Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G48440 Arabidopsis lyrata HOM05D005519 ORTHO05D006423 1.7e-78 296.2 175 100.0
AT1G34000 Arabidopsis thaliana HOM05D005519 ORTHO05D006423 5.0e-75 284.6 175 95.4
Carub.0001s3208 Capsella rubella HOM05D005519 ORTHO05D006423 5.7e-71 271.2 177 93.8
BolC6t36346H Brassica oleracea HOM05D005519 ORTHO05D006423 1.0e-64 250.4 176 84.7
BcaC08g43825 Brassica carinata HOM05D005519 ORTHO05D006423 2.3e-64 249.2 176 84.1
BcaB04g17909 Brassica carinata HOM05D005519 ORTHO05D006423 6.7e-64 247.7 179 80.4
Thhalv10008704m.g Eutrema salsugineum HOM05D005519 ORTHO05D006423 8.8e-64 247.3 178 88.2
BcaB07g33022 Brassica carinata HOM05D005519 ORTHO05D006423 1.1e-63 246.9 177 81.4
BraA09t38789Z Brassica rapa HOM05D005519 ORTHO05D006423 4.4e-63 245.0 176 83.5
A09p32470 Brassica napus HOM05D005519 ORTHO05D006423 1.4e-61 240.0 176 81.8
Sp1g29260 Schrenkiella parvula HOM05D005519 ORTHO05D006423 9.1e-61 237.3 213 75.1
A08p08390 Brassica napus HOM05D005519 ORTHO05D006423 1.2e-60 236.9 177 78.0
BraA08t32855Z Brassica rapa HOM05D005519 ORTHO05D006423 1.2e-60 236.9 177 78.0
C06p12090 Brassica napus HOM05D005519 ORTHO05D006423 7.7e-60 234.2 176 81.2
BolC8t47881H Brassica oleracea HOM05D005519 ORTHO05D006423 1.3e-59 233.4 178 75.8
Aa31LG6G8220 Aethionema arabicum HOM05D005519 ORTHO05D006423 5.0e-59 231.5 177 79.7
CARHR033380 Cardamine hirsuta HOM05D005519 ORTHO05D006423 9.4e-58 227.3 180 79.4
THA.LOC104825113 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 7.5e-55 217.6 184 72.3
THA.LOC104806763 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 1.8e-53 213.0 183 74.9
TWI32G0061 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 1.5e-47 193.4 180 67.2
Glyma.20G169500 Glycine max HOM05D005519 ORTHO05D006423 2.6e-47 192.6 176 65.3
Glyma.10G222100 Glycine max HOM05D005519 ORTHO05D006423 3.4e-47 192.2 176 65.9
Glyma.02G079400 Glycine max HOM05D005519 ORTHO05D006423 1.7e-46 189.9 184 61.4
Hma1.2p1_0358F.1_g134710 Hydrangea macrophylla HOM05D005519 ORTHO05D006423 4.9e-46 188.3 184 67.4
Potri.005G196100 Populus trichocarpa HOM05D005519 ORTHO05D006423 4.9e-46 188.3 190 66.8
Peaxi162Scf00160g01746 Petunia axillaris HOM05D005519 ORTHO05D006423 1.1e-45 187.2 178 69.1
Gohir.A05G246000 Gossypium hirsutum HOM05D005519 ORTHO05D006423 2.4e-45 186.0 187 63.6
Phvul.004G091300 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 2.4e-45 186.0 186 65.6
CiPaw.15G012900 Carya illinoinensis HOM05D005519 ORTHO05D006423 5.4e-45 184.9 182 67.0
Dinv25895 Davidia involucrata HOM05D005519 ORTHO05D006423 5.4e-45 184.9 181 71.3
Manes.02G182800 Manihot esculenta HOM05D005519 ORTHO05D006423 5.4e-45 184.9 189 69.3
Sabra05G0149500 Salix brachista HOM05D005519 ORTHO05D006423 7.0e-45 184.5 190 68.9
VMungo0720G0436 Vigna mungo HOM05D005519 ORTHO05D006423 7.0e-45 184.5 176 66.5
Glyma.16G163800 Glycine max HOM05D005519 ORTHO05D006423 1.2e-44 183.7 188 61.7
Cfa018287 Carpinus fangiana HOM05D005519 ORTHO05D006423 1.6e-44 183.3 155 72.3
PGSC0003DMG400025068 Solanum tuberosum HOM05D005519 ORTHO05D006423 1.6e-44 183.3 182 70.3
