Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G51480 Arabidopsis lyrata HOM05D006245 ORTHO05D007260 6.7e-152 540.8 306 100.0
AT1G42990 Arabidopsis thaliana HOM05D006245 ORTHO05D007260 7.8e-116 421.0 307 84.4
Carub.0001s3439 Capsella rubella HOM05D006245 ORTHO05D007260 3.2e-109 399.1 317 78.2
CARHR035240 Cardamine hirsuta HOM05D006245 ORTHO05D007260 1.9e-93 346.7 313 67.1
Thhalv10004635m.g Eutrema salsugineum HOM05D006245 ORTHO05D007260 5.6e-82 308.5 322 61.2
Sp1g32200 Schrenkiella parvula HOM05D006245 ORTHO05D007260 7.6e-79 298.1 333 61.0
BcaB04g17767 Brassica carinata HOM05D006245 ORTHO05D007260 2.4e-72 276.6 317 58.7
BcaC07g37450 Brassica carinata HOM05D006245 ORTHO05D007260 4.5e-71 272.3 318 59.4
C08p09220 Brassica napus HOM05D006245 ORTHO05D007260 4.5e-71 272.3 318 59.4
BolC8t47771H Brassica oleracea HOM05D006245 ORTHO05D007260 4.5e-71 272.3 318 59.4
BraA08t32777Z Brassica rapa HOM05D006245 ORTHO05D007260 5.8e-71 271.9 313 58.8
A08p07630 Brassica napus HOM05D006245 ORTHO05D007260 3.8e-70 269.2 313 58.5
Aa31LG6G10010 Aethionema arabicum HOM05D006245 ORTHO05D007260 5.8e-63 245.4 320 53.1
THA.LOC104813184 Tarenaya hassleriana HOM05D006245 ORTHO05D007260 4.5e-47 192.6 351 47.3
Ciclev10002005m.g Citrus clementina HOM05D006245 ORTHO05D007260 2.0e-39 167.2 304 42.8
Gohir.D05G292800 Gossypium hirsutum HOM05D006245 ORTHO05D007260 3.9e-35 152.9 288 42.4
Gorai.009G309200 Gossypium raimondii HOM05D006245 ORTHO05D007260 6.7e-35 152.1 288 42.4
Manes.18G001000 Manihot esculenta HOM05D006245 ORTHO05D007260 4.4e-34 149.4 292 43.8
Cpa.g.sc438.4 Carica papaya HOM05D006245 ORTHO05D007260 1.3e-33 147.9 303 42.9
Cpa.g.c24967.6 Carica papaya HOM05D006245 ORTHO05D007260 1.7e-33 147.5 303 40.3
Gohir.A05G291700 Gossypium hirsutum HOM05D006245 ORTHO05D007260 6.3e-33 145.6 292 41.4
Potri.005G257900 Populus trichocarpa HOM05D006245 ORTHO05D007260 8.2e-33 145.2 298 45.3
Manes.18G005000 Manihot esculenta HOM05D006245 ORTHO05D007260 1.8e-32 144.1 292 43.5
TWI56G0455 Tripterygium wilfordii HOM05D006245 ORTHO05D007260 5.3e-32 142.5 311 41.5
Atru.chr13.34 Acer truncatum HOM05D006245 ORTHO05D007260 7.0e-32 142.1 251 46.6
CsaV3_4G037700 Cucumis sativus L. HOM05D006245 ORTHO05D007260 4.5e-31 139.4 348 37.1
Sed0007375 Sechium edule HOM05D006245 ORTHO05D007260 5.9e-31 139.0 303 37.6
Migut.O00838 Erythranthe guttata HOM05D006245 ORTHO05D007260 2.2e-30 137.1 285 42.8
Thecc.08G098200 Theobroma cacao HOM05D006245 ORTHO05D007260 2.9e-30 136.7 308 39.9
MELO3C017064.2 Cucumis melo HOM05D006245 ORTHO05D007260 6.5e-30 135.6 350 36.6
