Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G48760 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 5.1e-103 377.9 205 100.0
AL6G40520 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 3.1e-100 368.6 205 98.0
AT1G54110 Arabidopsis thaliana HOM05D003593 ORTHO05D004064 1.4e-81 306.6 199 85.4
Sp1g35080 Schrenkiella parvula HOM05D003593 ORTHO05D004064 3.0e-79 298.9 199 83.4
AL5G36800 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 1.1e-78 297.0 202 84.2
AT3G55600 Arabidopsis thaliana HOM05D003593 ORTHO05D004064 2.5e-78 295.8 202 83.7
Carub.0003s3082 Capsella rubella HOM05D003593 ORTHO05D004064 5.6e-78 294.7 202 83.7
CARHR165650 Cardamine hirsuta HOM05D003593 ORTHO05D004064 1.4e-76 290.0 202 81.7
Thhalv10010672m.g Eutrema salsugineum HOM05D003593 ORTHO05D004064 3.4e-75 285.4 202 81.2
Sp5g06880 Schrenkiella parvula HOM05D003593 ORTHO05D004064 7.6e-75 284.3 202 82.2
BcaB01g00076 Brassica carinata HOM05D003593 ORTHO05D004064 7.1e-73 277.7 201 79.1
A09p48590 Brassica napus HOM05D003593 ORTHO05D004064 9.3e-73 277.3 200 79.5
C08p30920 Brassica napus HOM05D003593 ORTHO05D004064 9.3e-73 277.3 204 78.9
BraA09t40311Z Brassica rapa HOM05D003593 ORTHO05D004064 9.3e-73 277.3 200 79.5
BcaC07g39887 Brassica carinata HOM05D002600 ORTHO05D003013 6.0e-72 274.6 202 78.7
BolC8t50717H Brassica oleracea HOM05D003593 ORTHO05D004064 6.0e-72 274.6 199 79.9
C08p30910 Brassica napus HOM05D003593 ORTHO05D004064 7.9e-72 274.2 204 78.4
Aa31LG5G19840 Aethionema arabicum HOM05D003593 ORTHO05D004064 2.8e-69 265.8 202 75.2
THA.LOC104810051 Tarenaya hassleriana HOM05D003593 ORTHO05D004064 8.1e-69 264.2 202 75.7
Thhalv10011761m.g Eutrema salsugineum HOM05D003593 ORTHO05D004064 1.8e-68 263.1 184 81.0
THA.LOC104810053 Tarenaya hassleriana HOM05D003593 ORTHO05D004064 2.6e-67 259.2 202 75.2
AL1G62820 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 4.5e-59 231.9 140 90.0
Atru.chr1.1670 Acer truncatum HOM05D003593 ORTHO05D004064 9.7e-54 214.2 203 61.1
Ciclev10021956m.g Citrus clementina HOM05D003593 ORTHO05D004064 2.8e-53 212.6 203 59.1
Ciclev10032601m.g Citrus clementina HOM05D003593 ORTHO05D004064 6.3e-53 211.5 203 58.6
TWI39G0804 Tripterygium wilfordii HOM05D003593 ORTHO05D004064 1.4e-52 210.3 205 61.5
Cpa.g.sc103.74 Carica papaya HOM05D003593 ORTHO05D004064 2.4e-52 209.5 207 58.9
Thecc.09G252700 Theobroma cacao HOM05D003593 ORTHO05D004064 5.3e-52 208.4 203 61.6
CANSAT01G0027 Cannabis sativa HOM05D003593 ORTHO05D004064 2.0e-51 206.5 202 59.9
Phvul.003G138826 Phaseolus vulgaris HOM05D003593 ORTHO05D004064 5.9e-51 204.9 203 57.6
