Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G48040 Arabidopsis lyrata HOM05D006511 ORTHO05D007567 1.2e-56 223.0 119 100.0
AT1G33500 Arabidopsis thaliana HOM05D006511 ORTHO05D007567 3.0e-47 191.8 111 91.9
Carub.0001s3169 Capsella rubella HOM05D006511 ORTHO05D007567 3.3e-46 188.3 112 89.3
AL1G47890 Arabidopsis lyrata HOM05D006511 ORTHO05D007567 1.3e-45 186.4 112 89.3
Sp1g28980 Schrenkiella parvula HOM05D006511 ORTHO05D007567 1.7e-42 176.0 112 83.9
BcaB03g13696 Brassica carinata HOM05D006511 ORTHO05D007567 6.4e-42 174.1 110 82.7
CARHR032940 Cardamine hirsuta HOM05D006511 ORTHO05D007567 1.1e-41 173.3 110 83.6
BraA05t21311Z Brassica rapa HOM05D006511 ORTHO05D007567 4.2e-41 171.4 110 82.7
BcaC05g27802 Brassica carinata HOM05D006511 ORTHO05D007567 7.9e-40 167.2 110 80.9
Aa31LG6G7970 Aethionema arabicum HOM05D006511 ORTHO05D007567 4.3e-38 161.4 108 80.6
BolC5t32531H Brassica oleracea HOM05D006511 ORTHO05D007567 1.1e-36 156.8 135 66.7
C05p38000 Brassica napus HOM05D006511 ORTHO05D007567 1.2e-35 153.3 135 65.9
Thhalv10008295m.g Eutrema salsugineum HOM05D006511 ORTHO05D007567 5.7e-30 134.4 110 70.0
THA.LOC104815798 Tarenaya hassleriana HOM05D006511 ORTHO05D007567 8.2e-29 130.6 108 61.1
FAN19G0686 Fragaria x ananassa HOM05D006511 ORTHO05D007567 8.4e-26 120.6 112 56.2
RcHm_v2.0_Chr6g0249621 Rosa chinensis HOM05D006511 ORTHO05D007567 5.5e-25 117.9 112 53.6
FvH4_2g00330 Fragaria vesca HOM05D006511 ORTHO05D007567 1.6e-24 116.3 108 55.6
FAN24G0692 Fragaria x ananassa HOM05D006511 ORTHO05D007567 1.6e-24 116.3 108 55.6
FAN20G0885 Fragaria x ananassa HOM05D006511 ORTHO05D007567 1.0e-23 113.6 120 52.5
Dinv22148 Davidia involucrata HOM05D006511 ORTHO05D007567 1.3e-23 113.2 112 53.6
Atru.chr13.2578 Acer truncatum HOM05D006511 ORTHO05D007567 1.8e-23 112.8 107 57.0
Phvul.011G215700 Phaseolus vulgaris HOM05D006511 ORTHO05D007567 1.8e-23 112.8 106 54.7
Lj3g0014137 Lotus japonicus HOM05D006511 ORTHO05D007567 3.9e-23 111.7 108 53.7
MD05G1006300 Malus domestica HOM05D006511 ORTHO05D007567 5.1e-23 111.3 105 56.2
QL09p001374 Quercus lobata HOM05D006511 ORTHO05D007567 6.7e-23 110.9 116 50.0
CiPaw.03G012800 Carya illinoinensis HOM05D006511 ORTHO05D007567 8.7e-23 110.5 116 51.7
Gohir.D08G249200 Gossypium hirsutum HOM05D006511 ORTHO05D007567 4.3e-22 108.2 111 51.4
Gorai.004G265800 Gossypium raimondii HOM05D006511 ORTHO05D007567 4.3e-22 108.2 111 51.4
VMungo1127G0740 Vigna mungo HOM05D006511 ORTHO05D007567 7.4e-22 107.5 106 51.9
Manes.18G109250 Manihot esculenta HOM05D006511 ORTHO05D007567 1.6e-21 106.3 114 56.1
Medtr1g067710 Medicago truncatula HOM05D006511 ORTHO05D007567 1.6e-21 106.3 108 51.9
arahy.Tifrunner.gnm1.ann1.FKD4F4 Arachis hypogaea HOM05D006511 ORTHO05D007567 6.3e-21 104.4 108 47.2
