Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G49060 Arabidopsis lyrata HOM05D004603 ORTHO05D005244 2.5e-110 402.1 207 100.0
AT1G34570 Arabidopsis thaliana HOM05D004603 ORTHO05D005244 4.1e-92 341.7 209 87.1
Carub.0001s3260 Capsella rubella HOM05D004603 ORTHO05D005244 1.0e-87 327.0 207 83.1
AT3G15750 Arabidopsis thaliana HOM05D004603 ORTHO05D005244 1.7e-77 293.1 177 88.7
Carub.0007s3712 Capsella rubella HOM05D004603 ORTHO05D005244 1.2e-72 276.9 182 80.2
AL7G44820 Arabidopsis lyrata HOM05D004603 ORTHO05D005244 5.2e-71 271.6 200 75.5
BcaB04g17864 Brassica carinata HOM05D004603 ORTHO05D005244 4.1e-68 261.9 210 70.0
BcaC07g37535 Brassica carinata HOM05D004603 ORTHO05D005244 2.2e-66 256.1 214 67.3
BcaC08g43772 Brassica carinata HOM05D004603 ORTHO05D005244 9.4e-65 250.8 207 66.7
CARHR033890 Cardamine hirsuta HOM05D004603 ORTHO05D005244 3.6e-64 248.8 211 64.5
A08p08230 Brassica napus HOM05D000499 ORTHO05D002825 8.0e-64 247.7 210 66.7
Aa31LG6G8480 Aethionema arabicum HOM05D004603 ORTHO05D005244 4.4e-62 241.9 212 64.6
BolC8t47853H Brassica oleracea HOM05D000499 ORTHO05D002825 1.6e-59 233.4 201 65.7
BraA08t32841Z Brassica rapa HOM05D000499 ORTHO05D002825 1.6e-59 233.4 203 65.0
Sp1g29690 Schrenkiella parvula HOM05D004603 ORTHO05D005244 1.1e-57 227.3 191 66.5
BcaB07g33112 Brassica carinata HOM05D004603 ORTHO05D005244 2.7e-56 222.6 178 68.5
C06p11480 Brassica napus HOM05D004603 ORTHO05D005244 2.0e-54 216.5 182 65.9
Thhalv10009671m.g Eutrema salsugineum HOM05D004603 ORTHO05D005244 2.9e-50 202.6 142 73.9
THA.LOC104819124 Tarenaya hassleriana HOM05D004603 ORTHO05D005244 2.9e-50 202.6 213 56.8
Sp7g17090 Schrenkiella parvula HOM05D004603 ORTHO05D005244 1.5e-41 173.7 150 64.0
Gohir.D04G071400 Gossypium hirsutum HOM05D004603 ORTHO05D005244 6.1e-40 168.3 205 46.8
Gorai.012G080400 Gossypium raimondii HOM05D004603 ORTHO05D005244 8.0e-40 167.9 208 46.2
Cpa.g.sc197.6 Carica papaya HOM05D004603 ORTHO05D005244 3.7e-37 159.1 207 45.9
COL.COLO4_25832 Corchorus olitorius HOM05D004603 ORTHO05D005244 1.1e-36 157.5 204 43.1
Manes.11G002700 Manihot esculenta HOM05D004603 ORTHO05D005244 1.4e-36 157.1 205 44.9
COL.COLO4_29439 Corchorus olitorius HOM05D004603 ORTHO05D005244 6.0e-35 151.8 200 43.5
Thecc.10G006000 Theobroma cacao HOM05D004603 ORTHO05D005244 6.0e-35 151.8 208 43.8
Sabra01G0018000 Salix brachista HOM05D004603 ORTHO05D005244 7.8e-35 151.4 207 44.4
Ca_14312_v3 Cicer arietinum L. HOM05D004603 ORTHO05D005244 1.0e-34 151.0 207 43.0
PGR031G2747 Punica granatum HOM05D004603 ORTHO05D005244 1.0e-34 151.0 209 44.5
Duzib114G1022 Durio zibethinus HOM05D004603 ORTHO05D005244 2.3e-34 149.8 205 42.4
Actinidia30721 Actinidia chinensis HOM05D004603 ORTHO05D005244 6.6e-34 148.3 164 50.6
