Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G49340 Arabidopsis lyrata HOM05D007312 ORTHO05D009209 1.2e-65 253.1 126 100.0
AT1G31170 Arabidopsis thaliana HOM05D007312 ORTHO05D009209 2.8e-64 248.4 126 98.4
CARHR030640 Cardamine hirsuta HOM05D007312 ORTHO05D009209 7.0e-63 243.8 126 95.2
Thhalv10009117m.g Eutrema salsugineum HOM05D007312 ORTHO05D009209 5.9e-62 240.7 126 95.2
Sp1g26990 Schrenkiella parvula HOM05D007312 ORTHO05D009209 2.5e-60 235.3 127 93.7
BcaB04g18176 Brassica carinata HOM05D007312 ORTHO05D009209 3.3e-60 235.0 128 95.3
BcaC07g37774 Brassica carinata HOM05D007312 ORTHO05D009209 5.6e-60 234.2 123 93.5
Carub.0001s2957 Capsella rubella HOM05D007312 ORTHO05D009209 1.2e-59 233.0 122 95.9
A08p10710 Brassica napus HOM05D007312 ORTHO05D009209 2.0e-57 225.7 123 93.5
BraA08t33069Z Brassica rapa HOM05D007312 ORTHO05D009209 2.0e-57 225.7 123 93.5
BolC8t48163H Brassica oleracea HOM05D007312 ORTHO05D009209 3.4e-57 224.9 121 94.2
TWI63G0684 Tripterygium wilfordii HOM05D007312 ORTHO05D009209 9.5e-52 206.8 126 81.0
MD05G1250400 Malus domestica HOM05D007312 ORTHO05D009209 8.9e-50 200.3 129 78.3
Ca_18754_v3 Cicer arietinum L. HOM05D007312 ORTHO05D009209 1.5e-49 199.5 128 78.1
Gohir.A12G046700 Gossypium hirsutum HOM05D007312 ORTHO05D009209 2.0e-49 199.1 127 80.3
Medtr4g084180 Medicago truncatula HOM05D007312 ORTHO05D009209 3.4e-49 198.4 126 76.2
Peaxi162Scf00149g00224 Petunia axillaris HOM05D007312 ORTHO05D009209 3.4e-49 198.4 126 78.6
Atru.chr10.560 Acer truncatum HOM05D007312 ORTHO05D009209 5.8e-49 197.6 126 77.8
TPR.G38271 Trifolium pratense HOM05D007312 ORTHO05D009209 5.8e-49 197.6 126 77.0
Sopen02g017880 Solanum pennellii HOM05D007312 ORTHO05D009209 7.5e-49 197.2 128 77.3
PGSC0003DMG400010438 Solanum tuberosum HOM05D007312 ORTHO05D009209 7.5e-49 197.2 128 77.3
Aa31LG2G15110 Aethionema arabicum HOM05D007312 ORTHO05D009209 4.9e-48 194.5 107 87.9
Ciclev10017175m.g Citrus clementina HOM05D007312 ORTHO05D009209 6.4e-48 194.1 130 76.9
CANSAT35G0781 Cannabis sativa HOM05D007312 ORTHO05D009209 1.1e-47 193.4 126 76.2
Solyc02g068710.3 Solanum lycopersicum HOM05D007312 ORTHO05D009209 1.1e-47 193.4 128 76.6
Actinidia22408 Actinidia chinensis HOM05D007312 ORTHO05D009209 1.9e-47 192.6 126 77.0
PGR042G3076 Punica granatum HOM05D007312 ORTHO05D009209 1.9e-47 192.6 127 77.2
Manes.16G055800 Manihot esculenta HOM05D007312 ORTHO05D009209 2.4e-47 192.2 127 74.8
Potri.012G124500 Populus trichocarpa HOM05D007312 ORTHO05D009209 3.2e-47 191.8 127 76.4
QL11p016282 Quercus lobata HOM05D007312 ORTHO05D009209 3.2e-47 191.8 126 75.4
Duzib052G0161 Durio zibethinus HOM05D007312 ORTHO05D009209 5.4e-47 191.0 129 74.4
CiPaw.09G076400 Carya illinoinensis HOM05D007312 ORTHO05D009209 9.2e-47 190.3 127 74.8
Cc09_g06000 Coffea canephora HOM05D007312 ORTHO05D009209 9.2e-47 190.3 126 76.2
Nitab4.5_0007745g0050 Nicotiana tabacum HOM05D007312 ORTHO05D009209 1.2e-46 189.9 128 76.6
TAR624G0630 Trochodendron aralioides HOM05D007312 ORTHO05D009209 1.6e-46 189.5 126 74.6
