Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G49640 Arabidopsis lyrata HOM05D006592 ORTHO05D008122 1.7e-304 1048.5 523 100.0
AT1G31410 Arabidopsis thaliana HOM05D006592 ORTHO05D008122 5.9e-281 970.3 525 93.0
Carub.0001s2983 Capsella rubella HOM05D006592 ORTHO05D008122 3.7e-267 924.5 515 90.3
Thhalv10007328m.g Eutrema salsugineum HOM05D006592 ORTHO05D008122 4.8e-259 897.5 532 86.5
Sp1g27210 Schrenkiella parvula HOM05D006592 ORTHO05D008122 1.2e-249 866.3 534 83.0
BcaB03g13796 Brassica carinata HOM05D006592 ORTHO05D008122 2.0e-236 822.4 526 78.7
BraA07t28736Z Brassica rapa HOM05D006592 ORTHO05D008122 7.0e-234 813.9 528 79.5
A07p09410 Brassica napus HOM05D006592 ORTHO05D008122 9.2e-234 813.5 526 78.9
C07p14480 Brassica napus HOM05D006592 ORTHO05D008122 9.5e-231 803.5 528 78.2
BolC7t41947H Brassica oleracea HOM05D006592 ORTHO05D008122 1.2e-230 803.1 528 78.0
Aa31LG2G14540 Aethionema arabicum HOM05D006592 ORTHO05D008122 2.6e-228 795.4 548 76.8
THA.LOC104814375 Tarenaya hassleriana HOM05D006592 ORTHO05D008122 1.1e-210 736.9 517 72.3
QL02p100032 Quercus lobata HOM05D006592 ORTHO05D008122 2.2e-163 579.7 470 60.6
Sabra03G0072100 Salix brachista HOM05D006592 ORTHO05D008122 2.9e-163 579.3 476 59.7
MD07G1026800 Malus domestica HOM05D006592 ORTHO05D008122 1.1e-162 577.4 486 61.5
Potri.003G105100 Populus trichocarpa HOM05D006592 ORTHO05D008122 7.2e-162 574.7 476 59.5
Prupe.2G060600 Prunus persica HOM05D006592 ORTHO05D008122 1.8e-160 570.1 486 59.3
Dinv37459 Davidia involucrata HOM05D006592 ORTHO05D008122 2.6e-159 566.2 480 59.2
Atru.chr6.2117 Acer truncatum HOM05D006592 ORTHO05D008122 5.7e-159 565.1 460 61.5
CiPaw.11G105000 Carya illinoinensis HOM05D006592 ORTHO05D008122 4.1e-157 558.9 422 64.0
Hma1.2p1_1256F.1_g270670 Hydrangea macrophylla HOM05D006592 ORTHO05D008122 2.6e-156 556.2 479 58.5
GSVIVG01036935001 Vitis vinifera HOM05D006592 ORTHO05D008122 2.6e-156 556.2 469 59.3
TPR.G16815 Trifolium pratense HOM05D006592 ORTHO05D008122 3.5e-156 555.8 523 55.1
Manes.17G005500 Manihot esculenta HOM05D006592 ORTHO05D008122 4.5e-156 555.4 472 59.5
FAN25G1190 Fragaria x ananassa HOM05D006592 ORTHO05D008122 5.9e-156 555.1 479 58.5
Actinidia29329 Actinidia chinensis HOM05D006592 ORTHO05D008122 1.0e-155 554.3 474 58.2
Haze_08005 Corylus avellana HOM05D006592 ORTHO05D008122 1.5e-154 550.4 474 58.0
FvH4_3g41920 Fragaria vesca HOM05D006592 ORTHO05D008122 4.2e-154 548.9 477 57.9
Eucgr.E01202 Eucalyptus grandis HOM05D006592 ORTHO05D008122 7.2e-154 548.1 439 62.0
PSO782G0843 Papaver somniferum HOM05D006592 ORTHO05D008122 9.4e-154 547.7 481 57.2
RcHm_v2.0_Chr1g0331171 Rosa chinensis HOM05D006592 ORTHO05D008122 9.4e-154 547.7 478 57.7