Potri.001G024000 Populus trichocarpa HOM05D004603 ORTHO05D005244 6.6e-34 148.3 204 44.6
GSVIVG01022405001 Vitis vinifera HOM05D004603 ORTHO05D005244 4.3e-33 145.6 215 41.4
Duzib128G1390 Durio zibethinus HOM05D004603 ORTHO05D005244 5.6e-33 145.2 208 41.8
CiPaw.14G006000 Carya illinoinensis HOM05D004603 ORTHO05D005244 7.3e-33 144.8 210 42.4
Eucgr.G03257 Eucalyptus grandis HOM05D004603 ORTHO05D005244 7.3e-33 144.8 216 41.2
TPR.G3881 Trifolium pratense HOM05D004603 ORTHO05D005244 1.2e-32 144.1 176 44.3
Atru.chr11.2495 Acer truncatum HOM05D004603 ORTHO05D005244 2.1e-32 143.3 213 42.3
arahy.Tifrunner.gnm1.ann1.30UV9I Arachis hypogaea HOM05D004603 ORTHO05D005244 2.1e-32 143.3 206 39.8
arahy.Tifrunner.gnm1.ann1.FEA8VP Arachis hypogaea HOM05D004603 ORTHO05D005244 2.1e-32 143.3 206 39.3
Atru.chr11.2466 Acer truncatum HOM05D004603 ORTHO05D005244 2.8e-32 142.9 213 42.3
Ciclev10032728m.g Citrus clementina HOM05D004603 ORTHO05D005244 3.6e-32 142.5 214 41.6
FAN03G3254 Fragaria x ananassa HOM05D004603 ORTHO05D005244 3.6e-32 142.5 217 42.4
QL04p013733 Quercus lobata HOM05D004603 ORTHO05D005244 3.6e-32 142.5 216 41.7
RcHm_v2.0_Chr1g0319701 Rosa chinensis HOM05D004603 ORTHO05D005244 3.6e-32 142.5 210 42.9
arahy.Tifrunner.gnm1.ann1.S7XKIQ Arachis hypogaea HOM05D004603 ORTHO05D005244 4.7e-32 142.1 206 39.3
MD02G1294600 Malus domestica HOM05D004603 ORTHO05D005244 8.0e-32 141.4 218 39.9
Sed0015753 Sechium edule HOM05D004603 ORTHO05D005244 8.0e-32 141.4 214 40.2
TWI38G0287 Tripterygium wilfordii HOM05D004603 ORTHO05D005244 1.1e-31 141.0 205 41.5
Lalb_Chr19g0138841 Lupinus albus HOM05D004603 ORTHO05D005244 1.4e-31 140.6 207 42.5
FAN06G0782 Fragaria x ananassa HOM05D000001 ORTHO05D009083 2.3e-31 139.8 218 42.2
Potri.003G201500 Populus trichocarpa HOM05D004603 ORTHO05D005244 2.3e-31 139.8 207 43.0
Phvul.010G125900 Phaseolus vulgaris HOM05D004603 ORTHO05D005244 3.1e-31 139.4 211 40.8
Rhsim07G0062700 Rhododendron simsii HOM05D004603 ORTHO05D005244 3.1e-31 139.4 213 42.3
vmacro13728 Vaccinium macrocarpon HOM05D004603 ORTHO05D005244 3.1e-31 139.4 212 41.0
MD00G1188600 Malus domestica HOM05D004603 ORTHO05D005244 6.8e-31 138.3 216 39.8
Dinv32050 Davidia involucrata HOM05D004603 ORTHO05D005244 8.9e-31 137.9 172 47.7
Glyma.12G039500 Glycine max HOM05D004603 ORTHO05D005244 1.2e-30 137.5 210 39.5
Psat7g182960 Pisum sativum HOM05D004603 ORTHO05D005244 1.5e-30 137.1 215 38.6
Cfa010862 Carpinus fangiana HOM05D004603 ORTHO05D005244 2.0e-30 136.7 210 42.4
Haze_03089 Corylus avellana HOM05D004603 ORTHO05D005244 5.8e-30 135.2 210 41.4
Hma1.2p1_0902F.1_g234830 Hydrangea macrophylla HOM05D004603 ORTHO05D005244 5.8e-30 135.2 216 40.3
CANSAT35G1099 Cannabis sativa HOM05D004603 ORTHO05D005244 9.8e-30 134.4 211 39.8