arahy.Tifrunner.gnm1.ann1.HN79E8 Arachis hypogaea HOM05D006511 ORTHO05D007567 6.3e-21 104.4 108 47.2
Thecc.08G168400 Theobroma cacao HOM05D006511 ORTHO05D007567 8.2e-21 104.0 107 52.3
CSS0025861 Camellia sinensis var. sinensis HOM05D006511 ORTHO05D007567 2.4e-20 102.4 93 55.9
Lalb_Chr19g0131901 Lupinus albus HOM05D006511 ORTHO05D007567 3.1e-20 102.1 112 43.8
Cfa008039 Carpinus fangiana HOM05D006511 ORTHO05D007567 4.1e-20 101.7 106 53.8
Psat7g227400 Pisum sativum HOM05D006511 ORTHO05D007567 5.3e-20 101.3 108 50.0
Sed0008597 Sechium edule HOM05D006511 ORTHO05D007567 5.3e-20 101.3 105 49.5
TPR.G34175 Trifolium pratense HOM05D006511 ORTHO05D007567 1.2e-19 100.1 108 48.1
Potri.013G095400 Populus trichocarpa HOM05D006511 ORTHO05D007567 1.5e-19 99.8 116 46.6
Cpa.g.sc142.8 Carica papaya HOM05D006511 ORTHO05D007567 3.4e-19 98.6 105 48.6
SalBow7G4276 Salvia bowleyana HOM05D006511 ORTHO05D007567 3.4e-19 98.6 98 55.1
MELO3C008102.2 Cucumis melo HOM05D006511 ORTHO05D007567 4.5e-19 98.2 103 50.5
CsaV3_2G033310 Cucumis sativus L. HOM05D006511 ORTHO05D007567 4.5e-19 98.2 105 49.5
Peaxi162Scf00078g01026 Petunia axillaris HOM05D006511 ORTHO05D007567 4.5e-19 98.2 113 47.8
PGSC0003DMG401019059 Solanum tuberosum HOM05D006511 ORTHO05D007567 4.5e-19 98.2 102 52.9
TAR636G2957 Trochodendron aralioides HOM05D006511 ORTHO05D007567 4.5e-19 98.2 109 51.4
Lsat_1_v5_gn_1_24541 Lactuca sativa HOM05D006511 ORTHO05D007567 5.9e-19 97.8 113 46.0
SGA_v2.0_scaffold118G32636 Striga asiatica HOM05D006511 ORTHO05D007567 5.9e-19 97.8 98 52.0
Eucgr.F04078 Eucalyptus grandis HOM05D006511 ORTHO05D007567 1.7e-18 96.3 108 49.1
Solyc11g045100.2 Solanum lycopersicum HOM05D006511 ORTHO05D007567 1.7e-18 96.3 109 48.6
Ca_13616_v3 Cicer arietinum L. HOM05D006511 ORTHO05D007567 2.2e-18 95.9 127 48.0
Ca_30187_v3 Cicer arietinum L. HOM05D006511 ORTHO05D007567 2.2e-18 95.9 127 48.0
CANSAT56G0749 Cannabis sativa HOM05D006511 ORTHO05D007567 8.5e-18 94.0 98 51.0
Sabra13G0081400 Salix brachista HOM05D006511 ORTHO05D007567 1.1e-17 93.6 116 44.8
Actinidia29367 Actinidia chinensis HOM05D006511 ORTHO05D007567 1.4e-17 93.2 104 51.0
Sopen11g020540 Solanum pennellii HOM05D006511 ORTHO05D007567 1.4e-17 93.2 114 48.2
DCAR_014062 Daucus carota HOM05D006511 ORTHO05D007567 1.9e-17 92.8 110 49.1
HanXRQChr04g0102471 Helianthus annuus HOM05D006511 ORTHO05D007567 1.9e-17 92.8 112 44.6
Nn5g27238 Nelumbo nucifera HOM05D006511 ORTHO05D007567 1.9e-17 92.8 108 46.3
Hund17299 Selenicereus undatus HOM05D006511 ORTHO05D007567 1.9e-17 92.8 100 47.0
MSTRG.1607 Avicennia marina HOM05D006511 ORTHO05D007567 3.2e-17 92.0 113 46.9
Ah.13g067720 Amaranthus hybridus HOM05D006511 ORTHO05D007567 5.5e-17 91.3 94 47.9
HanXRQChr04g0102481 Helianthus annuus HOM05D006511 ORTHO05D007567 5.5e-17 91.3 112 42.0
