Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G49570 Arabidopsis lyrata HOM05D004101 ORTHO05D005221 0.0e+00 1899.0 938 100.0
AT1G31480 Arabidopsis thaliana HOM05D004101 ORTHO05D005221 0.0e+00 1800.0 938 94.8
Carub.0001s2990 Capsella rubella HOM05D004101 ORTHO05D005221 0.0e+00 1771.9 938 93.1
CARHR287040 Cardamine hirsuta HOM05D004101 ORTHO05D005221 0.0e+00 1704.1 938 89.8
Sp1g27280 Schrenkiella parvula HOM05D004101 ORTHO05D005221 0.0e+00 1677.1 939 88.5
Thhalv10006721m.g Eutrema salsugineum HOM05D004101 ORTHO05D005221 0.0e+00 1662.1 942 88.0
BcaB07g32808 Brassica carinata HOM05D004101 ORTHO05D005221 0.0e+00 1655.6 941 87.2
C05p30730 Brassica napus HOM05D004101 ORTHO05D005221 0.0e+00 1610.5 938 85.5
BcaC05g27176 Brassica carinata HOM05D004101 ORTHO05D005221 0.0e+00 1606.3 938 85.4
BolC5t31805H Brassica oleracea HOM05D004101 ORTHO05D005221 0.0e+00 1606.3 938 85.4
BraA08t33053Z Brassica rapa HOM05D004101 ORTHO05D005221 0.0e+00 1591.2 939 84.5
A08p10530 Brassica napus HOM05D004101 ORTHO05D005221 0.0e+00 1588.2 940 84.6
BraA09t39007Z Brassica rapa HOM05D004101 ORTHO05D005221 0.0e+00 1580.5 939 84.6
BcaC07g37755 Brassica carinata HOM05D004101 ORTHO05D005221 0.0e+00 1547.3 938 83.0
BolC8t48140H Brassica oleracea HOM05D004101 ORTHO05D005221 0.0e+00 1547.3 938 83.0
Aa31LG2G14460 Aethionema arabicum HOM05D004101 ORTHO05D005221 0.0e+00 1478.4 945 79.4
Aa31LG9G15840 Aethionema arabicum HOM05D004101 ORTHO05D005221 0.0e+00 1337.0 920 73.8
BcaB04g18153 Brassica carinata HOM05D004101 ORTHO05D005221 0.0e+00 1271.1 755 83.0
Ciclev10018750m.g Citrus clementina HOM05D004101 ORTHO05D005221 0.0e+00 1205.3 936 66.8
Thecc.08G177600 Theobroma cacao HOM05D004101 ORTHO05D005221 0.0e+00 1193.3 944 64.6
QL09p002038 Quercus lobata HOM05D004101 ORTHO05D005221 0.0e+00 1192.2 943 65.1
Cfa008084 Carpinus fangiana HOM05D004101 ORTHO05D005221 0.0e+00 1190.3 945 65.3
Atru.chr13.2487 Acer truncatum HOM05D004101 ORTHO05D005221 0.0e+00 1186.4 938 64.3
Gohir.A05G253700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1186.0 938 64.8
Gorai.009G267200 Gossypium raimondii HOM05D004101 ORTHO05D005221 0.0e+00 1185.6 938 64.8
Gohir.A02G087700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1183.7 938 64.7
Gorai.005G116600 Gossypium raimondii HOM05D004101 ORTHO05D005221 0.0e+00 1182.5 934 65.0
CiPaw.03G015400 Carya illinoinensis HOM05D004101 ORTHO05D005221 0.0e+00 1179.1 948 63.8
Duzib177G1024 Durio zibethinus HOM05D004101 ORTHO05D005221 0.0e+00 1176.0 978 61.8
GSVIVG01036377001 Vitis vinifera HOM05D004101 ORTHO05D005221 0.0e+00 1167.9 941 63.2
Manes.18G117901 Manihot esculenta HOM05D004101 ORTHO05D005221 0.0e+00 1166.8 967 63.2
Potri.013G099700 Populus trichocarpa HOM05D004101 ORTHO05D005221 0.0e+00 1166.8 939 64.9
Dinv05108 Davidia involucrata HOM05D004101 ORTHO05D005221 0.0e+00 1156.0 949 62.8
Manes.02G221381 Manihot esculenta HOM05D004101 ORTHO05D005221 0.0e+00 1154.4 950 63.1