Phvul.003G139226 Phaseolus vulgaris HOM05D003593 ORTHO05D004064 5.9e-51 204.9 203 57.6
Phvul.003G138700 Phaseolus vulgaris HOM05D003593 ORTHO05D004064 1.3e-50 203.8 203 57.6
FAN20G0230 Fragaria x ananassa HOM05D003593 ORTHO05D004064 1.7e-50 203.4 203 59.1
Gohir.D10G156600 Gossypium hirsutum HOM05D003593 ORTHO05D004064 1.7e-50 203.4 203 59.1
Gorai.011G174800 Gossypium raimondii HOM05D003593 ORTHO05D004064 1.7e-50 203.4 203 59.1
FvH4_2g10880 Fragaria vesca HOM05D003593 ORTHO05D004064 2.9e-50 202.6 203 59.1
RcHm_v2.0_Chr6g0268981 Rosa chinensis HOM05D003593 ORTHO05D004064 2.9e-50 202.6 203 59.1
GSVIVG01029263001 Vitis vinifera HOM05D003593 ORTHO05D004064 2.9e-50 202.6 203 57.6
Cfa013477 Carpinus fangiana HOM05D003593 ORTHO05D004064 5.0e-50 201.8 207 57.5
Duzib068G0242 Durio zibethinus HOM05D003593 ORTHO05D004064 6.5e-50 201.4 203 59.6
RcHm_v2.0_Chr5g0056791 Rosa chinensis HOM05D003593 ORTHO05D004064 8.5e-50 201.1 203 58.6
arahy.Tifrunner.gnm1.ann1.PB4QPE Arachis hypogaea HOM05D003593 ORTHO05D004064 1.4e-49 200.3 204 58.8
MD13G1238800 Malus domestica HOM05D003593 ORTHO05D004064 1.4e-49 200.3 203 59.1
QL03p003697 Quercus lobata HOM05D003593 ORTHO05D004064 1.4e-49 200.3 204 59.3
arahy.Tifrunner.gnm1.ann1.HDC0J8 Arachis hypogaea HOM05D003593 ORTHO05D004064 1.9e-49 199.9 204 58.8
Gohir.A10G111600 Gossypium hirsutum HOM05D003593 ORTHO05D004064 1.9e-49 199.9 203 58.1
COL.COLO4_13717 Corchorus olitorius HOM05D003593 ORTHO05D004064 2.5e-49 199.5 203 57.6
FAN15G1423 Fragaria x ananassa HOM05D003593 ORTHO05D004064 2.5e-49 199.5 203 58.6
Dinv34117 Davidia involucrata HOM05D003593 ORTHO05D004064 3.2e-49 199.1 202 58.9
CiPaw.07G199700 Carya illinoinensis HOM05D003593 ORTHO05D004064 1.2e-48 197.2 205 59.5
Potri.018G133700 Populus trichocarpa HOM05D003593 ORTHO05D004064 1.6e-48 196.8 203 57.6
Prupe.1G071200 Prunus persica HOM05D003593 ORTHO05D004064 1.6e-48 196.8 202 56.9
Glyma.17G056700 Glycine max HOM05D003593 ORTHO05D004064 2.7e-48 196.1 203 55.7
VMungo1215G1259 Vigna mungo HOM05D003593 ORTHO05D004064 4.6e-48 195.3 203 56.2
Glyma.13G102300 Glycine max HOM05D003593 ORTHO05D004064 1.0e-47 194.1 203 55.7
PGR142G0083 Punica granatum HOM05D003593 ORTHO05D004064 1.0e-47 194.1 203 56.2
Glyma.14G032100 Glycine max HOM05D003593 ORTHO05D004064 1.8e-47 193.4 203 56.2
Nitab4.5_0010661g0020 Nicotiana tabacum HOM05D003593 ORTHO05D004064 2.3e-47 193.0 201 58.2
Eucgr.F03860 Eucalyptus grandis HOM05D003593 ORTHO05D004064 3.0e-47 192.6 205 58.0
FAN24G3005 Fragaria x ananassa HOM05D003593 ORTHO05D004064 3.0e-47 192.6 202 56.4
