Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G49940 Arabidopsis lyrata HOM05D001026 ORTHO05D005232 0.0e+00 1990.3 1010 100.0
AT1G35220 Arabidopsis thaliana HOM05D001026 ORTHO05D005232 0.0e+00 1914.4 1015 95.1
Carub.0001s3287 Capsella rubella HOM05D001026 ORTHO05D005232 0.0e+00 1858.6 1010 92.0
CARHR286320 Cardamine hirsuta HOM05D001026 ORTHO05D005232 0.0e+00 1855.1 1010 91.2
Thhalv10006673m.g Eutrema salsugineum HOM05D001026 ORTHO05D005232 0.0e+00 1854.3 1015 91.9
Sp1g25380 Schrenkiella parvula HOM05D001026 ORTHO05D005232 0.0e+00 1839.3 1015 91.0
BraA07t28862Z Brassica rapa HOM05D001026 ORTHO05D005232 0.0e+00 1829.3 1010 90.7
BolC7t42122H Brassica oleracea HOM05D001026 ORTHO05D005232 0.0e+00 1825.8 1010 90.4
A07p10680 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1824.3 1010 90.5
C07p16280 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1824.3 1010 90.3
BcaB03g13886 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1817.0 1015 90.0
BcaC06g35430 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1816.6 1010 90.0
Aa31LG6G8880 Aethionema arabicum HOM05D001026 ORTHO05D005232 0.0e+00 1690.6 1014 83.9
THA.LOC104816596 Tarenaya hassleriana HOM05D001026 ORTHO05D005232 0.0e+00 1682.5 1026 82.9
TAR381G1087 Trochodendron aralioides HOM05D001026 ORTHO05D005232 0.0e+00 1491.9 1019 73.0
CiPaw.15G045700 Carya illinoinensis HOM05D001026 ORTHO05D005232 0.0e+00 1489.6 1023 73.7
QL02p002343 Quercus lobata HOM05D001026 ORTHO05D005232 0.0e+00 1480.7 1021 73.2
Potri.002G100800 Populus trichocarpa HOM05D001026 ORTHO05D005232 0.0e+00 1474.5 1023 73.1
Ciclev10000130m.g Citrus clementina HOM05D001026 ORTHO05D005232 0.0e+00 1473.4 1029 72.8
Atru.chr13.1116 Acer truncatum HOM05D001026 ORTHO05D005232 0.0e+00 1472.6 1025 73.0
Prupe.1G523400 Prunus persica HOM05D001026 ORTHO05D005232 0.0e+00 1471.8 1016 73.6
Sabra02G0079000 Salix brachista HOM05D001026 ORTHO05D005232 0.0e+00 1464.5 1037 71.6
TWI56G0493 Tripterygium wilfordii HOM05D001026 ORTHO05D005232 0.0e+00 1463.0 1024 72.2
Eucgr.B00041 Eucalyptus grandis HOM05D001026 ORTHO05D005232 0.0e+00 1461.8 1018 71.8
Thecc.08G101700 Theobroma cacao HOM05D001026 ORTHO05D005232 0.0e+00 1452.2 1024 72.1
Hma1.2p1_0593F.1_g185750 Hydrangea macrophylla HOM05D001026 ORTHO05D005232 0.0e+00 1450.6 1013 72.3
MD08G1188800 Malus domestica HOM05D001026 ORTHO05D005232 0.0e+00 1450.6 1020 72.6
Duzib041G0801 Durio zibethinus HOM05D001026 ORTHO05D005232 0.0e+00 1448.0 1020 71.7
FvH4_5g36450 Fragaria vesca HOM05D001026 ORTHO05D005232 0.0e+00 1439.5 1017 71.5
RcHm_v2.0_Chr7g0238491 Rosa chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1438.3 1017 71.0
Gohir.A03G045800 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1437.6 1027 70.8
COL.COLO4_12005 Corchorus olitorius HOM05D001026 ORTHO05D005232 0.0e+00 1432.5 1029 70.8
vmacro21290 Vaccinium macrocarpon HOM05D001026 ORTHO05D005232 0.0e+00 1430.2 1020 71.7
Nn7g37838 Nelumbo nucifera HOM05D001026 ORTHO05D005232 0.0e+00 1429.8 1019 70.4
Gohir.D03G121400 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1426.8 1027 70.4
