Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G50030 Arabidopsis lyrata HOM05D003510 ORTHO05D004144 6.0e-58 227.3 111 100.0
CARHR060960 Cardamine hirsuta HOM05D003510 ORTHO05D004144 6.6e-41 170.6 103 81.6
AL2G27110 Arabidopsis lyrata HOM05D003510 ORTHO05D004144 8.7e-41 170.2 109 78.0
AT1G35290 Arabidopsis thaliana HOM05D003510 ORTHO05D004144 1.9e-40 169.1 107 73.8
Sp1g30110 Schrenkiella parvula HOM05D003510 ORTHO05D004144 9.6e-40 166.8 107 72.9
AL1G49960 Arabidopsis lyrata HOM05D003510 ORTHO05D004144 1.6e-39 166.0 107 77.6
Carub.0001s3288 Capsella rubella HOM05D003510 ORTHO05D004144 1.8e-38 162.5 107 72.0
Sp5g23330 Schrenkiella parvula HOM05D003510 ORTHO05D004144 4.0e-38 161.4 119 68.9
Carub.0001s3294 Capsella rubella HOM05D003510 ORTHO05D004144 1.2e-37 159.8 102 75.5
Carub.0002s1476 Capsella rubella HOM05D003510 ORTHO05D004144 1.2e-37 159.8 110 74.5
AT1G68260 Arabidopsis thaliana HOM05D003510 ORTHO05D004144 9.9e-37 156.8 106 75.5
CARHR220110 Cardamine hirsuta HOM05D003510 ORTHO05D004144 4.9e-36 154.5 107 70.1
BcaC08g46259 Brassica carinata HOM05D003510 ORTHO05D004144 6.4e-36 154.1 119 65.5
C06p41720 Brassica napus HOM05D003510 ORTHO05D004144 6.4e-36 154.1 119 65.5
AT1G68280 Arabidopsis thaliana HOM05D003510 ORTHO05D004144 8.4e-36 153.7 111 70.3
AT1G35250 Arabidopsis thaliana HOM05D003510 ORTHO05D004144 2.4e-35 152.1 107 71.0
BolC6t39254H Brassica oleracea HOM05D001294 ORTHO05D001178 7.1e-35 150.6 120 65.0
CARHR286260 Cardamine hirsuta HOM05D003510 ORTHO05D004144 7.1e-35 150.6 109 73.4
Carub.0001s3293 Capsella rubella HOM05D003510 ORTHO05D004144 1.6e-34 149.4 107 70.1
AL1G49980 Arabidopsis lyrata HOM05D003510 ORTHO05D004144 1.3e-33 146.4 110 70.0
Thhalv10019154m.g Eutrema salsugineum HOM05D003510 ORTHO05D004144 3.0e-33 145.2 119 63.9
BcaB02g07984 Brassica carinata HOM05D003510 ORTHO05D004144 1.5e-32 142.9 108 69.4
BraA07t31088Z Brassica rapa HOM05D003510 ORTHO05D004144 5.6e-32 141.0 119 62.2
Aa31sc376G40 Aethionema arabicum HOM05D003510 ORTHO05D004144 9.9e-29 130.2 119 58.0
THA.LOC104808154 Tarenaya hassleriana HOM05D003510 ORTHO05D004144 1.7e-28 129.4 80 76.2
BcaB03g15105 Brassica carinata HOM05D003510 ORTHO05D004144 3.9e-25 118.2 124 54.0
Gohir.A04G098000 Gossypium hirsutum HOM05D003510 ORTHO05D004144 5.6e-24 114.4 97 59.8
Ciclev10016740m.g Citrus clementina HOM05D003510 ORTHO05D004144 7.4e-24 114.0 97 58.8
Gohir.D04G137800 Gossypium hirsutum HOM05D003510 ORTHO05D004144 7.4e-24 114.0 97 59.8