Prupe.2G148000 Prunus persica HOM05D003593 ORTHO05D004064 3.9e-47 192.2 203 57.1
CSS0033341 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 8.8e-47 191.0 199 58.8
CSS0039493 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 8.8e-47 191.0 199 58.8
CiPaw.08G030900 Carya illinoinensis HOM05D003593 ORTHO05D004064 8.8e-47 191.0 204 58.3
Lj4g0003900 Lotus japonicus HOM05D003593 ORTHO05D004064 1.1e-46 190.7 206 58.3
Ca_21268_v3 Cicer arietinum L. HOM05D003593 ORTHO05D004064 1.5e-46 190.3 205 56.6
Nn8g40907 Nelumbo nucifera HOM05D003593 ORTHO05D004064 1.5e-46 190.3 202 56.4
Manes.03G101800 Manihot esculenta HOM05D003593 ORTHO05D004064 2.0e-46 189.9 203 57.6
Sabra18G0113300 Salix brachista HOM05D003593 ORTHO05D004064 3.3e-46 189.1 203 57.1
QL02p059634 Quercus lobata HOM05D003593 ORTHO05D004064 5.7e-46 188.3 232 53.0
Peaxi162Scf00195g00123 Petunia axillaris HOM05D003593 ORTHO05D004064 9.7e-46 187.6 203 58.1
CAN.G1497.5 Capsicum annuum HOM05D003593 ORTHO05D004064 1.3e-45 187.2 203 58.1
Lj1C63T22 Lonicera japonica HOM05D003593 ORTHO05D004064 1.3e-45 187.2 203 55.2
Nitab4.5_0000630g0070 Nicotiana tabacum HOM05D003593 ORTHO05D004064 1.3e-45 187.2 203 56.2
Migut.D00405 Erythranthe guttata HOM05D003593 ORTHO05D004064 2.2e-45 186.4 202 54.5
GSVIVG01033604001 Vitis vinifera HOM05D003593 ORTHO05D004064 3.7e-45 185.7 203 55.2
Actinidia21188 Actinidia chinensis HOM05D003593 ORTHO05D004064 4.8e-45 185.3 200 56.0
CAN.G675.9 Capsicum annuum HOM05D003593 ORTHO05D004064 4.8e-45 185.3 203 57.1
Aqoxy5G00845 Aquilegia oxysepala HOM05D003593 ORTHO05D004064 1.4e-44 183.7 204 55.4
MSTRG.21503 Avicennia marina HOM05D003593 ORTHO05D004064 3.1e-44 182.6 202 53.5
MBI14_g31143_MAGBIO Magnolia biondii HOM05D003593 ORTHO05D004064 3.1e-44 182.6 201 56.7
CsaV3_3G012080 Cucumis sativus L. HOM05D003593 ORTHO05D004064 4.1e-44 182.2 204 54.4
Rhsim01G0049400 Rhododendron simsii HOM05D003593 ORTHO05D004064 4.1e-44 182.2 201 54.7
TPR.G5405 Trifolium pratense HOM05D003593 ORTHO05D004064 6.9e-44 181.4 204 55.4
Sopen02g018530 Solanum pennellii HOM05D003593 ORTHO05D004064 1.5e-43 180.3 203 54.7
ClCG06G013760 Citrullus lanatus HOM05D003593 ORTHO05D004064 2.6e-43 179.5 204 54.4
Medtr4g126960 Medicago truncatula HOM05D003593 ORTHO05D004064 3.4e-43 179.1 205 55.6
Rhsim01G0266500 Rhododendron simsii HOM05D003593 ORTHO05D004064 5.9e-43 178.3 201 54.7
GSVIVG01025934001 Vitis vinifera HOM05D003593 ORTHO05D004064 5.9e-43 178.3 203 54.2
Sc03g0009620 Simmondsia chinensis HOM05D003593 ORTHO05D004064 7.7e-43 177.9 211 54.5
MSTRG.18306 Avicennia marina HOM05D003593 ORTHO05D004064 1.0e-42 177.6 208 52.9