TWI18G0503 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 0.0e+00 1146.7 943 62.9
Glyma.09G234500 Glycine max HOM05D004101 ORTHO05D005221 0.0e+00 1146.0 931 63.5
Potri.019G072300 Populus trichocarpa HOM05D004101 ORTHO05D005221 0.0e+00 1142.5 937 62.4
Dinv36168 Davidia involucrata HOM05D004101 ORTHO05D005221 0.0e+00 1141.7 970 61.6
Prupe.1G442600 Prunus persica HOM05D004101 ORTHO05D005221 0.0e+00 1140.6 952 62.0
Nn5g27278 Nelumbo nucifera HOM05D004101 ORTHO05D005221 0.0e+00 1137.9 961 60.8
TAR625G0099 Trochodendron aralioides HOM05D004101 ORTHO05D005221 0.0e+00 1137.9 978 61.7
Lalb_Chr16g0391261 Lupinus albus HOM05D004101 ORTHO05D005221 0.0e+00 1136.7 936 63.6
TWI12G0255 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 0.0e+00 1134.8 943 62.7
VMungo1127G2207 Vigna mungo HOM05D004101 ORTHO05D005221 0.0e+00 1134.4 936 63.6
Actinidia29382 Actinidia chinensis HOM05D004101 ORTHO05D005221 0.0e+00 1132.9 950 61.3
PGR042G3616 Punica granatum HOM05D004101 ORTHO05D005221 0.0e+00 1131.3 952 62.9
TAR383G0434 Trochodendron aralioides HOM05D004101 ORTHO05D005221 0.0e+00 1129.0 971 61.0
arahy.Tifrunner.gnm1.ann1.BP0NKM Arachis hypogaea HOM05D004101 ORTHO05D005221 0.0e+00 1126.7 946 62.3
CANSAT78G1092 Cannabis sativa HOM05D004101 ORTHO05D005221 0.0e+00 1126.7 974 61.0
CSS0023016 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 0.0e+00 1124.8 946 62.1
Phvul.011G002700 Phaseolus vulgaris HOM05D004101 ORTHO05D005221 0.0e+00 1117.4 938 62.2
CsaV3_2G033160 Cucumis sativus L. HOM05D004101 ORTHO05D005221 0.0e+00 1115.1 949 60.8
RcHm_v2.0_Chr6g0306901 Rosa chinensis HOM05D004101 ORTHO05D005221 0.0e+00 1114.4 923 63.1
Aqoxy6G00101 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1106.7 1015 57.8
Ca_19680_v3 Cicer arietinum L. HOM05D004101 ORTHO05D005221 0.0e+00 1106.7 934 61.7
CSS0032109 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 0.0e+00 1104.4 931 61.5
Oeu028926.1 Olea europaea HOM05D004101 ORTHO05D005221 0.0e+00 1104.0 941 60.9
Aqoxy6G01398 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1103.6 1017 57.8
Medtr4g033490 Medicago truncatula HOM05D004101 ORTHO05D005221 0.0e+00 1102.4 935 61.8
Solyc01g008320.3 Solanum lycopersicum HOM05D004101 ORTHO05D005221 0.0e+00 1102.0 934 59.9
MD15G1088500 Malus domestica HOM05D004101 ORTHO05D005221 0.0e+00 1101.7 940 61.5
Psat7g146680 Pisum sativum HOM05D004101 ORTHO05D005221 0.0e+00 1101.3 933 62.0
MSTRG.12725 Avicennia marina HOM05D004101 ORTHO05D005221 0.0e+00 1100.9 944 60.8
Lj3g0009901 Lotus japonicus HOM05D004101 ORTHO05D005221 0.0e+00 1099.3 924 61.7
Aqoxy2G02197 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1097.4 1015 57.4
Gohir.D02G102700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1097.4 853 66.0
Sopen01g003840 Solanum pennellii HOM05D004101 ORTHO05D005221 0.0e+00 1097.4 928 60.1