Ca_16276_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 0.0e+00 1425.6 1018 71.4
Gorai.003G128400 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1425.6 1027 70.3
FAN18G1967 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1424.1 1042 69.7
Manes.02G148900 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1422.5 1026 69.9
Lj6g0009212 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1422.1 1026 70.2
FAN08G3634 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1421.8 1042 69.6
Manes.18G063378 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1421.4 1013 71.5
Medtr3g080120 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1421.4 1025 70.9
TPR.G34506 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1419.1 1022 71.6
Rhsim06G0077700 Rhododendron simsii HOM05D001026 ORTHO05D005232 0.0e+00 1417.1 1026 70.8
FAN04G2218 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1416.0 1053 68.9
FAN13G1430 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1409.4 1035 69.8
Psat5g110840 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1406.7 1017 70.6
Lalb_Chr18g0048141 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1403.7 1022 69.9
Aqoxy6G00082 Aquilegia oxysepala HOM05D001026 ORTHO05D005232 0.0e+00 1399.4 1018 70.1
Cfa017894 Carpinus fangiana HOM05D001026 ORTHO05D005232 0.0e+00 1396.3 975 72.8
GSVIVG01009085001 Vitis vinifera HOM05D001026 ORTHO05D005232 0.0e+00 1395.9 1020 69.6
CANSAT64G2709 Cannabis sativa HOM05D001026 ORTHO05D005232 0.0e+00 1394.0 1023 70.7
Cc10_g06660 Coffea canephora HOM05D001026 ORTHO05D005232 0.0e+00 1390.2 1016 69.6
PSO700G0312 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1386.7 1043 67.7
PSO447G0261 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1384.4 1050 67.4
CsaV3_3G047720 Cucumis sativus L. HOM05D001026 ORTHO05D005232 0.0e+00 1379.8 1020 68.6
Oeu029742.2 Olea europaea HOM05D001026 ORTHO05D005232 0.0e+00 1378.2 1011 68.5
Phvul.L003337 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1376.7 1025 69.1
MSTRG.24986 Avicennia marina HOM05D001026 ORTHO05D005232 0.0e+00 1375.5 1020 67.9
Migut.C00225 Erythranthe guttata HOM05D001026 ORTHO05D005232 0.0e+00 1371.7 1011 68.2
MBI06_g22313_MAGBIO Magnolia biondii HOM05D001026 ORTHO05D005232 0.0e+00 1370.5 1059 66.0
SalBow7G3028 Salvia bowleyana HOM05D001026 ORTHO05D005232 0.0e+00 1368.2 1014 68.1
Solyc04g074720.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1367.8 1012 68.6
Sed0011558 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1366.3 1030 67.7
CAN.G1173.1 Capsicum annuum HOM05D001026 ORTHO05D005232 0.0e+00 1364.4 1015 68.2
Sc01g0000810 Simmondsia chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1362.1 1035 68.0
Sopen04g029690 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1359.7 1012 68.2
Peaxi162Scf00030g02517 Petunia axillaris HOM05D001026 ORTHO05D005232 0.0e+00 1352.4 1047 66.6
SGA_v2.0_scaffold74G24568 Striga asiatica HOM05D001026 ORTHO05D005232 0.0e+00 1352.0 1020 67.0