Medtr8g027710 Medicago truncatula HOM05D003593 ORTHO05D004064 1.0e-42 177.6 203 54.7
Solyc02g069380.3 Solanum lycopersicum HOM05D003593 ORTHO05D004064 1.0e-42 177.6 203 54.2
unitig_22.g5286 Utricularia gibba HOM05D003593 ORTHO05D004064 1.0e-42 177.6 201 55.2
SalBow4G0244 Salvia bowleyana HOM05D003593 ORTHO05D004064 1.3e-42 177.2 206 55.3
Zm00001eb252050 Zea mays HOM05D003593 ORTHO05D004064 5.0e-42 175.3 203 55.7
HanXRQChr04g0113781 Helianthus annuus HOM05D003593 ORTHO05D004064 6.5e-42 174.9 204 52.9
Hund02205 Selenicereus undatus HOM05D003593 ORTHO05D004064 6.5e-42 174.9 203 53.2
AUR62029320 Chenopodium quinoa HOM05D003593 ORTHO05D004064 1.4e-41 173.7 203 52.7
AUR62035376 Chenopodium quinoa HOM05D003593 ORTHO05D004064 1.4e-41 173.7 203 52.7
Lsat_1_v5_gn_8_91320 Lactuca sativa HOM05D003593 ORTHO05D004064 1.9e-41 173.3 198 55.6
Zm00001eb036800 Zea mays HOM05D003593 ORTHO05D004064 2.5e-41 172.9 198 54.5
ECA236G3417 Erigeron canadensis HOM05D003593 ORTHO05D004064 5.5e-41 171.8 204 53.4
QL03p003406 Quercus lobata HOM05D003593 ORTHO05D004064 5.5e-41 171.8 267 45.3
HanXRQChr10g0281101 Helianthus annuus HOM05D003593 ORTHO05D004064 7.2e-41 171.4 206 50.5
MBI16_g31002_MAGBIO Magnolia biondii HOM05D003593 ORTHO05D004064 1.2e-40 170.6 200 53.0
TPR.G16420 Trifolium pratense HOM05D003593 ORTHO05D004064 1.6e-40 170.2 204 53.4
Cc07_g18270 Coffea canephora HOM05D003593 ORTHO05D004064 2.1e-40 169.9 205 50.2
Lsat_1_v5_gn_9_9120 Lactuca sativa HOM05D003593 ORTHO05D004064 4.7e-40 168.7 215 47.9
Os08g0533700 Oryza sativa ssp. japonica HOM05D003593 ORTHO05D004064 4.7e-40 168.7 200 56.0
Peaxi162Scf00956g00310 Petunia axillaris HOM05D003593 ORTHO05D004064 7.9e-40 167.9 203 52.2
SGA_v2.0_scaffold10G05150 Striga asiatica HOM05D003593 ORTHO05D004064 8.8e-39 164.5 240 45.4
PSO782G1623 Papaver somniferum HOM05D003593 ORTHO05D004064 1.1e-38 164.1 202 51.5
EL10Ac5g11509 Beta vulgaris HOM05D003593 ORTHO05D004064 1.5e-38 163.7 203 49.8
Lalb_Chr12g0199721 Lupinus albus HOM05D003593 ORTHO05D004064 2.0e-38 163.3 203 49.3
PSO063G1703 Papaver somniferum HOM05D003593 ORTHO05D004064 2.0e-38 163.3 202 51.5
ATR0580G077 Amborella trichopoda HOM05D003593 ORTHO05D004064 7.4e-38 161.4 199 50.8
Sed0025908 Sechium edule HOM05D003593 ORTHO05D004064 7.4e-38 161.4 191 54.5
MD08G1104600 Malus domestica HOM05D003593 ORTHO05D004064 9.7e-38 161.0 198 54.5
Peaxi162Scf00074g00739 Petunia axillaris HOM05D003593 ORTHO05D004064 9.7e-38 161.0 197 53.8
Hma1.2p1_1219F.1_g267880 Hydrangea macrophylla HOM05D003593 ORTHO05D004064 3.7e-37 159.1 198 51.5