Sabra13G0085500 Salix brachista HOM05D004101 ORTHO05D005221 0.0e+00 1097.0 1016 58.5
MD08G1108000 Malus domestica HOM05D004101 ORTHO05D005221 0.0e+00 1091.3 945 61.0
ClCG11G008940 Citrullus lanatus HOM05D004101 ORTHO05D005221 0.0e+00 1086.6 949 60.5
arahy.Tifrunner.gnm1.ann1.FM3HJM Arachis hypogaea HOM05D004101 ORTHO05D005221 0.0e+00 1085.5 1035 56.8
Sed0018643 Sechium edule HOM05D004101 ORTHO05D005221 0.0e+00 1082.4 947 60.1
EL10Ac1g01668 Beta vulgaris HOM05D004101 ORTHO05D005221 0.0e+00 1081.2 964 59.2
FvH4_2g35070 Fragaria vesca HOM05D004101 ORTHO05D005221 0.0e+00 1080.5 951 60.5
SalBow2G0849 Salvia bowleyana HOM05D004101 ORTHO05D005221 0.0e+00 1075.8 996 58.5
SGA_v2.0_scaffold158G37476 Striga asiatica HOM05D004101 ORTHO05D005221 6.4e-312 1073.5 975 58.5
THA.LOC104812717 Tarenaya hassleriana HOM05D004101 ORTHO05D005221 6.4e-312 1073.5 764 72.0
HanXRQChr03g0062111 Helianthus annuus HOM05D004101 ORTHO05D005221 2.4e-309 1065.4 926 59.2
Eucgr.F02954 Eucalyptus grandis HOM05D004101 ORTHO05D005221 2.9e-307 1058.5 948 59.6
SGA_v2.0_scaffold120G33012 Striga asiatica HOM05D004101 ORTHO05D005221 5.0e-307 1057.7 996 57.7
CANSAT21G1017 Cannabis sativa HOM05D004101 ORTHO05D005221 2.5e-306 1055.4 919 59.2
FAN20G0554 Fragaria x ananassa HOM05D004101 ORTHO05D005221 1.2e-305 1053.1 944 59.9
Cc10_g08720 Coffea canephora HOM05D004101 ORTHO05D005221 1.6e-305 1052.7 978 58.1
Haze_13953 Corylus avellana HOM05D004101 ORTHO05D005221 2.8e-305 1052.0 1048 55.7
Migut.D00784 Erythranthe guttata HOM05D004101 ORTHO05D005221 6.1e-305 1050.8 934 59.1
FAN27G2707 Fragaria x ananassa HOM05D004101 ORTHO05D005221 2.3e-304 1048.9 954 59.3
ATR1089G044 Amborella trichopoda HOM05D004101 ORTHO05D005221 3.0e-304 1048.5 967 57.5
CAN.G282.41 Capsicum annuum HOM05D004101 ORTHO05D005221 6.4e-302 1040.8 956 57.4
PSO017G3151 Papaver somniferum HOM05D004101 ORTHO05D005221 2.7e-300 1035.4 937 57.7
Atru.chr13.2489 Acer truncatum HOM05D004101 ORTHO05D005221 3.5e-300 1035.0 948 58.0
PSO170G4791 Papaver somniferum HOM05D004101 ORTHO05D005221 2.3e-299 1032.3 943 56.3
ECA240G3381 Erigeron canadensis HOM05D004101 ORTHO05D005221 1.2e-297 1026.5 939 57.3
ECA234G0584 Erigeron canadensis HOM05D004101 ORTHO05D005221 3.1e-296 1021.9 921 57.9
Sabra19G0083800 Salix brachista HOM05D004101 ORTHO05D005221 4.0e-296 1021.5 1055 53.3
A09p34710 Brassica napus HOM05D004101 ORTHO05D005221 5.2e-296 1021.1 661 78.2
DCAR_019079 Daucus carota HOM05D004101 ORTHO05D005221 2.4e-293 1012.3 1063 51.9
Atru.chr13.2501 Acer truncatum HOM05D004101 ORTHO05D005221 4.6e-292 1008.1 827 62.5
COL.COLO4_06914 Corchorus olitorius HOM05D004101 ORTHO05D005221 1.7e-291 1006.1 851 62.4
Peaxi162Scf00021g02415 Petunia axillaris HOM05D004101 ORTHO05D005221 3.0e-291 1005.4 936 57.5
PSO017G5679 Papaver somniferum HOM05D004101 ORTHO05D005221 6.6e-291 1004.2 904 59.1
PSO170G4509 Papaver somniferum HOM05D004101 ORTHO05D005221 6.6e-291 1004.2 896 59.9
