Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G50270 Arabidopsis lyrata HOM05D007776 ORTHO05D009812 2.0e-62 242.3 126 100.0
AT1G35430 Arabidopsis thaliana HOM05D007776 ORTHO05D009812 2.2e-56 222.2 126 90.5
Carub.0001s3303 Capsella rubella HOM05D007776 ORTHO05D009812 5.9e-54 214.2 130 88.5
CARHR034200 Cardamine hirsuta HOM05D007776 ORTHO05D009812 5.8e-49 197.6 126 85.7
Sp1g30150 Schrenkiella parvula HOM05D007776 ORTHO05D009812 5.8e-49 197.6 124 82.3
BraA09t38716Z Brassica rapa HOM05D007776 ORTHO05D009812 1.0e-45 186.8 106 84.9
C06p11140 Brassica napus HOM05D007776 ORTHO05D009812 3.0e-45 185.3 106 84.0
BolC6t36249H Brassica oleracea HOM05D007776 ORTHO05D009812 3.0e-45 185.3 106 84.0
A09p31800 Brassica napus HOM05D007776 ORTHO05D009812 5.0e-45 184.5 106 84.0
BcaC08g43737 Brassica carinata HOM05D007776 ORTHO05D009812 6.6e-45 184.1 106 83.0
Aa31LG6G8730 Aethionema arabicum HOM05D007776 ORTHO05D009812 3.3e-44 181.8 136 71.3
Thhalv10001838m.g Eutrema salsugineum HOM05D007776 ORTHO05D009812 6.8e-42 174.1 106 79.2
THA.LOC104806792 Tarenaya hassleriana HOM05D007776 ORTHO05D009812 8.9e-34 147.1 139 61.2
Thhalv10029064m.g Eutrema salsugineum HOM05D007776 ORTHO05D009812 7.1e-31 137.5 136 59.6
CARHR260240 Cardamine hirsuta HOM05D007776 ORTHO05D009812 2.4e-26 122.5 130 55.4
FAN08G2421 Fragaria x ananassa HOM05D007776 ORTHO05D009812 2.0e-25 119.4 122 54.1
BcaC01g04727 Brassica carinata HOM05D007776 ORTHO05D009812 4.4e-25 118.2 134 56.7
CANSAT25G0596 Cannabis sativa HOM05D007776 ORTHO05D009812 7.6e-25 117.5 104 58.7
CiPaw.07G236300 Carya illinoinensis HOM05D007776 ORTHO05D009812 7.6e-25 117.5 101 57.4
CiPaw.05G123100 Carya illinoinensis HOM05D007776 ORTHO05D009812 1.3e-24 116.7 100 55.0
BcaB01g02801 Brassica carinata HOM05D007776 ORTHO05D009812 1.7e-24 116.3 132 53.0
FAN04G0521 Fragaria x ananassa HOM05D007776 ORTHO05D009812 2.2e-24 115.9 122 52.5
FAN04G1877 Fragaria x ananassa HOM05D007776 ORTHO05D009812 2.2e-24 115.9 122 52.5
FAN18G1270 Fragaria x ananassa HOM05D007776 ORTHO05D009812 2.9e-24 115.5 126 55.6
C03p34420 Brassica napus HOM05D007776 ORTHO05D009812 4.9e-24 114.8 134 56.0
BolC3t15751H Brassica oleracea HOM05D007776 ORTHO05D009812 4.9e-24 114.8 134 56.0
Manes.02G198100 Manihot esculenta HOM05D007776 ORTHO05D009812 6.4e-24 114.4 129 52.7
FvH4_5g31870 Fragaria vesca HOM05D007776 ORTHO05D009812 8.4e-24 114.0 122 51.6
Sp6g08370 Schrenkiella parvula HOM05D007776 ORTHO05D009812 8.4e-24 114.0 137 51.8
Prupe.1G555000 Prunus persica HOM05D007776 ORTHO05D009812 1.4e-23 113.2 101 59.4
TWI59G0674 Tripterygium wilfordii HOM05D007776 ORTHO05D009812 1.4e-23 113.2 101 62.4
A03p28480 Brassica napus HOM05D007776 ORTHO05D009812 5.4e-23 111.3 134 56.0
RcHm_v2.0_Chr7g0227891 Rosa chinensis HOM05D007776 ORTHO05D009812 1.2e-22 110.2 124 54.0
AL6G42920 Arabidopsis lyrata HOM05D007776 ORTHO05D009812 1.6e-22 109.8 134 53.7
BraA03t12053Z Brassica rapa HOM05D007776 ORTHO05D009812 1.6e-22 109.8 134 55.2
Gohir.D05G288000 Gossypium hirsutum HOM05D007776 ORTHO05D009812 4.6e-22 108.2 129 52.7
Gorai.009G303100 Gossypium raimondii HOM05D007776 ORTHO05D009812 4.6e-22 108.2 129 52.7
MD15G1406800 Malus domestica HOM05D007776 ORTHO05D009812 6.0e-22 107.8 107 51.4
Ciclev10002690m.g Citrus clementina HOM05D007776 ORTHO05D009812 7.8e-22 107.5 119 52.1
Potri.013G107300 Populus trichocarpa HOM05D007776 ORTHO05D009812 8.7e-21 104.0 107 56.1
TWI14G0313 Tripterygium wilfordii HOM05D007776 ORTHO05D009812 8.7e-21 104.0 99 61.6
Ca_14480_v3 Cicer arietinum L. HOM05D007776 ORTHO05D009812 1.9e-20 102.8 103 50.5