Gorai.012G122200 Gossypium raimondii HOM05D003510 ORTHO05D004144 7.4e-24 114.0 97 59.8
Lalb_Chr04g0254661 Lupinus albus HOM05D003510 ORTHO05D004144 7.4e-24 114.0 104 57.7
Duzib248G1132 Durio zibethinus HOM05D003510 ORTHO05D004144 9.6e-24 113.6 116 48.3
Atru.chr11.132 Acer truncatum HOM05D003510 ORTHO05D004144 1.6e-23 112.8 98 55.1
Glyma.01G080400 Glycine max HOM05D003510 ORTHO05D004144 1.6e-23 112.8 95 56.8
Medtr5g056390 Medicago truncatula HOM05D003510 ORTHO05D004144 2.1e-23 112.5 85 60.0
Manes.14G104000 Manihot esculenta HOM05D003510 ORTHO05D004144 2.8e-23 112.1 90 60.0
arahy.Tifrunner.gnm1.ann1.VLLQ8N Arachis hypogaea HOM05D003510 ORTHO05D004144 6.2e-23 110.9 67 71.6
Eucgr.B03007 Eucalyptus grandis HOM05D003510 ORTHO05D004144 6.2e-23 110.9 96 59.4
Lj3A1013T42 Lonicera japonica HOM05D003510 ORTHO05D004144 6.2e-23 110.9 98 55.1
Psat2g082000 Pisum sativum HOM05D003510 ORTHO05D004144 8.2e-23 110.5 71 69.0
QL01p040948 Quercus lobata HOM05D003510 ORTHO05D004144 8.2e-23 110.5 97 58.8
VMungo1215G1668 Vigna mungo HOM05D003510 ORTHO05D004144 1.1e-22 110.2 67 70.1
FAN17G2584 Fragaria x ananassa HOM05D003510 ORTHO05D004144 1.4e-22 109.8 106 53.8
MELO3C012260.2 Cucumis melo HOM05D003510 ORTHO05D004144 1.8e-22 109.4 97 57.7
Lj2g0023320 Lotus japonicus HOM05D003510 ORTHO05D004144 3.1e-22 108.6 71 69.0
Phvul.003G030100 Phaseolus vulgaris HOM05D003510 ORTHO05D004144 3.1e-22 108.6 67 70.1
Ah.02g127620 Amaranthus hybridus HOM05D003510 ORTHO05D004144 4.0e-22 108.2 70 68.6
Prupe.1G313100 Prunus persica HOM05D003510 ORTHO05D004144 4.0e-22 108.2 92 57.6
CANSAT01G1441 Cannabis sativa HOM05D003510 ORTHO05D004144 5.3e-22 107.8 96 55.2
CsaV3_5G034440 Cucumis sativus L. HOM05D003510 ORTHO05D004144 5.3e-22 107.8 96 59.4
Thecc.02G226300 Theobroma cacao HOM05D003510 ORTHO05D004144 5.3e-22 107.8 94 54.3
ATR1125G078 Amborella trichopoda HOM05D003510 ORTHO05D004144 1.2e-21 106.7 80 61.2
Cc11_g09950 Coffea canephora HOM05D003510 ORTHO05D004144 1.2e-21 106.7 73 64.4
Lsat_1_v5_gn_4_15820 Lactuca sativa HOM05D003510 ORTHO05D004144 1.2e-21 106.7 86 59.3
Sabra10G0093200 Salix brachista HOM05D003510 ORTHO05D004144 1.2e-21 106.7 94 56.4
TPR.G27953 Trifolium pratense HOM05D003510 ORTHO05D004144 1.2e-21 106.7 59 81.4
Migut.E00355 Erythranthe guttata HOM05D003510 ORTHO05D004144 1.5e-21 106.3 96 54.2
Sc11g0003500 Simmondsia chinensis HOM05D003510 ORTHO05D004144 1.5e-21 106.3 83 61.4
Lalb_Chr04g0254671 Lupinus albus HOM05D003510 ORTHO05D004144 2.0e-21 105.9 68 67.6