Actinidia15551 Actinidia chinensis HOM05D006245 ORTHO05D007260 1.5e-29 134.4 309 39.8
Dinv05508 Davidia involucrata HOM05D006245 ORTHO05D007260 3.2e-29 133.3 318 36.5
Migut.N02994 Erythranthe guttata HOM05D006245 ORTHO05D007260 4.2e-29 132.9 300 42.3
Haze_22875 Corylus avellana HOM05D006245 ORTHO05D007260 9.4e-29 131.7 312 43.3
CiPaw.07G131600 Carya illinoinensis HOM05D006245 ORTHO05D007260 2.1e-28 130.6 303 37.6
PGSC0003DMG400010008 Solanum tuberosum HOM05D006245 ORTHO05D007260 2.1e-28 130.6 303 39.3
CANSAT11G2487 Cannabis sativa HOM05D006245 ORTHO05D007260 2.7e-28 130.2 297 36.7
ClCG11G019110 Citrullus lanatus HOM05D006245 ORTHO05D007260 4.7e-28 129.4 347 36.6
FAN04G2011 Fragaria x ananassa HOM05D006245 ORTHO05D007260 4.7e-28 129.4 290 33.8
Sopen04g036530 Solanum pennellii HOM05D006245 ORTHO05D007260 4.7e-28 129.4 291 38.8
TAR381G0633 Trochodendron aralioides HOM05D006245 ORTHO05D007260 6.1e-28 129.0 275 38.5
Cfa014151 Carpinus fangiana HOM05D006245 ORTHO05D007260 8.0e-28 128.6 296 43.9
FAN08G3087 Fragaria x ananassa HOM05D006245 ORTHO05D007260 8.0e-28 128.6 290 34.1
COL.COLO4_03408 Corchorus olitorius HOM05D006245 ORTHO05D007260 1.8e-27 127.5 289 45.3
Solyc04g082890.3 Solanum lycopersicum HOM05D006245 ORTHO05D007260 2.3e-27 127.1 287 38.7
FAN18G3272 Fragaria x ananassa HOM05D006245 ORTHO05D007260 3.0e-27 126.7 290 34.5
TWI36G0521 Tripterygium wilfordii HOM05D006245 ORTHO05D007260 4.0e-27 126.3 291 44.3
PGR031G1027 Punica granatum HOM05D006245 ORTHO05D007260 5.2e-27 125.9 297 44.4
Lsat_1_v5_gn_2_3181 Lactuca sativa HOM05D006245 ORTHO05D007260 6.8e-27 125.6 307 40.1
FvH4_5g26440 Fragaria vesca HOM05D006245 ORTHO05D007260 8.8e-27 125.2 290 34.1
FAN13G0213 Fragaria x ananassa HOM05D006245 ORTHO05D007260 8.8e-27 125.2 290 34.1
RcHm_v2.0_Chr7g0217321 Rosa chinensis HOM05D006245 ORTHO05D007260 1.2e-26 124.8 287 33.4
PGR083G2384 Punica granatum HOM05D006245 ORTHO05D007260 1.5e-26 124.4 294 39.8
CAN.G1330.24 Capsicum annuum HOM05D006245 ORTHO05D007260 2.6e-26 123.6 297 38.4
QL02p016022 Quercus lobata HOM05D006245 ORTHO05D007260 4.4e-26 122.9 301 42.9
Eucgr.F03612 Eucalyptus grandis HOM05D006245 ORTHO05D007260 7.5e-26 122.1 305 43.3
Sc02g0009330 Simmondsia chinensis HOM05D006245 ORTHO05D007260 1.3e-25 121.3 295 40.3
Prupe.5G003000 Prunus persica HOM05D006245 ORTHO05D007260 2.8e-25 120.2 291 41.6
vmacro21743 Vaccinium macrocarpon HOM05D006245 ORTHO05D007260 1.8e-24 117.5 294 36.1
SalBow6G6430 Salvia bowleyana HOM05D006245 ORTHO05D007260 3.1e-24 116.7 305 36.4