Gohir.A05G287000 Gossypium hirsutum HOM05D007776 ORTHO05D009812 2.5e-20 102.4 128 51.6
Psat5g210040 Pisum sativum HOM05D007776 ORTHO05D009812 3.3e-20 102.1 120 45.0
Sed0008767 Sechium edule HOM05D007776 ORTHO05D009812 5.6e-20 101.3 107 52.3
Medtr0045s0130 Medicago truncatula HOM05D007776 ORTHO05D009812 7.3e-20 100.9 102 54.9
AT4G09170 Arabidopsis thaliana HOM05D007776 ORTHO05D009812 2.8e-19 99.0 134 50.0
Sabra13G0092600 Salix brachista HOM05D007776 ORTHO05D009812 6.2e-19 97.8 128 50.0
Duzib177G0943 Durio zibethinus HOM05D007776 ORTHO05D009812 8.1e-19 97.4 107 50.5
Haze_21304 Corylus avellana HOM05D007776 ORTHO05D009812 2.4e-18 95.9 100 51.0
Nn5g27525 Nelumbo nucifera HOM05D007776 ORTHO05D009812 2.4e-18 95.9 104 50.0
VMungo1080G1686 Vigna mungo HOM05D007776 ORTHO05D009812 2.4e-18 95.9 100 52.0
Cfa012949 Carpinus fangiana HOM05D007776 ORTHO05D009812 4.0e-18 95.1 100 52.0
PGR042G2621 Punica granatum HOM05D007776 ORTHO05D009812 4.0e-18 95.1 110 51.8
Lalb_Chr25g0282901 Lupinus albus HOM05D007776 ORTHO05D009812 6.9e-18 94.4 100 54.0
Sabra19G0091100 Salix brachista HOM05D007776 ORTHO05D009812 6.9e-18 94.4 102 55.9
Lj3g0020626 Lotus japonicus HOM05D007776 ORTHO05D009812 2.6e-17 92.4 99 50.5
Dinv41753 Davidia involucrata HOM05D000238 ORTHO05D002999 4.4e-17 91.7 103 54.4
TPR.G27845 Trifolium pratense HOM05D000479 ORTHO05D009812 2.2e-16 89.4 103 49.5
Potri.019G079800 Populus trichocarpa HOM05D007776 ORTHO05D009812 2.9e-16 89.0 108 52.8
Duzib116G0238 Durio zibethinus HOM05D007776 ORTHO05D009812 4.9e-16 88.2 127 43.3
ClCG11G008540 Citrullus lanatus HOM05D007776 ORTHO05D009812 2.4e-15 85.9 109 47.7
Phvul.005G023800 Phaseolus vulgaris HOM05D007776 ORTHO05D009812 1.2e-14 83.6 100 46.0
Thecc.08G190700 Theobroma cacao HOM05D007776 ORTHO05D009812 1.6e-14 83.2 134 40.3
Cpa.g.sc507.3 Carica papaya HOM05D007776 ORTHO05D009812 4.6e-14 81.6 115 42.6
Glyma.15G276200 Glycine max HOM05D007776 ORTHO05D009812 1.3e-13 80.1 81 55.6
PGSC0003DMG400006837 Solanum tuberosum HOM05D007776 ORTHO05D009812 3.9e-13 78.6 106 47.2
Glyma.10G090400 Glycine max HOM05D007776 ORTHO05D009812 8.7e-13 77.4 101 47.5
QL02p026198 Quercus lobata HOM05D007776 ORTHO05D009812 4.3e-12 75.1 100 42.0
TAR628G0395 Trochodendron aralioides HOM05D007776 ORTHO05D009812 1.6e-11 73.2 103 43.7
Ah.05g178510 Amaranthus hybridus HOM05D007776 ORTHO05D009812 2.1e-11 72.8 130 40.8
Sopen01g034790 Solanum pennellii HOM05D007776 ORTHO05D009812 2.8e-11 72.4 108 47.2
Migut.C01313 Erythranthe guttata HOM05D007776 ORTHO05D009812 3.6e-11 72.0 107 43.9
Solyc01g087860.2 Solanum lycopersicum HOM05D007776 ORTHO05D009812 3.6e-11 72.0 111 46.8
MD08G1218400 Malus domestica HOM05D007776 ORTHO05D009812 1.4e-10 70.1 79 49.4
CSS0049282 Camellia sinensis var. sinensis HOM05D007776 ORTHO05D009812 2.4e-10 69.3 104 45.2
unitig_46.g17995 Utricularia gibba HOM05D007776 ORTHO05D009812 2.4e-10 69.3 91 39.6
EL10Ac1g00128 Beta vulgaris HOM05D007776 ORTHO05D009812 1.2e-09 67.0 122 37.7
Rhsim12G0006900 Rhododendron simsii HOM05D007776 ORTHO05D009812 4.5e-09 65.1 92 46.7
Cc10_g10000 Coffea canephora HOM05D007776 ORTHO05D009812 2.4e-07 59.3 92 40.2
COL.COLO4_25869 Corchorus olitorius HOM05D007776 ORTHO05D009812 5.5e-07 58.2 41 63.4
HanXRQChr05g0130261 Helianthus annuus HOM05D007776 ORTHO05D009812 7.1e-07 57.8 93 40.9
unitig_747.g21557 Utricularia gibba HOM05D007776 ORTHO05D009812 9.3e-07 57.4 87 40.2
SalBow7G1484 Salvia bowleyana HOM05D007776 ORTHO05D009812 2.7e-06 55.8 88 45.5


User provided reference genes

Program Settings