ClCG01G009570 Citrullus lanatus HOM05D007312 ORTHO05D009209 4.6e-46 188.0 130 74.6
MELO3C021735.2 Cucumis melo HOM05D007312 ORTHO05D009209 4.6e-46 188.0 130 74.6
CsaV3_1G046220 Cucumis sativus L. HOM05D007312 ORTHO05D009209 7.8e-46 187.2 130 74.6
THA.LOC104798553 Tarenaya hassleriana HOM05D007312 ORTHO05D009209 7.8e-46 187.2 129 75.2
Nitab4.5_0001288g0230 Nicotiana tabacum HOM05D007312 ORTHO05D009209 2.3e-45 185.7 127 74.0
Hma1.2p1_1005F.1_g246920 Hydrangea macrophylla HOM05D007312 ORTHO05D009209 3.0e-45 185.3 131 74.0
CSS0025621 Camellia sinensis var. sinensis HOM05D007312 ORTHO05D009209 6.6e-45 184.1 129 70.5
MSTRG.7597 Avicennia marina HOM05D007312 ORTHO05D009209 8.6e-45 183.7 127 73.2
Sabra12G0094300 Salix brachista HOM05D007312 ORTHO05D009209 8.6e-45 183.7 122 76.2
Glyma.20G019100 Glycine max HOM05D007312 ORTHO05D009209 1.1e-44 183.3 129 71.3
VMungo0251G1106 Vigna mungo HOM05D007312 ORTHO05D009209 1.9e-44 182.6 129 69.8
GSVIVG01012104001 Vitis vinifera HOM05D007312 ORTHO05D009209 2.5e-44 182.2 126 71.4
Lj4g0021225 Lotus japonicus HOM05D007312 ORTHO05D009209 3.3e-44 181.8 129 70.5
Phvul.002G097300 Phaseolus vulgaris HOM05D007312 ORTHO05D009209 3.3e-44 181.8 129 69.0
HanXRQChr12g0381571 Helianthus annuus HOM05D007312 ORTHO05D009209 1.6e-43 179.5 130 71.5
ECA234G3951 Erigeron canadensis HOM05D007312 ORTHO05D009209 2.1e-43 179.1 131 72.5
Lj2A350T56 Lonicera japonica HOM05D007312 ORTHO05D009209 3.6e-43 178.3 123 71.5
Psat7g129800 Pisum sativum HOM05D007312 ORTHO05D009209 3.6e-43 178.3 116 76.7
RcHm_v2.0_Chr5g0020311 Rosa chinensis HOM05D007312 ORTHO05D009209 4.7e-43 177.9 129 69.0
EL10Ac5g12681 Beta vulgaris HOM05D007312 ORTHO05D009209 6.2e-43 177.6 126 70.6
AUR62010557 Chenopodium quinoa HOM05D007312 ORTHO05D009209 1.1e-42 176.8 121 71.1
Eucgr.E04250 Eucalyptus grandis HOM05D007312 ORTHO05D009209 1.4e-42 176.4 137 69.3
Lsat_1_v5_gn_3_106761 Lactuca sativa HOM05D007312 ORTHO05D009209 2.3e-42 175.6 120 75.0
Lalb_Chr16g0385171 Lupinus albus HOM05D007312 ORTHO05D009209 3.1e-42 175.3 127 67.7
PSO541G3426 Papaver somniferum HOM05D007312 ORTHO05D009209 3.1e-42 175.3 126 67.5
SalBow8G4543 Salvia bowleyana HOM05D007312 ORTHO05D009209 3.1e-42 175.3 123 73.2
MBI18_g11473_MAGBIO Magnolia biondii HOM05D007312 ORTHO05D009209 4.0e-42 174.9 133 66.2
RhsimUnG0109200 Rhododendron simsii HOM05D007312 ORTHO05D009209 5.2e-42 174.5 121 75.2
Zm00001eb375250 Zea mays HOM05D007312 ORTHO05D009209 5.2e-42 174.5 115 73.9
SGA_v2.0_scaffold298G47689 Striga asiatica HOM05D007312 ORTHO05D009209 6.8e-42 174.1 129 72.9
Rhsim13G0146500 Rhododendron simsii HOM05D007312 ORTHO05D009209 3.4e-41 171.8 121 74.4
Os06g0174300 Oryza sativa ssp. japonica HOM05D007312 ORTHO05D009209 4.4e-41 171.4 110 76.4
Hund14701 Selenicereus undatus HOM05D007312 ORTHO05D009209 7.5e-41 170.6 124 69.4
FvH4_3g12430 Fragaria vesca HOM05D007312 ORTHO05D009209 3.7e-40 168.3 124 68.5
Migut.M01988 Erythranthe guttata HOM05D007312 ORTHO05D009209 8.3e-40 167.2 103 77.7
unitig_32.g10991 Utricularia gibba HOM05D000532 ORTHO05D009209 8.3e-40 167.2 94 79.8