Ca_20912_v3 Cicer arietinum L. HOM05D004603 ORTHO05D005244 1.7e-29 133.7 212 37.7
TWI63G1183 Tripterygium wilfordii HOM05D004603 ORTHO05D005244 2.9e-29 132.9 204 42.2
VMungo1127G0155 Vigna mungo HOM05D004603 ORTHO05D005244 2.9e-29 132.9 217 39.2
MELO3C012448.2 Cucumis melo HOM05D004603 ORTHO05D005244 8.3e-29 131.3 215 40.0
VMungo1127G1982 Vigna mungo HOM05D004603 ORTHO05D005244 8.3e-29 131.3 217 39.6
FAN10G0154 Fragaria x ananassa HOM05D004603 ORTHO05D005244 1.1e-28 131.0 191 41.9
AT1G34550 Arabidopsis thaliana HOM05D000499 ORTHO05D002825 1.4e-28 130.6 95 75.8
Glyma.11G113600 Glycine max HOM05D004603 ORTHO05D005244 2.4e-28 129.8 210 39.5
SalBow1G4372 Salvia bowleyana HOM05D004603 ORTHO05D005244 2.4e-28 129.8 211 39.3
Sed0010230 Sechium edule HOM05D004603 ORTHO05D005244 2.4e-28 129.8 215 38.6
TPR.G30506 Trifolium pratense HOM05D004603 ORTHO05D005244 3.2e-28 129.4 218 38.1
SalBow5G1211 Salvia bowleyana HOM05D004603 ORTHO05D005244 7.0e-28 128.3 211 39.3
FAN01G0231 Fragaria x ananassa HOM05D000001 ORTHO05D009083 9.2e-28 127.9 183 42.6
Medtr4g071040 Medicago truncatula HOM05D004603 ORTHO05D005244 9.2e-28 127.9 208 39.4
MSTRG.20534 Avicennia marina HOM05D004603 ORTHO05D005244 1.2e-27 127.5 165 43.6
CsaV3_5G036510 Cucumis sativus L. HOM05D004603 ORTHO05D005244 1.2e-27 127.5 215 40.0
Lj3g0020788 Lotus japonicus HOM05D004603 ORTHO05D005244 1.2e-27 127.5 211 37.9
Prupe.2G029400 Prunus persica HOM05D004603 ORTHO05D005244 2.7e-27 126.3 217 41.5
SalBow5G1267 Salvia bowleyana HOM05D004603 ORTHO05D005244 2.7e-27 126.3 211 39.3
CiPaw.13G010800 Carya illinoinensis HOM05D004603 ORTHO05D005244 4.6e-27 125.6 162 45.7
EL10Ac2g02852 Beta vulgaris HOM05D004603 ORTHO05D005244 1.0e-26 124.4 188 39.4
BraA09t38742Z Brassica rapa HOM05D000499 ORTHO05D002825 1.0e-26 124.4 96 70.8
Migut.B01205 Erythranthe guttata HOM05D004603 ORTHO05D005244 1.3e-26 124.0 209 40.7
AUR62026828 Chenopodium quinoa HOM05D004603 ORTHO05D005244 1.7e-26 123.6 163 42.9
ECA248G3322 Erigeron canadensis HOM05D004603 ORTHO05D005244 3.0e-26 122.9 175 43.4
TAR053G0004 Trochodendron aralioides HOM05D004603 ORTHO05D005244 3.0e-26 122.9 220 39.1
CSS0012283 Camellia sinensis var. sinensis HOM05D004603 ORTHO05D005244 3.9e-26 122.5 138 50.7
MBI13_g05166_MAGBIO Magnolia biondii HOM05D004603 ORTHO05D005244 5.1e-26 122.1 118 53.4
MD07G1031900 Malus domestica HOM05D004603 ORTHO05D005244 5.1e-26 122.1 146 47.9
CSS0050281 Camellia sinensis var. sinensis HOM05D004603 ORTHO05D005244 6.6e-26 121.7 138 50.7
AUR62037226 Chenopodium quinoa HOM05D004603 ORTHO05D005244 6.6e-26 121.7 163 42.3
Peaxi162Scf00047g02136 Petunia axillaris HOM05D004603 ORTHO05D005244 6.6e-26 121.7 166 41.0
TAR369G0595 Trochodendron aralioides HOM05D004603 ORTHO05D005244 6.6e-26 121.7 168 42.3