GSVIVG01011878001 Vitis vinifera HOM05D003510 ORTHO05D004144 2.0e-21 105.9 91 56.0
EL10Ac6g14376 Beta vulgaris HOM05D003510 ORTHO05D004144 2.6e-21 105.5 105 55.2
CiPaw.05G239200 Carya illinoinensis HOM05D003510 ORTHO05D004144 2.6e-21 105.5 116 47.4
PGR102G3338 Punica granatum HOM05D003510 ORTHO05D004144 2.6e-21 105.5 72 63.9
Ca_10364_v3 Cicer arietinum L. HOM05D003510 ORTHO05D004144 3.4e-21 105.1 84 63.1
Rhsim09G0106600 Rhododendron simsii HOM05D003510 ORTHO05D004144 3.4e-21 105.1 110 47.3
RcHm_v2.0_Chr4g0434941 Rosa chinensis HOM05D003510 ORTHO05D004144 3.4e-21 105.1 97 54.6
vmacro10567 Vaccinium macrocarpon HOM05D003510 ORTHO05D004144 3.4e-21 105.1 95 50.5
FvH4_4g27130 Fragaria vesca HOM05D003510 ORTHO05D004144 5.8e-21 104.4 83 60.2
FAN12G2466 Fragaria x ananassa HOM05D003510 ORTHO05D004144 5.8e-21 104.4 83 60.2
Hma1.2p1_0061F.1_g033710 Hydrangea macrophylla HOM05D003510 ORTHO05D004144 5.8e-21 104.4 95 52.6
Sed0022764 Sechium edule HOM05D003510 ORTHO05D004144 5.8e-21 104.4 67 70.1
Solyc04g007260.4 Solanum lycopersicum HOM05D003510 ORTHO05D004144 7.6e-21 104.0 67 67.2
Sopen04g002320 Solanum pennellii HOM05D003510 ORTHO05D004144 7.6e-21 104.0 67 67.2
TWI75G1742 Tripterygium wilfordii HOM05D003510 ORTHO05D004144 7.6e-21 104.0 70 64.3
unitig_27.g25253 Utricularia gibba HOM05D003510 ORTHO05D004144 7.6e-21 104.0 66 69.7
ClCG05G022600 Citrullus lanatus HOM05D003510 ORTHO05D004144 1.0e-20 103.6 107 53.3
MD16G1041000 Malus domestica HOM05D003510 ORTHO05D004144 1.0e-20 103.6 86 58.1
Oeu059502.1 Olea europaea HOM05D003510 ORTHO05D004144 1.0e-20 103.6 102 52.0
PGSC0003DMG400005981 Solanum tuberosum HOM05D003510 ORTHO05D004144 1.7e-20 102.8 67 67.2
AagrBONN_evm.TU.Sc2ySwM_344.2496 Anthoceros agrestis HOM05D003510 ORTHO05D004144 2.2e-20 102.4 89 53.9
FAN22G0292 Fragaria x ananassa HOM05D003510 ORTHO05D004144 2.2e-20 102.4 101 53.5
Cpa.g.sc65.42 Carica papaya HOM05D003510 ORTHO05D004144 2.9e-20 102.1 57 78.9
Peaxi162Scf00564g00029 Petunia axillaris HOM05D003510 ORTHO05D004144 2.9e-20 102.1 80 58.8
TAR371G0378 Trochodendron aralioides HOM05D003510 ORTHO05D004144 2.9e-20 102.1 67 65.7
Actinidia02892 Actinidia chinensis HOM05D003510 ORTHO05D004144 6.5e-20 100.9 64 68.8
Aqoxy3G03956 Aquilegia oxysepala HOM05D003510 ORTHO05D004144 8.4e-20 100.5 103 48.5
CSS0018626 Camellia sinensis var. sinensis HOM05D003510 ORTHO05D004144 1.1e-19 100.1 67 62.7
GSVIVG01011876001 Vitis vinifera HOM05D003510 ORTHO05D004144 1.1e-19 100.1 91 53.8
PSO063G2460 Papaver somniferum HOM05D003510 ORTHO05D004144 1.4e-19 99.8 95 49.5