Nn6g31596 Nelumbo nucifera HOM05D006245 ORTHO05D007260 9.1e-24 115.2 231 43.7
DCAR_017622 Daucus carota HOM05D006245 ORTHO05D007260 1.2e-23 114.8 308 40.6
Gorai.012G007100 Gossypium raimondii HOM05D006245 ORTHO05D007260 1.0e-22 111.7 275 38.5
Gohir.D04G005900 Gossypium hirsutum HOM05D006245 ORTHO05D007260 1.3e-22 111.3 279 38.4
unitig_8.g4814 Utricularia gibba HOM05D006245 ORTHO05D007260 2.2e-22 110.5 279 39.4
unitig_578.g16243 Utricularia gibba HOM05D006245 ORTHO05D007260 2.9e-22 110.2 300 40.7
Aqoxy6G03039 Aquilegia oxysepala HOM05D006245 ORTHO05D007260 3.8e-22 109.8 156 51.3
ECA248G0813 Erigeron canadensis HOM05D004589 ORTHO05D005848 3.8e-22 109.8 154 48.7
GSVIVG01013443001 Vitis vinifera HOM05D006245 ORTHO05D007260 5.0e-22 109.4 94 66.0
MSTRG.24524 Avicennia marina HOM05D006245 ORTHO05D007260 6.5e-22 109.0 299 35.5
Lj5g0002209 Lotus japonicus HOM05D006245 ORTHO05D007260 8.5e-22 108.6 300 34.3
Hund01813 Selenicereus undatus HOM05D006245 ORTHO05D007260 8.5e-22 108.6 309 36.9
Eucgr.F01824 Eucalyptus grandis HOM05D006245 ORTHO05D007260 1.5e-21 107.8 322 37.6
DCAR_009857 Daucus carota HOM05D006245 ORTHO05D007260 1.9e-21 107.5 149 51.7
Lalb_Chr19g0129191 Lupinus albus HOM05D006245 ORTHO05D007260 1.9e-21 107.5 293 34.5
HanXRQChr14g0427941 Helianthus annuus HOM05D006245 ORTHO05D007260 5.5e-21 105.9 212 47.2
SGA_v2.0_scaffold220G42616 Striga asiatica HOM05D006245 ORTHO05D007260 7.2e-21 105.5 327 36.4
MD06G1002100 Malus domestica HOM05D006245 ORTHO05D007260 1.6e-20 104.4 159 48.4
CiPaw.08G078200 Carya illinoinensis HOM05D006245 ORTHO05D007260 2.1e-20 104.0 298 37.6
EL10Ac1g01844 Beta vulgaris HOM05D006245 ORTHO05D007260 3.6e-20 103.2 282 37.2
Medtr1g050502 Medicago truncatula HOM05D006245 ORTHO05D007260 3.6e-20 103.2 160 44.4
Phvul.007G247600 Phaseolus vulgaris HOM05D006245 ORTHO05D007260 3.6e-20 103.2 312 34.6
MSTRG.22076 Avicennia marina HOM05D006245 ORTHO05D007260 4.7e-20 102.8 306 35.3
arahy.Tifrunner.gnm1.ann1.ZHJ1I0 Arachis hypogaea HOM05D006245 ORTHO05D007260 8.0e-20 102.1 318 34.0
Glyma.02G161100 Glycine max HOM05D006245 ORTHO05D007260 8.0e-20 102.1 305 33.4
PSO675G9277 Papaver somniferum HOM05D006245 ORTHO05D007260 1.4e-19 101.3 265 40.8
Psat6g093400 Pisum sativum HOM05D006245 ORTHO05D007260 1.4e-19 101.3 153 47.1
PSO541G3542 Papaver somniferum HOM05D006245 ORTHO05D007260 4.0e-19 99.8 266 39.5
arahy.Tifrunner.gnm1.ann1.9KRV5K Arachis hypogaea HOM05D006245 ORTHO05D007260 5.2e-19 99.4 319 34.8
Rhsim06G0001900 Rhododendron simsii HOM05D006245 ORTHO05D007260 5.2e-19 99.4 338 32.0