Hund13330 Selenicereus undatus HOM05D004603 ORTHO05D005244 1.5e-25 120.6 161 42.9
Nitab4.5_0000316g0040 Nicotiana tabacum HOM05D004603 ORTHO05D005244 3.3e-25 119.4 189 38.6
Aqoxy2G00300 Aquilegia oxysepala HOM05D004603 ORTHO05D005244 4.3e-25 119.0 169 40.2
Atru.chr11.786 Acer truncatum HOM05D004603 ORTHO05D005244 7.3e-25 118.2 139 50.4
DCAR_031824 Daucus carota HOM05D004603 ORTHO05D005244 7.3e-25 118.2 197 37.1
Lj9A646T46 Lonicera japonica HOM05D004603 ORTHO05D005244 7.3e-25 118.2 168 41.1
Nitab4.5_0013777g0030 Nicotiana tabacum HOM05D004603 ORTHO05D005244 7.3e-25 118.2 210 34.8
Peaxi162Scf00309g00324 Petunia axillaris HOM05D004603 ORTHO05D005244 1.6e-24 117.1 182 37.4
Lj1A1244T16 Lonicera japonica HOM05D004603 ORTHO05D005244 2.1e-24 116.7 168 41.1
BolC6t36282H Brassica oleracea HOM05D000499 ORTHO05D002825 2.8e-24 116.3 95 70.5
CDE08G1561 Ceratophyllum demersum HOM05D004603 ORTHO05D005244 2.8e-24 116.3 202 38.6
DCAR_024211 Daucus carota HOM05D004603 ORTHO05D005244 2.8e-24 116.3 209 37.3
SGA_v2.0_scaffold119G32802 Striga asiatica HOM05D004603 ORTHO05D005244 2.8e-24 116.3 166 39.2
DCAR_009134 Daucus carota HOM05D004603 ORTHO05D005244 4.7e-24 115.5 209 37.3
HanXRQChr15g0493861 Helianthus annuus HOM05D004603 ORTHO05D005244 1.1e-23 114.4 174 41.4
unitig_26.g8818 Utricularia gibba HOM05D004414 ORTHO05D005244 1.4e-23 114.0 212 34.4
CAN.G745.15 Capsicum annuum HOM05D004603 ORTHO05D005244 1.8e-23 113.6 218 34.9
HPP92_010478 Vanilla planifolia HOM05D004603 ORTHO05D005244 6.8e-23 111.7 179 36.3
Ah.12g065100 Amaranthus hybridus HOM05D004603 ORTHO05D005244 8.9e-23 111.3 168 38.7
Solyc01g068450.4 Solanum lycopersicum HOM05D004603 ORTHO05D005244 1.2e-22 110.9 216 35.2
Lj2g0001718 Lotus japonicus HOM05D004603 ORTHO05D005244 2.6e-22 109.8 137 44.5
Sopen01g030410 Solanum pennellii HOM05D004603 ORTHO05D005244 3.4e-22 109.4 166 40.4
PSO017G3894 Papaver somniferum HOM05D004603 ORTHO05D005244 5.8e-22 108.6 157 42.0
SEGI_29054 Sequoiadendron giganteum HOM05D004603 ORTHO05D005244 9.9e-22 107.8 178 36.0
Cc02_g29120 Coffea canephora HOM05D004603 ORTHO05D005244 1.3e-21 107.5 216 33.8
HanXRQChr13g0394011 Helianthus annuus HOM05D004603 ORTHO05D005244 1.7e-21 107.1 136 44.1
Actinidia21527 Actinidia chinensis HOM05D004603 ORTHO05D005244 2.2e-21 106.7 197 38.6
Ciclev10017990m.g Citrus clementina HOM05D004603 ORTHO05D005244 8.3e-21 104.8 172 40.1
Sc10g0004260 Simmondsia chinensis HOM05D004603 ORTHO05D005244 1.9e-20 103.6 173 37.6
Oeu062071.1 Olea europaea HOM05D004603 ORTHO05D005244 2.4e-20 103.2 132 44.7
Lsat_1_v5_gn_1_97861 Lactuca sativa HOM05D004603 ORTHO05D005244 3.2e-20 102.8 84 58.3
SEGI_15222 Sequoiadendron giganteum HOM05D004603 ORTHO05D005244 3.2e-20 102.8 178 34.8