VMungo0540G1065 Vigna mungo HOM05D001026 ORTHO05D005232 0.0e+00 1347.4 1088 64.9
Glyma.13G027300 Glycine max HOM05D001026 ORTHO05D005232 0.0e+00 1345.5 976 70.3
Lalb_Chr17g0347341 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1343.6 1024 67.3
Sed0018981 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1338.9 1021 67.1
Nitab4.5_0005108g0010 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1336.6 991 68.4
Solyc12g057130.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1324.7 1018 66.3
DCAR_009580 Daucus carota HOM05D001026 ORTHO05D005232 0.0e+00 1323.1 1010 67.5
ClCG11G014330 Citrullus lanatus HOM05D001026 ORTHO05D005232 0.0e+00 1318.9 984 68.1
Ah.05g169670 Amaranthus hybridus HOM05D001026 ORTHO05D005232 0.0e+00 1317.4 1040 64.8
Dinv07074 Davidia involucrata HOM05D001026 ORTHO05D005232 0.0e+00 1316.2 941 71.6
Lj4C96G17 Lonicera japonica HOM05D001026 ORTHO05D005232 0.0e+00 1303.1 1017 67.1
Medtr5g085880 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1299.6 1029 64.2
EL10Ac1g01144 Beta vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1287.3 1037 63.7
Psat2g022120 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1286.9 1023 63.7
LjContig00564g0017936 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1285.8 1034 63.7
arahy.Tifrunner.gnm1.ann1.SJ0MJA Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1282.7 1009 65.8
Lsat_1_v5_gn_9_73921 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1279.2 1010 64.8
arahy.Tifrunner.gnm1.ann1.H5V4Y1 Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1277.3 1009 65.9
Nitab4.5_0000786g0020 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1274.6 991 66.2
MELO3C003550.2 Cucumis melo HOM05D001026 ORTHO05D005232 0.0e+00 1271.1 1119 60.4
Sopen12g029790 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1271.1 975 67.1
HanXRQChr09g0248911 Helianthus annuus HOM05D001026 ORTHO05D005232 0.0e+00 1263.4 1011 65.1
ECA247G3686 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1263.1 1014 65.0
ATR0684G075 Amborella trichopoda HOM05D001026 ORTHO05D005232 0.0e+00 1261.1 987 66.3
Gorai.010G037700 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1255.4 1022 64.7
HPP92_016948 Vanilla planifolia HOM05D001026 ORTHO05D005232 0.0e+00 1247.6 1022 62.7
TPR.G14449 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1245.7 1033 61.8
Lsat_1_v5_gn_1_3061 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1243.8 1016 64.0
Ca_06108_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 0.0e+00 1230.7 1053 60.9
ECA232G4443 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1230.3 951 66.2
AUR62018974 Chenopodium quinoa HOM05D001026 ORTHO05D005232 0.0e+00 1219.1 1049 61.2
PGSC0003DMG400017755 Solanum tuberosum HOM05D001026 ORTHO05D005232 0.0e+00 1218.0 1018 62.8
arahy.Tifrunner.gnm1.ann1.1274C3 Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1207.2 1155 55.6
HanXRQChr12g0379801 Helianthus annuus HOM05D001026 ORTHO05D005232 0.0e+00 1198.7 1006 61.6
VMungo0647G2280 Vigna mungo HOM05D001026 ORTHO05D005232 0.0e+00 1198.7 1046 60.6