Peaxi162Scf00385g00068 Petunia axillaris HOM05D006245 ORTHO05D007260 8.8e-19 98.6 223 39.5
Duzib106G1614 Durio zibethinus HOM05D006245 ORTHO05D007260 1.5e-18 97.8 214 38.8
Eucgr.G02751 Eucalyptus grandis HOM05D006245 ORTHO05D007260 2.6e-18 97.1 147 46.9
Ah.11g042230 Amaranthus hybridus HOM05D006245 ORTHO05D007260 1.7e-17 94.4 94 60.6
TPR.G10624 Trifolium pratense HOM05D006245 ORTHO05D007260 1.7e-17 94.4 228 37.3
Duzib114G1035 Durio zibethinus HOM05D006245 ORTHO05D007260 2.2e-17 94.0 225 36.4
Sabra05G0199800 Salix brachista HOM05D006245 ORTHO05D007260 1.4e-16 91.3 222 42.8
Cc10_g00180 Coffea canephora HOM05D006245 ORTHO05D007260 4.1e-16 89.7 252 34.5
MBI04_g42540_MAGBIO Magnolia biondii HOM05D006245 ORTHO05D007260 7.0e-16 89.0 298 31.9
ATR0605G375 Amborella trichopoda HOM05D006245 ORTHO05D007260 9.1e-16 88.6 228 36.8
Eucgr.F02193 Eucalyptus grandis HOM05D006245 ORTHO05D007260 9.1e-16 88.6 136 47.1
Eucgr.L02193 Eucalyptus grandis HOM05D006245 ORTHO05D007260 1.2e-15 88.2 96 58.3
HPP92_003836 Vanilla planifolia HOM05D006245 ORTHO05D007260 1.6e-15 87.8 291 32.0
Gohir.A05G409532 Gossypium hirsutum HOM05D006245 ORTHO05D007260 2.0e-15 87.4 127 48.8
Oeu042496.1 Olea europaea HOM05D006245 ORTHO05D007260 5.9e-15 85.9 208 44.7
CSS0018800 Camellia sinensis var. sinensis HOM05D006245 ORTHO05D007260 5.0e-14 82.8 218 37.6
AUR62035186 Chenopodium quinoa HOM05D006245 ORTHO05D007260 6.6e-14 82.4 238 34.9
CDE05G2672 Ceratophyllum demersum HOM05D006245 ORTHO05D007260 8.6e-14 82.0 221 36.2
AUR62041341 Chenopodium quinoa HOM05D006245 ORTHO05D007260 8.6e-14 82.0 240 34.6
Ca_26636_v3 Cicer arietinum L. HOM05D006245 ORTHO05D007260 8.6e-14 82.0 237 35.9
Nitab4.5_0000464g0100 Nicotiana tabacum HOM05D006245 ORTHO05D007260 3.3e-13 80.1 280 38.6
Zm00001eb388050 Zea mays HOM05D006245 ORTHO05D007260 2.1e-12 77.4 292 30.8
VMungo0720G1847 Vigna mungo HOM05D006245 ORTHO05D007260 6.1e-12 75.9 142 42.3
Gorai.006G220700 Gossypium raimondii HOM05D006245 ORTHO05D007260 2.6e-10 70.5 53 64.2
Os06g0622700 Oryza sativa ssp. japonica HOM05D006245 ORTHO05D007260 3.7e-09 66.6 171 35.7
Actinidia17088 Actinidia chinensis HOM05D001218 ORTHO05D004088 4.1e-08 63.2 71 54.9
Gohir.D08G092150 Gossypium hirsutum HOM05D006245 ORTHO05D007260 1.3e-06 58.2 42 69.0
Gorai.004G097700 Gossypium raimondii HOM05D006245 ORTHO05D007260 2.9e-06 57.0 198 31.8
AUR62043321 Chenopodium quinoa HOM05D006245 ORTHO05D007260 3.9e-06 56.6 61 52.5


User provided reference genes

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