ClCG11G008290 Citrullus lanatus HOM05D006511 ORTHO05D007567 2.1e-16 89.4 119 45.4
ATR1204G001 Amborella trichopoda HOM05D006511 ORTHO05D007567 2.7e-16 89.0 100 46.0
Sc01g0000050 Simmondsia chinensis HOM05D006511 ORTHO05D007567 2.3e-15 85.9 100 44.0
TWI12G0802 Tripterygium wilfordii HOM05D006511 ORTHO05D007567 2.3e-15 85.9 97 49.5
COL.COLO4_05796 Corchorus olitorius HOM05D006511 ORTHO05D007567 3.0e-15 85.5 93 51.6
Sc01g0000190 Simmondsia chinensis HOM05D006511 ORTHO05D007567 3.0e-15 85.5 102 43.1
Prupe.8G003600 Prunus persica HOM05D006511 ORTHO05D007567 8.8e-15 84.0 99 48.5
Ciclev10023084m.g Citrus clementina HOM05D006511 ORTHO05D007567 1.1e-14 83.6 99 48.5
Migut.C01397 Erythranthe guttata HOM05D006511 ORTHO05D007567 1.5e-14 83.2 97 46.4
MBI15_g27821_MAGBIO Magnolia biondii HOM05D006511 ORTHO05D007567 1.5e-14 83.2 79 53.2
Rhsim02G0172300 Rhododendron simsii HOM05D006511 ORTHO05D007567 1.5e-14 83.2 84 54.8
AUR62038542 Chenopodium quinoa HOM05D006511 ORTHO05D007567 2.0e-14 82.8 100 44.0
MBI15_g27824_MAGBIO Magnolia biondii HOM05D006511 ORTHO05D007567 2.0e-14 82.8 109 43.1
PSO384G4286 Papaver somniferum HOM05D006511 ORTHO05D007567 3.3e-14 82.0 101 42.6
EL10Ac1g01283 Beta vulgaris HOM05D006511 ORTHO05D007567 4.3e-14 81.6 106 40.6
Glyma.12G241400 Glycine max HOM05D006511 ORTHO05D007567 4.3e-14 81.6 106 46.2
Gohir.A08G228900 Gossypium hirsutum HOM05D006511 ORTHO05D007567 5.7e-14 81.3 112 42.0
Nitab4.5_0000009g0490 Nicotiana tabacum HOM05D006511 ORTHO05D007567 7.4e-14 80.9 80 52.5
ECA247G1184 Erigeron canadensis HOM05D006511 ORTHO05D007567 9.7e-14 80.5 104 41.3
Haze_13990 Corylus avellana HOM05D006511 ORTHO05D007567 1.3e-13 80.1 95 50.5
Nn5g27242 Nelumbo nucifera HOM05D006511 ORTHO05D007567 1.7e-13 79.7 85 49.4
Nitab4.5_0001489g0030 Nicotiana tabacum HOM05D006511 ORTHO05D007567 2.4e-12 75.9 93 48.4
Zm00001eb028220 Zea mays HOM05D006511 ORTHO05D007567 6.9e-12 74.3 97 46.4
Hma1.2p1_1476F.1_g285810 Hydrangea macrophylla HOM05D006511 ORTHO05D007567 1.5e-11 73.2 56 62.5
HPP92_003819 Vanilla planifolia HOM05D006511 ORTHO05D007567 1.7e-10 69.7 96 38.5
Aqoxy6G00041 Aquilegia oxysepala HOM05D006511 ORTHO05D007567 4.2e-09 65.1 119 35.3
Lj8A308G12 Lonicera japonica HOM05D006511 ORTHO05D007567 6.1e-08 61.2 105 39.0
Haze_13997 Corylus avellana HOM05D006511 ORTHO05D007567 6.7e-07 57.8 63 52.4
unitig_749.g13868 Utricularia gibba HOM05D006511 ORTHO05D007567 6.7e-07 57.8 102 36.3
Duzib116G0864 Durio zibethinus HOM05D006511 ORTHO05D007567 8.8e-07 57.4 118 34.7
Haze_13999 Corylus avellana HOM05D006511 ORTHO05D007567 2.6e-06 55.8 87 44.8
vmacro11028 Vaccinium macrocarpon HOM05D006511 ORTHO05D007567 3.3e-06 55.5 56 51.8


User provided reference genes

Program Settings