ClCG05G020790 Citrullus lanatus HOM05D004603 ORTHO05D005244 7.1e-20 101.7 299 29.4
PSO063G4454 Papaver somniferum HOM05D004603 ORTHO05D005244 9.2e-20 101.3 172 38.4
Gohir.A05G333100 Gossypium hirsutum HOM05D004603 ORTHO05D005244 1.2e-19 100.9 120 46.7
A01p20230 Brassica napus HOM05D017989 ORTHO05D021787 2.7e-19 99.8 94 60.6
Os10g0580500 Oryza sativa ssp. japonica HOM05D004603 ORTHO05D005244 2.7e-19 99.8 133 40.6
PGSC0003DMG400023243 Solanum tuberosum HOM05D004603 ORTHO05D005244 1.0e-18 97.8 149 38.9
PSO528G0152 Papaver somniferum HOM05D004603 ORTHO05D005244 1.7e-18 97.1 181 35.4
Os01g0950800 Oryza sativa ssp. japonica HOM05D004603 ORTHO05D005244 5.1e-18 95.5 195 36.4
Mapoly0122s0047 Marchantia polymorpha HOM05D004603 ORTHO05D005244 1.9e-17 93.6 146 36.3
PSO170G0256 Papaver somniferum HOM05D004603 ORTHO05D005244 1.6e-16 90.5 181 34.3
ATR0721G140 Amborella trichopoda HOM05D004603 ORTHO05D005244 3.6e-16 89.4 130 38.5
Zm00001eb140990 Zea mays HOM05D004603 ORTHO05D005244 3.1e-15 86.3 189 33.3
Pp3c5_22730 Physcomitrium patens HOM05D004603 ORTHO05D005244 6.8e-15 85.1 101 37.6
RcHm_v2.0_Chr7g0218601 Rosa chinensis HOM05D004603 ORTHO05D005244 1.7e-13 80.5 119 41.2
Zm00001eb363050 Zea mays HOM05D004603 ORTHO05D005244 2.2e-13 80.1 150 36.0
ATR0217G019 Amborella trichopoda HOM05D004603 ORTHO05D005244 1.2e-11 74.3 136 34.6
FvH4_5g29020 Fragaria vesca HOM05D004603 ORTHO05D005244 2.1e-11 73.6 103 36.9
CDE09G0498 Ceratophyllum demersum HOM05D002215 ORTHO05D002238 8.7e-10 68.2 71 46.5
FAN13G2986 Fragaria x ananassa HOM05D004603 ORTHO05D005244 8.7e-10 68.2 130 33.8
FAN18G3634 Fragaria x ananassa HOM05D004603 ORTHO05D005244 8.7e-10 68.2 79 41.8
ECA248G0603 Erigeron canadensis HOM05D004603 ORTHO05D005244 1.1e-09 67.8 73 45.2
CAN.G1571.2 Capsicum annuum HOM05D004603 ORTHO05D005244 1.5e-09 67.4 139 35.3
AagrBONN_evm.TU.Sc2ySwM_117.3931 Anthoceros agrestis HOM05D004603 ORTHO05D005244 7.3e-09 65.1 158 27.2
SHI03956 Sapria himalayana HOM05D005973 ORTHO05D007285 1.6e-08 63.9 71 46.5
A09p32070 Brassica napus HOM05D000499 ORTHO05D002825 6.2e-08 62.0 57 61.4
FAN08G2679 Fragaria x ananassa HOM05D004603 ORTHO05D005244 1.1e-07 61.2 232 28.0
Cre09.g388245 Chlamydomonas reinhardtii HOM05D004603 ORTHO05D005244 6.9e-07 58.5 81 34.6
CBR_g23146 Chara braunii HOM05D004542 ORTHO05D005380 1.2e-06 57.8 77 39.0
ECA248G0821 Erigeron canadensis HOM05D004603 ORTHO05D005244 1.2e-06 57.8 103 40.8
AUR62017456 Chenopodium quinoa HOM05D004603 ORTHO05D005244 1.5e-06 57.4 40 65.0
AagrBONN_evm.TU.Sc2ySwM_368.759 Anthoceros agrestis HOM05D004603 ORTHO05D005244 4.4e-06 55.8 105 33.3
SMO170G0061 Selaginella moellendorffii HOM05D004603 ORTHO05D005244 7.6e-06 55.1 118 29.7


User provided reference genes

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