Hma1.2p1_0571F.1_g180780 Hydrangea macrophylla HOM05D003593 ORTHO05D004064 8.2e-37 157.9 203 51.2
Sopen02g013070 Solanum pennellii HOM05D003593 ORTHO05D004064 1.4e-36 157.1 186 51.1
CSS0014982 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 2.4e-36 156.4 177 55.9
Manes.16G049600 Manihot esculenta HOM05D003593 ORTHO05D004064 1.2e-35 154.1 201 50.7
Os09g0272500 Oryza sativa ssp. japonica HOM05D003593 ORTHO05D004064 1.2e-35 154.1 204 49.5
CSS0019003 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 2.2e-34 149.8 179 53.6
Manes.15G093801 Manihot esculenta HOM05D003593 ORTHO05D004064 2.2e-34 149.8 227 45.8
FAN09G1792 Fragaria x ananassa HOM05D003593 ORTHO05D004064 2.9e-34 149.4 203 48.8
FAN09G2125 Fragaria x ananassa HOM05D003593 ORTHO05D004064 2.9e-34 149.4 203 48.8
Ah.04g164950 Amaranthus hybridus HOM05D003593 ORTHO05D004064 6.5e-34 148.3 261 40.6
FvH4_6g47540 Fragaria vesca HOM05D003593 ORTHO05D004064 1.5e-33 147.1 203 48.3
PSO170G4544 Papaver somniferum HOM05D003593 ORTHO05D004064 3.2e-33 146.0 186 53.8
FAN02G4054 Fragaria x ananassa HOM05D003593 ORTHO05D004064 3.0e-31 139.4 189 47.1
Oeu035605.1 Olea europaea HOM05D003593 ORTHO05D004064 3.0e-31 139.4 187 47.6
AUR62029138 Chenopodium quinoa HOM05D003593 ORTHO05D004064 3.3e-30 136.0 163 52.1
FAN09G2587 Fragaria x ananassa HOM05D003593 ORTHO05D004064 7.5e-30 134.8 189 46.0
FAN05G2468 Fragaria x ananassa HOM05D003593 ORTHO05D004064 1.7e-29 133.7 189 46.0
Sed0017744 Sechium edule HOM05D003593 ORTHO05D004064 1.7e-29 133.7 165 52.1
Nitab4.5_0005797g0010 Nicotiana tabacum HOM05D003593 ORTHO05D004064 8.2e-29 131.3 203 46.3
AUR62015608 Chenopodium quinoa HOM05D003593 ORTHO05D004064 2.4e-28 129.8 171 46.2
SEGI_30783 Sequoiadendron giganteum HOM05D003593 ORTHO05D004064 5.3e-28 128.6 201 47.3
Atru.chr10.1467 Acer truncatum HOM05D003593 ORTHO05D004064 9.1e-28 127.9 113 68.1
DCAR_007335 Daucus carota HOM05D003593 ORTHO05D002993 9.1e-28 127.9 167 49.7
vmacro03823 Vaccinium macrocarpon HOM05D003593 ORTHO05D004064 1.0e-26 124.4 287 34.8
SEGI_34697 Sequoiadendron giganteum HOM05D003593 ORTHO05D004064 2.9e-26 122.9 113 61.1
Rhsim08G0153900 Rhododendron simsii HOM05D003593 ORTHO05D004064 3.8e-26 122.5 193 45.6
SMO288G0003 Selaginella moellendorffii HOM05D003593 ORTHO05D004064 1.6e-24 117.1 198 39.4
MD16G1244100 Malus domestica HOM05D003593 ORTHO05D004064 2.1e-24 116.7 112 60.7
C04p36780 Brassica napus HOM05D003593 ORTHO05D004064 8.8e-23 111.3 87 73.6
SMO352G0089 Selaginella moellendorffii HOM05D003593 ORTHO05D004064 8.8e-23 111.3 196 42.3
HPP92_006993 Vanilla planifolia HOM05D003593 ORTHO05D004064 2.6e-22 109.8 199 42.2