AUR62017332 Chenopodium quinoa HOM05D007312 ORTHO05D009209 1.1e-39 166.8 121 67.8
CDE02G1125 Ceratophyllum demersum HOM05D007312 ORTHO05D009209 2.4e-39 165.6 129 65.9
Ah.01g020500 Amaranthus hybridus HOM05D007312 ORTHO05D009209 3.2e-39 165.2 121 69.4
arahy.Tifrunner.gnm1.ann1.XDA00H Arachis hypogaea HOM05D007312 ORTHO05D009209 3.2e-39 165.2 125 68.8
CAN.G149.9 Capsicum annuum HOM05D007312 ORTHO05D009209 3.2e-39 165.2 99 79.8
vmacro03527 Vaccinium macrocarpon HOM05D007312 ORTHO05D009209 2.1e-38 162.5 98 81.6
arahy.Tifrunner.gnm1.ann1.FJ5394 Arachis hypogaea HOM05D007312 ORTHO05D009209 4.6e-38 161.4 107 73.8
HPP92_010212 Vanilla planifolia HOM05D007312 ORTHO05D009209 1.7e-37 159.5 123 67.5
Haze_06075 Corylus avellana HOM05D007312 ORTHO05D009209 3.0e-37 158.7 123 65.0
Aqoxy1G01718 Aquilegia oxysepala HOM05D007312 ORTHO05D009209 5.1e-37 157.9 133 61.7
Nn7g38246 Nelumbo nucifera HOM05D007312 ORTHO05D009209 4.3e-36 154.8 126 68.3
Pp3c7_15740 Physcomitrium patens HOM05D007312 ORTHO05D009209 1.6e-35 152.9 113 65.5
SMO145G0246 Selaginella moellendorffii HOM05D007312 ORTHO05D009209 3.1e-34 148.7 85 77.6
Mapoly0066s0018 Marchantia polymorpha HOM05D007312 ORTHO05D009209 2.4e-31 139.0 167 47.9
Cre17.g729950 Chlamydomonas reinhardtii HOM05D007312 ORTHO05D009209 1.3e-29 133.3 88 69.3
CBR_g4 Chara braunii HOM05D007312 ORTHO05D009209 3.3e-28 128.6 91 64.8
RcHm_v2.0_Chr2g0126261 Rosa chinensis HOM05D007312 ORTHO05D009209 7.3e-28 127.5 101 65.3
Prupe.4G113200 Prunus persica HOM05D007312 ORTHO05D009209 6.8e-26 120.9 95 69.5
HPP92_010191 Vanilla planifolia HOM05D007312 ORTHO05D009209 5.8e-25 117.9 128 55.5
Oeu056034.1 Olea europaea HOM05D007312 ORTHO05D009209 6.4e-24 114.4 89 69.7
Dinv25919 Davidia involucrata HOM05D007312 ORTHO05D009209 1.4e-23 113.2 90 67.8
Cpa.g.sc5085.1 Carica papaya HOM05D007312 ORTHO05D009209 7.8e-22 107.5 78 74.4
Gorai.008G048300 Gossypium raimondii HOM05D007312 ORTHO05D009209 1.1e-20 103.6 80 73.8
Gohir.D12G045700 Gossypium hirsutum HOM05D007312 ORTHO05D009209 1.5e-20 103.2 80 73.8
Thecc.02G008700 Theobroma cacao HOM05D007312 ORTHO05D009209 7.3e-20 100.9 85 67.1
FAN25G0614 Fragaria x ananassa HOM05D007312 ORTHO05D009209 2.8e-19 99.0 96 59.4
Sc01g0008940 Simmondsia chinensis HOM05D007312 ORTHO05D009209 4.9e-16 88.2 81 60.5
Lalb_Chr09g0328681 Lupinus albus HOM05D007312 ORTHO05D009209 9.3e-15 84.0 41 85.4
Sed0015339 Sechium edule HOM05D007312 ORTHO05D009209 9.3e-15 84.0 85 62.4
ATR0752G167 Amborella trichopoda HOM05D007312 ORTHO05D009209 1.6e-14 83.2 93 52.7
FAN21G0246 Fragaria x ananassa HOM05D007312 ORTHO05D009209 2.1e-14 82.8 84 54.8
COL.COLO4_17652 Corchorus olitorius HOM05D007312 ORTHO05D009209 3.5e-14 82.0 84 51.2
FAN16G3369 Fragaria x ananassa HOM05D007312 ORTHO05D009209 7.9e-14 80.9 81 56.8
Sabra12G0063500 Salix brachista HOM05D007312 ORTHO05D009209 1.3e-13 80.1 42 88.1
Lalb_Chr09g0328671 Lupinus albus HOM05D007312 ORTHO05D009209 2.9e-08 62.4 92 41.3
Potri.015G124601 Populus trichocarpa HOM05D007312 ORTHO05D009209 2.9e-08 62.4 42 66.7


User provided reference genes

Program Settings