HanXRQChr13g0411871 Helianthus annuus HOM05D006592 ORTHO05D008122 1.6e-153 547.0 473 55.0
FAN11G2031 Fragaria x ananassa HOM05D006592 ORTHO05D008122 2.7e-153 546.2 477 57.9
CARHR030900 Cardamine hirsuta HOM05D006592 ORTHO05D008122 3.6e-153 545.8 300 89.3
PSO063G4459 Papaver somniferum HOM05D006592 ORTHO05D008122 3.6e-153 545.8 481 56.8
Lalb_Chr05g0229391 Lupinus albus HOM05D006592 ORTHO05D008122 8.0e-153 544.7 472 59.7
FAN21G3043 Fragaria x ananassa HOM05D006592 ORTHO05D008122 1.4e-152 543.9 479 58.0
Ca_22475_v3 Cicer arietinum L. HOM05D006592 ORTHO05D008122 3.0e-152 542.7 477 57.2
ClCG11G016240 Citrullus lanatus HOM05D006592 ORTHO05D008122 3.0e-152 542.7 480 57.9
Duzib084G0624 Durio zibethinus HOM05D006592 ORTHO05D008122 3.0e-152 542.7 480 59.0
TWI60G0674 Tripterygium wilfordii HOM05D006592 ORTHO05D008122 5.2e-152 542.0 506 54.2
Nitab4.5_0004477g0030 Nicotiana tabacum HOM05D006592 ORTHO05D008122 1.5e-151 540.4 449 59.0
TAR622G1375 Trochodendron aralioides HOM05D006592 ORTHO05D008122 2.0e-151 540.0 511 54.0
Glyma.16G075200 Glycine max HOM05D006592 ORTHO05D008122 4.4e-151 538.9 477 57.4
Thecc.03G323800 Theobroma cacao HOM05D006592 ORTHO05D008122 1.3e-150 537.3 430 61.9
PGR042G2051 Punica granatum HOM05D006592 ORTHO05D008122 1.7e-150 537.0 406 63.5
Phvul.003G276900 Phaseolus vulgaris HOM05D006592 ORTHO05D008122 2.2e-150 536.6 478 57.7
MELO3C010544.2 Cucumis melo HOM05D006592 ORTHO05D008122 6.3e-150 535.0 477 56.6
Lsat_1_v5_gn_5_55220 Lactuca sativa HOM05D006592 ORTHO05D008122 6.3e-150 535.0 478 55.9
Medtr8g071820 Medicago truncatula HOM05D006592 ORTHO05D008122 6.3e-150 535.0 467 58.0
Aqoxy7G04139 Aquilegia oxysepala HOM05D006592 ORTHO05D008122 1.8e-149 533.5 434 59.0
arahy.Tifrunner.gnm1.ann1.6CV8VS Arachis hypogaea HOM05D006592 ORTHO05D008122 3.1e-149 532.7 471 57.5
SalBow8G1786 Salvia bowleyana HOM05D006592 ORTHO05D008122 7.0e-149 531.6 498 53.4
CAN.G561.14 Capsicum annuum HOM05D006592 ORTHO05D008122 4.5e-148 528.9 478 56.3
arahy.Tifrunner.gnm1.ann1.35U8WI Arachis hypogaea HOM05D006592 ORTHO05D008122 5.9e-148 528.5 467 57.2
CsaV3_4G037940 Cucumis sativus L. HOM05D006592 ORTHO05D008122 5.9e-148 528.5 476 56.3
DCAR_028262 Daucus carota HOM05D006592 ORTHO05D008122 5.9e-148 528.5 470 56.4
Gorai.004G175600 Gossypium raimondii HOM05D006592 ORTHO05D008122 2.9e-147 526.2 402 63.4
SalBow8G4832 Salvia bowleyana HOM05D006592 ORTHO05D008122 2.9e-147 526.2 498 52.8
PGSC0003DMG400024141 Solanum tuberosum HOM05D006592 ORTHO05D008122 2.9e-147 526.2 470 56.4
ECA240G2178 Erigeron canadensis HOM05D006592 ORTHO05D008122 3.8e-147 525.8 429 59.7
Solyc08g005860.3 Solanum lycopersicum HOM05D006592 ORTHO05D008122 3.8e-147 525.8 454 57.7