Psat6g190880 Pisum sativum HOM05D005519 ORTHO05D006423 2.0e-44 183.0 179 62.6
VMungo0464G1678 Vigna mungo HOM05D005519 ORTHO05D006423 2.7e-44 182.6 188 68.6
Phvul.007G083000 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 4.5e-44 181.8 181 65.2
PGR042G3808 Punica granatum HOM05D005519 ORTHO05D006423 4.5e-44 181.8 151 74.8
TPR.G17016 Trifolium pratense HOM05D005519 ORTHO05D006423 5.9e-44 181.4 180 66.1
Lj5g0019555 Lotus japonicus HOM05D005519 ORTHO05D006423 7.7e-44 181.0 190 65.8
Lsat_1_v5_gn_9_42101 Lactuca sativa HOM05D005519 ORTHO05D006423 1.7e-43 179.9 177 67.8
Lj7A382T71 Lonicera japonica HOM05D005519 ORTHO05D006423 1.7e-43 179.9 177 71.8
Ca_10667_v3 Cicer arietinum L. HOM05D005519 ORTHO05D006423 3.8e-43 178.7 181 64.6
vmacro01488 Vaccinium macrocarpon HOM05D005519 ORTHO05D006423 5.0e-43 178.3 185 58.4
Potri.002G065000 Populus trichocarpa HOM05D005519 ORTHO05D006423 6.6e-43 177.9 190 67.4
Cpa.g.sc49.79 Carica papaya HOM05D005519 ORTHO05D006423 8.6e-43 177.6 186 68.8
Prupe.8G039900 Prunus persica HOM05D005519 ORTHO05D006423 1.1e-42 177.2 197 62.4
Sopen04g027910 Solanum pennellii HOM05D005519 ORTHO05D006423 1.1e-42 177.2 182 67.0
Manes.18G094400 Manihot esculenta HOM05D005519 ORTHO05D006423 1.5e-42 176.8 190 65.8
Solyc04g071930.4 Solanum lycopersicum HOM05D005519 ORTHO05D006423 1.5e-42 176.8 179 65.9
Sabra02G0051900 Salix brachista HOM05D005519 ORTHO05D006423 1.9e-42 176.4 190 58.9
CAN.G495.8 Capsicum annuum HOM05D005519 ORTHO05D006423 2.5e-42 176.0 178 67.4
TAR381G0167 Trochodendron aralioides HOM05D005519 ORTHO05D006423 2.5e-42 176.0 181 69.1
Lj4A703G50 Lonicera japonica HOM05D005519 ORTHO05D006423 3.3e-42 175.6 146 76.7
Rhsim11G0087200 Rhododendron simsii HOM05D005519 ORTHO05D006423 3.3e-42 175.6 155 67.1
TWI34G0476 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 3.3e-42 175.6 192 63.0
CiPaw.16G008800 Carya illinoinensis HOM05D005519 ORTHO05D006423 4.2e-42 175.3 197 61.4
Lsat_1_v5_gn_6_101660 Lactuca sativa HOM05D005519 ORTHO05D006423 4.2e-42 175.3 181 63.5
Gohir.D05G247500 Gossypium hirsutum HOM05D005519 ORTHO05D006423 5.6e-42 174.9 193 59.6
Nitab4.5_0002812g0030 Nicotiana tabacum HOM05D005519 ORTHO05D006423 7.2e-42 174.5 179 67.0
Lalb_Chr03g0035541 Lupinus albus HOM05D005519 ORTHO05D006423 9.5e-42 174.1 185 59.5
MD05G1032800 Malus domestica HOM05D005519 ORTHO05D006423 9.5e-42 174.1 192 58.9
Gorai.009G258300 Gossypium raimondii HOM05D005519 ORTHO05D006423 1.6e-41 173.3 193 59.1
Medtr1g098280 Medicago truncatula HOM05D005519 ORTHO05D006423 1.6e-41 173.3 179 63.1
DCAR_001160 Daucus carota HOM05D005519 ORTHO05D006423 3.6e-41 172.2 147 70.1
Nitab4.5_0001103g0040 Nicotiana tabacum HOM05D005519 ORTHO05D006423 3.6e-41 172.2 180 65.0
Nitab4.5_0000872g0010 Nicotiana tabacum HOM05D005519 ORTHO05D006423 4.7e-41 171.8 178 65.7
Peaxi162Scf00360g00028 Petunia axillaris HOM05D005519 ORTHO05D006423 4.7e-41 171.8 178 65.7
PGSC0003DMG400018793 Solanum tuberosum HOM05D005519 ORTHO05D006423 4.7e-41 171.8 143 67.1
CSS0002205 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 8.0e-41 171.0 147 72.8