Potri.010G123102 Populus trichocarpa HOM05D003510 ORTHO05D004144 1.9e-19 99.4 95 54.7
Hund25056 Selenicereus undatus HOM05D003510 ORTHO05D004144 1.9e-19 99.4 67 64.2
COL.COLO4_04883 Corchorus olitorius HOM05D003510 ORTHO05D004144 2.5e-19 99.0 84 56.0
CAN.G1052.1 Capsicum annuum HOM05D003510 ORTHO05D004144 3.2e-19 98.6 67 64.2
Haze_00607 Corylus avellana HOM05D003510 ORTHO05D004144 3.2e-19 98.6 73 64.4
HanXRQChr16g0529461 Helianthus annuus HOM05D003510 ORTHO05D004144 5.5e-19 97.8 86 52.3
CARHR259050 Cardamine hirsuta HOM05D003510 ORTHO05D004144 7.1e-19 97.4 83 62.7
Os04g0553300 Oryza sativa ssp. japonica HOM05D003510 ORTHO05D004144 7.1e-19 97.4 89 53.9
THA.LOC104815461 Tarenaya hassleriana HOM05D003510 ORTHO05D004144 7.1e-19 97.4 100 58.0
DCAR_023651 Daucus carota HOM05D003510 ORTHO05D004144 1.2e-18 96.7 57 73.7
PGSC0003DMG402015879 Solanum tuberosum HOM05D003510 ORTHO05D004144 1.6e-18 96.3 82 56.1
Zm00001eb074540 Zea mays HOM05D003510 ORTHO05D004144 2.7e-18 95.5 57 70.2
CANSAT35G0765 Cannabis sativa HOM05D003510 ORTHO05D004144 3.5e-18 95.1 82 51.2
RcHm_v2.0_Chr4g0434951 Rosa chinensis HOM05D003510 ORTHO05D004144 3.5e-18 95.1 98 52.0
Solyc04g007200.4 Solanum lycopersicum HOM05D003510 ORTHO05D004144 4.6e-18 94.7 64 67.2
Sopen04g002260 Solanum pennellii HOM05D003510 ORTHO05D004144 4.6e-18 94.7 64 65.6
HPP92_015110 Vanilla planifolia HOM05D003510 ORTHO05D004144 6.0e-18 94.4 112 44.6
HPP92_015116 Vanilla planifolia HOM05D003510 ORTHO05D004144 6.0e-18 94.4 112 44.6
CANSAT35G1684 Cannabis sativa HOM05D003510 ORTHO05D004144 7.9e-18 94.0 59 71.2
Cpa.g.sc65.43 Carica papaya HOM05D003510 ORTHO05D004144 7.9e-18 94.0 94 52.1
AUR62002850 Chenopodium quinoa HOM05D003510 ORTHO05D004144 7.9e-18 94.0 78 57.7
Migut.H02048 Erythranthe guttata HOM05D003510 ORTHO05D004144 7.9e-18 94.0 67 59.7
AUR62037321 Chenopodium quinoa HOM05D003510 ORTHO05D004144 2.3e-17 92.4 98 49.0
vmacro10568 Vaccinium macrocarpon HOM05D003510 ORTHO05D004144 2.3e-17 92.4 67 59.7
FAN12G3824 Fragaria x ananassa HOM05D003510 ORTHO05D004144 3.0e-17 92.0 63 63.5
THA.LOC104821911 Tarenaya hassleriana HOM05D003510 ORTHO05D004144 3.0e-17 92.0 98 51.0
FAN12G0948 Fragaria x ananassa HOM05D003510 ORTHO05D004144 3.9e-17 91.7 63 65.1
FAN12G1645 Fragaria x ananassa HOM05D003510 ORTHO05D004144 3.9e-17 91.7 63 65.1
CANSAT35G1707 Cannabis sativa HOM05D003510 ORTHO05D004144 5.1e-17 91.3 65 66.2
FvH4_4g27160 Fragaria vesca HOM05D003510 ORTHO05D004144 8.7e-17 90.5 63 63.5