arahy.Tifrunner.gnm1.ann1.Z84UIM Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1192.2 1188 54.1
Gohir.D06G034200 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1191.4 927 67.4
Hund16887 Selenicereus undatus HOM05D001026 ORTHO05D005232 0.0e+00 1189.5 1046 59.7
Os01g0303200 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 0.0e+00 1177.5 1004 60.4
Zm00001eb288650 Zea mays HOM05D001026 ORTHO05D005232 0.0e+00 1176.8 1012 59.4
Glyma.02G270100 Glycine max HOM05D001026 ORTHO05D005232 0.0e+00 1164.8 1018 60.8
AUR62027815 Chenopodium quinoa HOM05D001026 ORTHO05D005232 0.0e+00 1156.7 1027 60.0
CSS0035277 Camellia sinensis var. sinensis HOM05D001026 ORTHO05D005232 0.0e+00 1150.6 877 67.3
Os05g0355133 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 0.0e+00 1139.8 1012 57.3
Phvul.008G211900 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1124.0 1019 58.8
unitig_46.g17923 Utricularia gibba HOM05D001026 ORTHO05D005232 0.0e+00 1112.4 898 64.8
Actinidia30796 Actinidia chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1097.0 994 59.9
Zm00001eb130190 Zea mays HOM05D001026 ORTHO05D005232 0.0e+00 1083.6 940 59.4
Gohir.A06G033300 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1076.2 870 65.3
MD15G1376700 Malus domestica HOM05D001026 ORTHO05D005232 2.4e-302 1042.3 821 67.4
CDE10G1069 Ceratophyllum demersum HOM05D001026 ORTHO05D005232 6.4e-284 981.1 950 57.1
Zm00001eb286080 Zea mays HOM05D001026 ORTHO05D005232 1.6e-274 949.9 870 57.6
Hund26991 Selenicereus undatus HOM05D001026 ORTHO05D005232 1.4e-262 910.2 781 62.4
AagrBONN_evm.TU.Sc2ySwM_228.1520 Anthoceros agrestis HOM05D001026 ORTHO05D005232 4.1e-262 908.7 1047 48.2
Mapoly0104s0038 Marchantia polymorpha HOM05D001026 ORTHO05D005232 4.5e-261 905.2 1038 48.7
SMO356G0157 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 4.2e-251 872.1 983 48.8
Haze_18258 Corylus avellana HOM05D001026 ORTHO05D005232 1.5e-240 837.0 636 69.7
Dinv05859 Davidia involucrata HOM05D001026 ORTHO05D005232 7.7e-237 824.7 637 67.7
Pp3c1_27170 Physcomitrium patens HOM05D001026 ORTHO05D005232 6.1e-234 815.1 1019 45.1
Pp3c2_15510 Physcomitrium patens HOM05D001026 ORTHO05D005232 1.1e-230 804.3 1021 44.9
Glyma.20G056500 Glycine max HOM05D001026 ORTHO05D005232 1.4e-225 787.3 652 65.3
Peaxi162Scf00571g00528 Petunia axillaris HOM05D001026 ORTHO05D005232 1.2e-216 757.7 628 63.5
CBR_g5699 Chara braunii HOM05D001026 ORTHO05D005232 8.6e-212 741.5 1223 40.1
SMO134G0184 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 2.3e-209 733.4 899 43.3
Glyma.20G056600 Glycine max HOM05D001026 ORTHO05D005232 1.8e-177 627.5 387 76.7
Dinv05858 Davidia involucrata HOM05D001026 ORTHO05D005232 6.2e-170 602.4 360 78.9
Manes.18G025208 Manihot esculenta HOM05D001026 ORTHO05D005232 1.6e-157 561.2 389 72.0
Psat0s5307g0040 Pisum sativum HOM05D001026 ORTHO05D005232 9.3e-150 535.4 405 68.6
Psat4g114320 Pisum sativum HOM05D001026 ORTHO05D005232 5.1e-148 529.6 405 68.1
SEGI_18178 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 6.5e-143 512.7 573 51.3