ClCG08G008840 Citrullus lanatus HOM05D005519 ORTHO05D006423 1.0e-40 170.6 148 73.0
Thecc.08G158600 Theobroma cacao HOM05D005519 ORTHO05D006423 1.0e-40 170.6 184 65.8
CANSAT25G1666 Cannabis sativa HOM05D005519 ORTHO05D006423 1.4e-40 170.2 135 68.1
Nitab4.5_0000099g0170 Nicotiana tabacum HOM05D005519 ORTHO05D006423 1.8e-40 169.9 178 70.8
Atru.chr13.2018 Acer truncatum HOM05D005519 ORTHO05D006423 2.3e-40 169.5 183 62.8
MSTRG.25301 Avicennia marina HOM05D005519 ORTHO05D006423 2.3e-40 169.5 184 62.0
CAN.G26.8 Capsicum annuum HOM05D005519 ORTHO05D006423 2.3e-40 169.5 145 73.8
FvH4_2g13070 Fragaria vesca HOM05D005519 ORTHO05D006423 3.0e-40 169.1 186 67.2
RcHm_v2.0_Chr6g0274331 Rosa chinensis HOM05D005519 ORTHO05D006423 3.0e-40 169.1 186 66.7
Gohir.D02G068600 Gossypium hirsutum HOM05D005519 ORTHO05D006423 5.2e-40 168.3 175 66.3
QL02p037831 Quercus lobata HOM05D005519 ORTHO05D006423 5.2e-40 168.3 190 61.6
Sed0015682 Sechium edule HOM05D005519 ORTHO05D006423 5.2e-40 168.3 149 66.4
Solyc12g056620.2 Solanum lycopersicum HOM05D005519 ORTHO05D006423 6.8e-40 167.9 143 65.0
Duzib116G0927 Durio zibethinus HOM05D005519 ORTHO05D006423 8.9e-40 167.5 186 55.9
Haze_17800 Corylus avellana HOM05D005519 ORTHO05D006423 1.2e-39 167.2 191 67.5
CsaV3_6G005050 Cucumis sativus L. HOM05D005519 ORTHO05D006423 1.2e-39 167.2 145 72.4
Sopen12g029280 Solanum pennellii HOM05D005519 ORTHO05D006423 1.2e-39 167.2 143 64.3
Cc10_g15180 Coffea canephora HOM05D005519 ORTHO05D006423 1.5e-39 166.8 190 65.3
Duzib093G1843 Durio zibethinus HOM05D005519 ORTHO05D006423 1.5e-39 166.8 185 57.8
Lalb_Chr19g0130091 Lupinus albus HOM05D005519 ORTHO05D006423 2.0e-39 166.4 182 58.2
PSO541G5828 Papaver somniferum HOM05D005519 ORTHO05D006423 2.0e-39 166.4 190 57.4
arahy.Tifrunner.gnm1.ann1.8F5AL7 Arachis hypogaea HOM05D005519 ORTHO05D006423 2.6e-39 166.0 194 61.3
unitig_26.g9895 Utricularia gibba HOM05D005519 ORTHO05D006423 3.4e-39 165.6 147 70.7
arahy.Tifrunner.gnm1.ann1.SKG6R6 Arachis hypogaea HOM05D005519 ORTHO05D006423 4.4e-39 165.2 194 60.8
MD10G1033800 Malus domestica HOM05D005519 ORTHO05D006423 4.4e-39 165.2 192 63.5
Lj2g0026694 Lotus japonicus HOM05D005519 ORTHO05D006423 5.7e-39 164.9 175 63.4
CDE04G2354 Ceratophyllum demersum HOM05D005519 ORTHO05D006423 7.5e-39 164.5 181 58.6
QL02p038173 Quercus lobata HOM05D005519 ORTHO05D006423 9.8e-39 164.1 153 68.0
Ah.05g168160 Amaranthus hybridus HOM05D005519 ORTHO05D006423 2.2e-38 162.9 183 60.1
SGA_v2.0_scaffold108G30869 Striga asiatica HOM05D005519 ORTHO05D006423 2.2e-38 162.9 135 73.3
Migut.N03201 Erythranthe guttata HOM05D005519 ORTHO05D006423 2.9e-38 162.5 177 62.1
Gorai.005G077500 Gossypium raimondii HOM05D005519 ORTHO05D006423 8.3e-38 161.0 178 64.0
Ciclev10002625m.g Citrus clementina HOM05D005519 ORTHO05D006423 1.1e-37 160.6 184 61.4
Sc26g0002910 Simmondsia chinensis HOM05D005519 ORTHO05D006423 1.1e-37 160.6 179 59.2
Migut.C00964 Erythranthe guttata HOM05D005519 ORTHO05D006423 1.8e-37 159.8 184 55.4
PSO675G0400 Papaver somniferum HOM05D005519 ORTHO05D006423 4.1e-37 158.7 191 59.7