FAN14G2581 Fragaria x ananassa HOM05D003593 ORTHO05D004064 4.4e-22 109.0 144 47.9
Psat2g189400 Pisum sativum HOM05D003593 ORTHO05D004064 5.7e-22 108.6 146 48.6
MBI16_g41745_MAGBIO Magnolia biondii HOM05D003593 ORTHO05D004064 9.8e-22 107.8 83 73.5
MBI16_g09339_MAGBIO Magnolia biondii HOM05D003593 ORTHO05D004064 2.2e-21 106.7 93 65.6
MELO3C006423.2 Cucumis melo HOM05D003593 ORTHO05D004064 3.7e-21 105.9 146 45.9
CSS0006561 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 8.3e-21 104.8 190 41.1
Psat1g089640 Pisum sativum HOM05D003593 ORTHO05D004064 1.4e-20 104.0 147 48.3
CDE06G1796 Ceratophyllum demersum HOM05D003593 ORTHO05D004064 1.8e-20 103.6 158 44.3
Oeu048106.1 Olea europaea HOM05D003593 ORTHO05D004064 7.0e-20 101.7 82 67.1
CSS0041369 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 9.1e-20 101.3 143 43.4
Thecc.10G141700 Theobroma cacao HOM05D003593 ORTHO05D004064 9.1e-20 101.3 134 46.3
BcaC07g39889 Brassica carinata HOM05D003593 ORTHO05D004064 1.0e-18 97.8 120 54.2
Aqoxy5G03192 Aquilegia oxysepala HOM05D003593 ORTHO05D004064 3.8e-18 95.9 196 37.8
Haze_22054 Corylus avellana HOM05D003593 ORTHO05D004064 8.6e-18 94.7 60 83.3
CDE02G1962 Ceratophyllum demersum HOM05D003593 ORTHO05D004064 1.1e-17 94.4 141 45.4
CSS0030751 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 2.5e-17 93.2 175 40.6
Pp3c17_5110 Physcomitrium patens HOM05D003593 ORTHO05D004064 3.6e-16 89.4 226 34.5
CBR_g26495 Chara braunii HOM05D003593 ORTHO05D004064 2.6e-14 83.2 215 32.6
Actinidia14176 Actinidia chinensis HOM05D003593 ORTHO05D004064 9.8e-14 81.3 122 47.5
Solyc02g062120.3 Solanum lycopersicum HOM05D003593 ORTHO05D004064 1.3e-13 80.9 198 33.8
PSO170G1127 Papaver somniferum HOM05D003593 ORTHO05D004064 5.4e-12 75.5 132 43.2
arahy.Tifrunner.gnm1.ann1.0CTM64 Arachis hypogaea HOM05D003593 ORTHO05D004064 2.7e-11 73.2 148 39.9
Glyma.02G282202 Glycine max HOM05D003593 ORTHO05D004064 3.5e-11 72.8 77 58.4
Mapoly0001s0213 Marchantia polymorpha HOM05D003593 ORTHO05D004064 2.3e-10 70.1 196 28.1
BolC8t50716H Brassica oleracea HOM05D003593 ORTHO05D004064 3.3e-09 66.2 42 76.2
Lsat_1_v5_gn_7_57621 Lactuca sativa HOM05D001776 ORTHO05D001771 9.5e-09 64.7 51 68.6
Haze_22055 Corylus avellana HOM05D003593 ORTHO05D004064 4.7e-08 62.4 150 37.3
Thhalv10002036m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 1.0e-07 61.2 37 81.1
AagrBONN_evm.TU.Sc2ySwM_368.144 Anthoceros agrestis HOM05D003593 ORTHO05D004064 2.0e-06 57.0 151 32.5


User provided reference genes

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