SHI20583 Sapria himalayana HOM05D001026 ORTHO05D005232 1.4e-137 495.0 536 51.1
Haze_18259 Corylus avellana HOM05D001026 ORTHO05D005232 1.8e-100 371.7 237 76.4
arahy.Tifrunner.gnm1.ann1.WH8Y2A Arachis hypogaea HOM05D001026 ORTHO05D005232 6.8e-100 369.8 252 73.4
MD15G1376600 Malus domestica HOM05D001026 ORTHO05D005232 7.5e-99 366.3 205 80.0
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 8.3e-98 362.8 276 67.0
SHI20581 Sapria himalayana HOM05D001026 ORTHO05D005232 1.6e-85 322.0 238 67.6
Cre10.g457150 Chlamydomonas reinhardtii HOM05D001026 ORTHO05D005232 1.0e-79 302.8 844 27.8
Psat1g107360 Pisum sativum HOM05D001026 ORTHO05D005232 1.1e-78 299.3 220 70.0
Haze_18261 Corylus avellana HOM05D001026 ORTHO05D005232 5.8e-75 287.0 162 80.9
Hund26990 Selenicereus undatus HOM05D001026 ORTHO05D005232 5.6e-70 270.4 150 82.0
Psat7g123360 Pisum sativum HOM05D002169 ORTHO05D006577 1.5e-54 219.2 226 52.7
Psat0s2339g0080 Pisum sativum HOM05D001026 ORTHO05D005232 3.3e-54 218.0 232 54.3
Psat0s3076g0120 Pisum sativum HOM05D003435 ORTHO05D004032 2.6e-51 208.4 213 56.3
QL02p059881 Quercus lobata HOM05D001026 ORTHO05D005232 9.6e-46 189.9 147 69.4
SHI20572 Sapria himalayana HOM05D001026 ORTHO05D005232 1.3e-45 189.5 114 71.9
PRCOL_00002948 Prasinoderma coloniale HOM05D001026 ORTHO05D005232 1.6e-45 189.1 479 31.3
SEGI_27036 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 7.9e-40 170.2 90 81.1
Psat3g007920 Pisum sativum HOM05D001026 ORTHO05D005232 2.5e-38 165.2 149 54.4
Psat0s3521g0080 Pisum sativum HOM05D000555 ORTHO05D001906 1.8e-36 159.1 117 71.8
Psat4g129920 Pisum sativum HOM05D003435 ORTHO05D004032 3.1e-36 158.3 199 48.7
SEGI_36321 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 3.3e-30 138.3 79 77.2
Psat4g066520 Pisum sativum HOM05D001026 ORTHO05D007418 1.3e-29 136.3 129 55.8
HPP92_016951 Vanilla planifolia HOM05D001026 ORTHO05D005232 1.3e-26 126.3 77 70.1
C05p28240 Brassica napus HOM05D001026 ORTHO05D023993 1.7e-26 125.9 99 65.7
BolC5t31548H Brassica oleracea HOM05D001026 ORTHO05D023993 1.7e-26 125.9 99 65.7
BcaC05g26968 Brassica carinata HOM05D001026 ORTHO05D023993 8.5e-26 123.6 81 76.5
Psat3g111480 Pisum sativum HOM05D001026 ORTHO05D008599 9.4e-25 120.2 96 62.5
CDE10G0833 Ceratophyllum demersum HOM05D001026 ORTHO05D023993 3.3e-22 111.7 80 65.0
Psat0s1135g0080 Pisum sativum HOM05D001026 ORTHO05D005232 3.7e-21 108.2 96 54.2
BcaB07g32536 Brassica carinata HOM05D001026 ORTHO05D023993 3.6e-16 91.7 81 63.0
Psat0s3199g0080 Pisum sativum HOM05D000071 ORTHO05D022797 3.0e-15 88.6 58 77.6
Psat4g159480 Pisum sativum HOM05D002169 ORTHO05D006577 1.7e-13 82.8 71 54.9
BcaB07g32539 Brassica carinata HOM05D001026 ORTHO05D092453 2.0e-11 75.9 67 64.2
SHI20575 Sapria himalayana HOM05D001026 ORTHO05D005232 3.5e-11 75.1 46 76.1
AagrBONN_evm.TU.Sc2ySwM_368.2118 Anthoceros agrestis HOM05D001026 ORTHO05D005232 6.5e-10 70.9 48 68.8
Psat3g007840 Pisum sativum HOM05D001026 ORTHO05D005232 3.6e-08 65.1 65 49.2


User provided reference genes

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