FAN27G0467 Fragaria x ananassa HOM05D005519 ORTHO05D006423 5.4e-37 158.3 172 60.5
Nn5g28816 Nelumbo nucifera HOM05D005519 ORTHO05D006423 7.0e-37 157.9 158 67.7
FAN15G1092 Fragaria x ananassa HOM05D003947 ORTHO05D004614 2.0e-36 156.4 136 71.3
FAN24G1125 Fragaria x ananassa HOM05D003947 ORTHO05D004614 2.7e-36 156.0 144 68.1
HPP92_000679 Vanilla planifolia HOM05D005519 ORTHO05D006423 5.9e-36 154.8 148 58.1
HanXRQChr11g0320251 Helianthus annuus HOM05D005519 ORTHO05D006423 1.7e-35 153.3 180 62.8
MBI04_g08940_MAGBIO Magnolia biondii HOM05D005519 ORTHO05D006423 1.7e-35 153.3 182 64.8
ECA246G0665 Erigeron canadensis HOM05D003947 ORTHO05D006423 2.5e-34 149.4 125 67.2
ATR0580G316 Amborella trichopoda HOM05D005519 ORTHO05D006423 5.6e-34 148.3 180 58.3
Zm00001eb160790 Zea mays HOM05D005519 ORTHO05D006423 9.5e-34 147.5 165 53.3
GSVIVG01034578001 Vitis vinifera HOM05D005519 ORTHO05D006423 4.7e-33 145.2 84 85.7
AUR62026639 Chenopodium quinoa HOM05D003947 ORTHO05D004614 6.2e-33 144.8 87 82.8
Sed0018725 Sechium edule HOM05D005519 ORTHO05D006423 1.4e-32 143.7 146 59.6
Zm00001eb357520 Zea mays HOM05D005519 ORTHO05D006423 2.3e-32 142.9 156 59.0
MSTRG.1105 Avicennia marina HOM05D000084 ORTHO05D006423 1.9e-29 133.3 121 66.1
AUR62034898 Chenopodium quinoa HOM05D005519 ORTHO05D006423 1.6e-28 130.2 75 85.3
BraA05t21288Z Brassica rapa HOM05D003947 ORTHO05D006423 2.3e-27 126.3 72 90.3
A05p24090 Brassica napus HOM05D011378 ORTHO05D006423 5.0e-27 125.2 111 64.9
Nn1g06007 Nelumbo nucifera HOM05D005519 ORTHO05D006423 6.6e-27 124.8 138 60.9
Os01g0589800 Oryza sativa ssp. japonica HOM05D005519 ORTHO05D006423 1.5e-26 123.6 70 85.7
COL.COLO4_03361 Corchorus olitorius HOM05D005519 ORTHO05D006423 2.1e-25 119.8 69 79.7
Dinv41044 Davidia involucrata HOM05D005519 ORTHO05D006423 2.0e-23 113.2 116 69.0
AagrBONN_evm.TU.Sc2ySwM_117.629 Anthoceros agrestis HOM05D005519 ORTHO05D006423 3.7e-22 109.0 145 53.1
Mapoly0065s0010 Marchantia polymorpha HOM05D005519 ORTHO05D006423 4.1e-21 105.5 84 60.7
SMO139G0065 Selaginella moellendorffii HOM05D005519 ORTHO05D006423 2.1e-20 103.2 133 52.6
Actinidia17771 Actinidia chinensis HOM05D005519 ORTHO05D006423 6.0e-20 101.7 105 58.1
CBR_g32244 Chara braunii HOM05D005519 ORTHO05D006423 1.0e-19 100.9 133 42.9
Cre06.g251150 Chlamydomonas reinhardtii HOM05D005519 ORTHO05D006423 8.6e-19 97.8 81 59.3
Oeu051280.1 Olea europaea HOM05D005519 ORTHO05D006423 1.1e-18 97.4 146 50.7
MCO05G699 Micromonas commoda HOM05D005519 ORTHO05D006423 9.5e-18 94.4 79 55.7
Hund30143 Selenicereus undatus HOM05D005519 ORTHO05D006423 3.6e-17 92.4 170 51.8
MELO3C029825.2 Cucumis melo HOM05D005519 ORTHO05D006423 1.1e-16 90.9 113 58.4
Eucgr.L00901 Eucalyptus grandis HOM05D005519 ORTHO05D006423 4.1e-13 79.0 119 52.9
CSS0025090 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 5.4e-13 78.6 79 72.2
PRCOL_00003386 Prasinoderma coloniale HOM05D005519 ORTHO05D006423 3.3e-10 69.3 67 52.2
Pp3c1_8300 Physcomitrium patens HOM05D005519 ORTHO05D006423 1.3e-06 57.4 39 59.0


User provided reference genes

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