Gohir.D08G168300 Gossypium hirsutum HOM05D006592 ORTHO05D008122 5.0e-147 525.4 416 61.5
vmacro05080 Vaccinium macrocarpon HOM05D006592 ORTHO05D008122 8.5e-147 524.6 478 55.4
Nitab4.5_0000063g0390 Nicotiana tabacum HOM05D006592 ORTHO05D008122 1.1e-146 524.2 485 54.4
Sopen08g001820 Solanum pennellii HOM05D006592 ORTHO05D008122 2.5e-146 523.1 454 57.5
Migut.E01392 Erythranthe guttata HOM05D006592 ORTHO05D008122 8.0e-145 518.1 494 51.6
Peaxi162Scf00045g01236 Petunia axillaris HOM05D006592 ORTHO05D008122 2.6e-143 513.1 472 54.4
AUR62007438 Chenopodium quinoa HOM05D006592 ORTHO05D008122 3.4e-143 512.7 440 56.6
CDE11G0624 Ceratophyllum demersum HOM05D006592 ORTHO05D008122 2.2e-142 510.0 461 55.5
Rhsim07G0174700 Rhododendron simsii HOM05D006592 ORTHO05D008122 4.8e-142 508.8 445 56.4
ATR0829G075 Amborella trichopoda HOM05D006592 ORTHO05D008122 6.3e-142 508.4 409 59.7
COL.COLO4_16712 Corchorus olitorius HOM05D006592 ORTHO05D008122 1.1e-141 507.7 413 61.5
Ah.02g117360 Amaranthus hybridus HOM05D006592 ORTHO05D008122 2.4e-141 506.5 501 52.1
EL10Ac5g11887 Beta vulgaris HOM05D006592 ORTHO05D008122 4.1e-141 505.8 422 58.1
Zm00001eb430350 Zea mays HOM05D006592 ORTHO05D008122 4.1e-141 505.8 416 57.7
Cc00_g08640 Coffea canephora HOM05D006592 ORTHO05D008122 1.3e-139 500.7 428 56.8
Oeu028120.2 Olea europaea HOM05D006592 ORTHO05D008122 1.3e-139 500.7 491 52.1
SGA_v2.0_scaffold144G35824 Striga asiatica HOM05D006592 ORTHO05D008122 3.8e-139 499.2 484 52.5
Hund14317 Selenicereus undatus HOM05D006592 ORTHO05D008122 4.2e-138 495.7 514 51.0
VMungo0251G2096 Vigna mungo HOM05D006592 ORTHO05D008122 3.1e-133 479.6 427 57.1
unitig_899.g15474 Utricularia gibba HOM05D006592 ORTHO05D008122 4.3e-130 469.2 454 54.0
Os04g0602200 Oryza sativa ssp. japonica HOM05D006592 ORTHO05D008122 3.5e-124 449.5 368 56.8
Pp3c1_19230 Physcomitrium patens HOM05D006592 ORTHO05D008122 4.0e-112 409.5 387 50.1
Mapoly0006s0240 Marchantia polymorpha HOM05D006592 ORTHO05D008122 1.4e-109 401.0 450 46.0
Gohir.A08G147100 Gossypium hirsutum HOM05D006592 ORTHO05D008122 5.4e-109 399.1 289 65.1
Glyma.16G106500 Glycine max HOM05D006592 ORTHO05D008122 9.2e-109 398.3 305 64.6
Hma1.2p1_1046F.1_g251540 Hydrangea macrophylla HOM05D006592 ORTHO05D008122 1.3e-107 394.4 301 65.1
Psat4g109400 Pisum sativum HOM05D006592 ORTHO05D008122 1.7e-107 394.0 292 64.4
SMO244G0026 Selaginella moellendorffii HOM05D006592 ORTHO05D008122 2.3e-107 393.7 388 50.3
AagrBONN_evm.TU.Sc2ySwM_344.4668 Anthoceros agrestis HOM05D006592 ORTHO05D008122 2.1e-105 387.1 504 41.3
Sc01g0005980 Simmondsia chinensis HOM05D006592 ORTHO05D008122 1.4e-96 357.8 279 63.1
Nn1g09214 Nelumbo nucifera HOM05D006592 ORTHO05D008122 1.3e-94 351.3 481 43.5