Lsat_1_v5_gn_7_42860 Lactuca sativa HOM05D004101 ORTHO05D005221 1.4e-288 996.5 917 57.6
Os08g0110700 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 2.0e-287 992.6 931 55.9
Nitab4.5_0000069g0130 Nicotiana tabacum HOM05D004101 ORTHO05D005221 4.4e-287 991.5 868 60.1
Lj9A698G58 Lonicera japonica HOM05D004101 ORTHO05D005221 1.4e-285 986.5 943 56.1
Zm00001eb174090 Zea mays HOM05D004101 ORTHO05D005221 7.8e-284 980.7 972 54.0
MELO3C008088.2 Cucumis melo HOM05D004101 ORTHO05D005221 3.0e-283 978.8 862 59.5
HPP92_008596 Vanilla planifolia HOM05D004101 ORTHO05D005221 2.5e-282 975.7 1060 51.6
Zm00001eb260480 Zea mays HOM05D004101 ORTHO05D005221 1.2e-279 966.8 936 55.0
Hund26650 Selenicereus undatus HOM05D004101 ORTHO05D005221 5.8e-279 964.5 1180 48.1
FAN15G3699 Fragaria x ananassa HOM05D004101 ORTHO05D005221 4.9e-278 961.4 939 55.9
AUR62034351 Chenopodium quinoa HOM05D004101 ORTHO05D005221 2.1e-276 956.1 966 54.8
AUR62022357 Chenopodium quinoa HOM05D004101 ORTHO05D005221 5.6e-274 948.0 956 54.1
Sc26g0002190 Simmondsia chinensis HOM05D004101 ORTHO05D005221 4.4e-271 938.3 810 60.2
unitig_8.g3682 Utricularia gibba HOM05D004101 ORTHO05D005221 3.4e-247 859.0 914 51.4
Mapoly0151s0040 Marchantia polymorpha HOM05D004101 ORTHO05D005221 1.4e-245 853.6 982 47.9
AagrBONN_evm.TU.Sc2ySwM_228.4088 Anthoceros agrestis HOM05D004101 ORTHO05D005221 3.9e-243 845.5 861 51.6
Gohir.D05G255640 Gossypium hirsutum HOM05D004101 ORTHO05D005221 2.1e-241 839.7 685 64.2
Ah.07g205660 Amaranthus hybridus HOM05D004101 ORTHO05D005221 7.2e-237 824.7 952 50.0
SMO200G0043 Selaginella moellendorffii HOM05D004101 ORTHO05D005221 1.3e-235 820.5 846 51.1
Pp3c3_10170 Physcomitrium patens HOM05D004101 ORTHO05D005221 6.3e-233 811.6 1126 42.5
Nitab4.5_0009427g0010 Nicotiana tabacum HOM05D004101 ORTHO05D005221 1.6e-207 727.2 724 54.3
TPR.G31924 Trifolium pratense HOM05D004101 ORTHO05D005221 2.0e-186 657.1 642 56.2
CDE02G0702 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 1.3e-185 654.4 671 55.3
Migut.N00698 Erythranthe guttata HOM05D004101 ORTHO05D005221 4.9e-185 652.5 415 77.1
Rhsim08G0116000 Rhododendron simsii HOM05D004101 ORTHO05D005221 7.3e-165 585.5 760 46.8
vmacro14428 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 5.6e-157 559.3 361 75.3
vmacro17837 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 3.6e-156 556.6 411 68.9
Lj2A387T50 Lonicera japonica HOM05D004101 ORTHO05D005221 1.4e-155 554.7 387 72.6
Cpa.g.sc24.82 Carica papaya HOM05D004101 ORTHO05D005221 3.5e-135 486.9 462 58.2
Oeu006618.1 Olea europaea HOM05D004101 ORTHO05D005221 1.5e-125 454.9 287 75.6
HPP92_008553 Vanilla planifolia HOM05D004101 ORTHO05D005221 6.3e-124 449.5 296 73.0
Lsat_1_v5_gn_5_98501 Lactuca sativa HOM05D004101 ORTHO05D007752 2.3e-118 431.0 294 71.4
vmacro17836 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 2.4e-115 421.0 739 38.6