PGSC0003DMG400007750 Solanum tuberosum HOM05D003510 ORTHO05D004144 1.5e-16 89.7 57 70.2
Aqoxy1G03141 Aquilegia oxysepala HOM05D003510 ORTHO05D004144 2.5e-16 89.0 81 55.6
MELO3C012259.2 Cucumis melo HOM05D003510 ORTHO05D004144 2.5e-16 89.0 68 55.9
PGSC0003DMG401015879 Solanum tuberosum HOM05D003510 ORTHO05D004144 2.5e-16 89.0 55 69.1
SMO119G0319 Selaginella moellendorffii HOM05D003510 ORTHO05D004144 3.3e-16 88.6 55 67.3
ECA234G2589 Erigeron canadensis HOM05D003510 ORTHO05D004144 4.3e-16 88.2 59 64.4
Lsat_1_v5_gn_5_163161 Lactuca sativa HOM05D003510 ORTHO05D004144 4.3e-16 88.2 80 51.2
Medtr5g056230 Medicago truncatula HOM05D003510 ORTHO05D004144 5.7e-16 87.8 84 50.0
A09p18480 Brassica napus HOM05D003510 ORTHO05D004144 1.3e-15 86.7 59 72.9
Lj7P525T18 Lonicera japonica HOM05D003510 ORTHO05D004144 1.3e-15 86.7 59 62.7
SEGI_30670 Sequoiadendron giganteum HOM05D003510 ORTHO05D004144 1.3e-15 86.7 55 69.1
Solyc04g007190.4 Solanum lycopersicum HOM05D003510 ORTHO05D004144 3.7e-15 85.1 55 65.5
Mapoly0104s0006 Marchantia polymorpha HOM05D003510 ORTHO05D004144 6.3e-15 84.3 55 65.5
Nitab4.5_0000057g0210 Nicotiana tabacum HOM05D003510 ORTHO05D004144 6.3e-15 84.3 80 52.5
SGA_v2.0_scaffold14G06881 Striga asiatica HOM05D003510 ORTHO05D004144 6.3e-15 84.3 128 35.9
Nitab4.5_0007398g0020 Nicotiana tabacum HOM05D003510 ORTHO05D004144 1.8e-14 82.8 67 56.7
AUR62034134 Chenopodium quinoa HOM05D003510 ORTHO05D004144 2.4e-14 82.4 77 53.2
AUR62044553 Chenopodium quinoa HOM05D003510 ORTHO05D004144 2.4e-14 82.4 77 53.2
AUR62044554 Chenopodium quinoa HOM05D003510 ORTHO05D004144 2.4e-14 82.4 77 53.2
AagrBONN_evm.TU.Sc2ySwM_344.2495 Anthoceros agrestis HOM05D003510 ORTHO05D004144 3.1e-14 82.0 123 38.2
RcHm_v2.0_Chr6g0286191 Rosa chinensis HOM05D003510 ORTHO05D004144 3.1e-14 82.0 61 55.7
RcHm_v2.0_Chr6g0286261 Rosa chinensis HOM05D003510 ORTHO05D004144 3.1e-14 82.0 61 55.7
HanXRQChr03g0078631 Helianthus annuus HOM05D003510 ORTHO05D004144 6.9e-14 80.9 59 57.6
HanXRQChr10g0288901 Helianthus annuus HOM05D003510 ORTHO05D004144 6.9e-14 80.9 59 57.6
HanXRQChr10g0296841 Helianthus annuus HOM05D003510 ORTHO05D004144 6.9e-14 80.9 59 57.6
Psat0s3549g0120 Pisum sativum HOM05D003510 ORTHO05D004144 6.9e-14 80.9 92 46.7
AUR62034133 Chenopodium quinoa HOM05D003510 ORTHO05D004144 1.2e-13 80.1 59 62.7
RcHm_v2.0_Chr6g0286301 Rosa chinensis HOM05D003510 ORTHO05D004144 1.2e-13 80.1 60 60.0
RcHm_v2.0_Chr6g0286321 Rosa chinensis HOM05D003510 ORTHO05D004144 1.2e-13 80.1 60 60.0