CBR_g19872 Chara braunii HOM05D006592 ORTHO05D008122 1.4e-85 321.2 357 46.8
CSS0028407 Camellia sinensis var. sinensis HOM05D006592 ORTHO05D008122 2.4e-85 320.5 255 62.4
CBR_g37675 Chara braunii HOM05D006592 ORTHO05D008122 3.0e-83 313.5 357 45.4
Lj8A380T21 Lonicera japonica HOM05D006592 ORTHO05D008122 6.7e-83 312.4 239 64.0
AUR62027300 Chenopodium quinoa HOM05D006592 ORTHO05D008122 1.5e-82 311.2 477 38.6
HPP92_015141 Vanilla planifolia HOM05D006592 ORTHO05D008122 3.3e-82 310.1 220 65.0
Lj4g0008520 Lotus japonicus HOM05D006592 ORTHO05D008122 6.9e-80 302.4 242 62.8
MBI04_g30774_MAGBIO Magnolia biondii HOM05D006592 ORTHO05D008122 8.4e-78 295.4 437 39.8
CSS0043715 Camellia sinensis var. sinensis HOM05D006592 ORTHO05D008122 5.1e-75 286.2 240 60.4
CANSAT11G2102 Cannabis sativa HOM05D006592 ORTHO05D008122 4.6e-60 236.5 227 52.4
Sed0001244 Sechium edule HOM05D006592 ORTHO05D008122 3.3e-58 230.3 486 34.0
Cre06.g292100 Chlamydomonas reinhardtii HOM05D006592 ORTHO05D008122 5.3e-56 223.0 321 36.8
CSS0050204 Camellia sinensis var. sinensis HOM05D006592 ORTHO05D008122 1.5e-55 221.5 170 57.1
Cpa.g.sc137.28 Carica papaya HOM05D006592 ORTHO05D008122 5.0e-46 189.9 180 55.0
AagrBONN_evm.TU.Sc2ySwM_117.3387 Anthoceros agrestis HOM05D006592 ORTHO05D008122 5.7e-42 176.4 299 33.1
PRCOL_00001501 Prasinoderma coloniale HOM05D006592 ORTHO05D008122 1.8e-40 171.4 412 31.3
Cpa.g.sc137.29 Carica papaya HOM05D006592 ORTHO05D008122 3.1e-40 170.6 103 78.6
MCO09G637 Micromonas commoda HOM05D006592 ORTHO05D008122 2.9e-38 164.1 402 29.4
Lj4g0015969 Lotus japonicus HOM05D006592 ORTHO05D008122 1.2e-36 158.7 177 47.5
Psat4g134920 Pisum sativum HOM05D006592 ORTHO05D008122 1.6e-36 158.3 220 40.5
Glyma.16G106700 Glycine max HOM05D006592 ORTHO05D008122 8.8e-35 152.5 176 46.6
Sc01g0005990 Simmondsia chinensis HOM05D006592 ORTHO05D008122 4.1e-32 143.7 176 43.8
MBI14_g31659_MAGBIO Magnolia biondii HOM05D006592 ORTHO05D008122 2.2e-30 137.9 96 69.8
Zm00001eb071790 Zea mays HOM05D006592 ORTHO05D008122 1.3e-25 122.1 323 31.0
MBI02_g32478_MAGBIO Magnolia biondii HOM05D006592 ORTHO05D008122 1.7e-25 121.7 94 64.9
SEGI_06764 Sequoiadendron giganteum HOM05D006592 ORTHO05D008122 3.0e-19 100.9 136 41.9
Ciclev10004057m.g Citrus clementina HOM05D006592 ORTHO05D008122 2.2e-17 94.7 97 51.5
Dinv37458 Davidia involucrata HOM05D000040 ORTHO05D000267 4.1e-16 90.5 78 61.5
COL.COLO4_04363 Corchorus olitorius HOM05D003801 ORTHO05D008122 1.2e-15 89.0 63 57.1
C08p16710 Brassica napus HOM05D006592 ORTHO05D008122 3.1e-11 74.3 34 85.3
Hma1.2p1_1046F.1_g251530 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 3.4e-10 70.9 57 54.4


User provided reference genes

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