Lj2A387G43 Lonicera japonica HOM05D004101 ORTHO05D005221 9.1e-115 419.1 582 45.2
HPP92_008552 Vanilla planifolia HOM05D004101 ORTHO05D005221 1.0e-113 415.6 567 44.8
Gohir.D05G255660 Gossypium hirsutum HOM05D004101 ORTHO05D005221 4.4e-109 400.2 476 48.9
Migut.N00699 Erythranthe guttata HOM05D004101 ORTHO05D005221 1.1e-101 375.6 321 57.9
CBR_g19663 Chara braunii HOM05D004101 ORTHO05D005221 9.1e-99 365.9 326 56.1
Cpa.g.sc24.85 Carica papaya HOM05D004101 ORTHO05D005221 6.7e-94 349.7 224 76.8
BcaB04g18154 Brassica carinata HOM05D004101 ORTHO05D005221 2.3e-70 271.6 169 83.4
A09p34730 Brassica napus HOM05D004101 ORTHO05D005221 6.2e-63 246.9 148 85.1
vmacro14430 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 2.0e-53 215.3 139 70.5
CDE02G4445 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 6.2e-47 193.7 217 47.9
QL93p1879_0034 Quercus lobata HOM05D004101 ORTHO05D005221 3.5e-42 177.9 137 65.0
SEGI_28351 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 8.7e-33 146.7 93 74.2
Aqoxy2G00645 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 9.9e-29 133.3 121 51.2
SEGI_18218 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 3.2e-27 128.3 76 80.3
PSO017G1167 Papaver somniferum HOM05D004101 ORTHO05D005221 1.2e-26 126.3 114 50.9
BolC1t03898H Brassica oleracea HOM05D010251 ORTHO05D005221 4.3e-24 117.9 160 45.0
SEGI_38945 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 7.4e-24 117.1 86 60.5
Cpa.g.sc24.79 Carica papaya HOM05D004101 ORTHO05D005221 1.1e-19 103.2 66 71.2
vmacro14429 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 3.0e-17 95.1 280 32.5
SHI03798 Sapria himalayana HOM05D004101 ORTHO05D005221 8.7e-17 93.6 279 30.5
BcaC05g27051 Brassica carinata HOM05D004101 ORTHO05D027158 1.3e-15 89.7 144 41.0
Medtr5g080490 Medicago truncatula HOM05D004101 ORTHO05D005221 1.6e-15 89.4 61 68.9
COL.COLO4_06915 Corchorus olitorius HOM05D004101 ORTHO05D005221 4.8e-15 87.8 47 87.2
SMO200G0098 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 4.5e-13 81.3 82 51.2
BolC2t10203H Brassica oleracea HOM05D004101 ORTHO05D027158 8.4e-12 77.0 56 60.7
BolC2t10210H Brassica oleracea HOM05D004101 ORTHO05D027158 8.4e-12 77.0 56 60.7
Pp3c3_10160 Physcomitrium patens HOM05D004101 ORTHO05D005221 2.5e-11 75.5 66 47.0
A01p24750 Brassica napus HOM05D004101 ORTHO05D027158 1.6e-10 72.8 56 58.9
Os07g0406600 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 1.1e-08 66.6 51 60.8
Lsat_1_v5_gn_5_153621 Lactuca sativa HOM05D004101 ORTHO05D005221 4.3e-08 64.7 68 48.5
BcaB04g18222 Brassica carinata HOM05D010251 ORTHO05D090319 1.3e-07 63.2 87 40.2
SMO200G0135 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 2.2e-07 62.4 62 50.0
VMungo0251G0072 Vigna mungo HOM05D004101 ORTHO05D005221 2.8e-07 62.0 43 62.8
C05p49240 Brassica napus HOM05D019709 ORTHO05D001800 5.3e-06 57.8 45 66.7


User provided reference genes

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