e-06 56.2 67 40.3
RcHm_v2.0_Chr6g0276691 Rosa chinensis HOM05D001093 ORTHO05D000743 1.8e-06 56.2 49 44.9
Sopen04g021630 Solanum pennellii HOM05D001093 ORTHO05D000743 1.8e-06 56.2 52 40.4
FAN11G1971 Fragaria x ananassa HOM05D001093 ORTHO05D000743 3.1e-06 55.5 53 39.6
Medtr2g006220 Medicago truncatula HOM05D001093 ORTHO05D000743 3.1e-06 55.5 91 33.0
Nitab4.5_0000504g0100 Nicotiana tabacum HOM05D001093 ORTHO05D000743 3.1e-06 55.5 52 36.5
Solyc04g009390.2 Solanum lycopersicum HOM05D001093 ORTHO05D000743 3.1e-06 55.5 71 32.4
Sopen04g004510 Solanum pennellii HOM05D001093 ORTHO05D030672 4.1e-06 55.1 52 38.5
Ah.02g121920 Amaranthus hybridus HOM05D001093 ORTHO05D000743 5.3e-06 54.7 48 41.7
BraA01t00935Z Brassica rapa HOM05D001093 ORTHO05D011195 5.3e-06 54.7 52 44.2
Cc10_g14180 Coffea canephora HOM05D001093 ORTHO05D000743 5.3e-06 54.7 53 39.6
Sc02g0004330 Simmondsia chinensis HOM05D001093 ORTHO05D000743 5.3e-06 54.7 72 33.3
CSS0045835 Camellia sinensis var. sinensis HOM05D001093 ORTHO05D000743 6.9e-06 54.3 50 48.0
Dinv11327 Davidia involucrata HOM05D001093 ORTHO05D000743 6.9e-06 54.3 48 43.8
FvH4_3g26810 Fragaria vesca HOM05D001093 ORTHO05D000743 6.9e-06 54.3 49 42.9
BcaC09g51595 Brassica carinata HOM05D001093 ORTHO05D011195 9.1e-06 53.9 48 45.8
BolC1t01130H Brassica oleracea HOM05D020533 ORTHO05D011195 9.1e-06 53.9 48 45.8
Dinv24318 Davidia involucrata HOM05D001093 ORTHO05D000743 9.1e-06 53.9 59 37.3
SalBow6G2465 Salvia bowleyana HOM05D001093 ORTHO05D000743 9.1e-06 53.9 97 28.9


User provided reference genes

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