ECA234G3856 Erigeron canadensis HOM05D003510 ORTHO05D000001 1.5e-13 79.7 80 47.5
AUR62023875 Chenopodium quinoa HOM05D003510 ORTHO05D004144 1.3e-12 76.6 59 61.0
RcHm_v2.0_Chr6g0286291 Rosa chinensis HOM05D003510 ORTHO05D004144 1.7e-12 76.3 60 56.7
DCAR_007249 Daucus carota HOM05D003510 ORTHO05D004144 2.2e-12 75.9 63 55.6
RcHm_v2.0_Chr6g0286141 Rosa chinensis HOM05D003510 ORTHO05D004144 2.9e-12 75.5 60 53.3
Ah.01g017060 Amaranthus hybridus HOM05D003510 ORTHO05D004144 8.5e-12 73.9 91 46.2
Actinidia16662 Actinidia chinensis HOM05D003510 ORTHO05D004144 1.1e-11 73.6 60 60.0
SMO141G0281 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 1.1e-11 73.6 55 56.4
arahy.Tifrunner.gnm1.ann1.LKJ3D4 Arachis hypogaea HOM05D003510 ORTHO05D004144 3.2e-11 72.0 67 52.2
Dinv21067 Davidia involucrata HOM05D003510 ORTHO05D004144 5.5e-11 71.2 56 58.9
Gohir.D04G137825 Gossypium hirsutum HOM05D003510 ORTHO05D004144 5.5e-11 71.2 53 62.3
Haze_00608 Corylus avellana HOM05D003510 ORTHO05D004144 9.4e-11 70.5 47 68.1
Medtr5g056300 Medicago truncatula HOM05D003510 ORTHO05D004144 1.2e-10 70.1 49 67.3
MSTRG.13540 Avicennia marina HOM05D003510 ORTHO05D004144 1.6e-10 69.7 41 73.2
Migut.M00675 Erythranthe guttata HOM05D003510 ORTHO05D004144 2.1e-10 69.3 106 35.8
Zm00001eb074550 Zea mays HOM05D003510 ORTHO05D004144 1.0e-09 67.0 60 51.7
Cre04.g213761 Chlamydomonas reinhardtii HOM05D003510 ORTHO05D004144 1.8e-09 66.2 52 55.8
SalBow8G4707 Salvia bowleyana HOM05D003510 ORTHO05D004144 3.0e-09 65.5 54 51.9
Os02g0659700 Oryza sativa ssp. japonica HOM05D003510 ORTHO05D004144 5.1e-09 64.7 57 50.9
SGA_v2.0_scaffold73G24371 Striga asiatica HOM05D003510 ORTHO05D004144 5.1e-09 64.7 46 58.7
Gorai.012G122400 Gossypium raimondii HOM05D003510 ORTHO05D004144 8.8e-09 63.9 58 58.6
SGA_v2.0_scaffold211G42096 Striga asiatica HOM05D003510 ORTHO05D004144 1.9e-08 62.8 46 56.5
DCAR_026739 Daucus carota HOM05D003510 ORTHO05D004144 2.5e-08 62.4 52 55.8
Migut.M00674 Erythranthe guttata HOM05D003510 ORTHO05D004144 4.3e-08 61.6 106 32.1
Zm00001eb249640 Zea mays HOM05D003510 ORTHO05D004144 2.2e-07 59.3 57 47.4
Ah.01g005250 Amaranthus hybridus HOM05D000873 ORTHO05D001654 3.7e-07 58.5 48 52.1
TPR.G38336 Trifolium pratense HOM05D003510 ORTHO05D004144 3.7e-07 58.5 68 41.2
AUR62022283 Chenopodium quinoa HOM05D003510 ORTHO05D004144 6.3e-07 57.8 31 80.6
Os02g0660800 Oryza sativa ssp. japonica HOM05D003510 ORTHO05D004144 5.3e-06 54.7 57 38.6


User provided reference genes

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