Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G47900 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 1.5e-259 899.0 462 100.0
AT1G33520 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 4.3e-243 844.3 463 93.5
Carub.0001s3171 Capsella rubella HOM05D004572 ORTHO05D005425 5.4e-230 800.8 464 88.6
Sp1g28990 Schrenkiella parvula HOM05D004572 ORTHO05D005425 7.1e-222 773.9 463 86.6
CARHR032960 Cardamine hirsuta HOM05D004572 ORTHO05D005425 1.3e-218 763.1 463 86.2
Thhalv10007601m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 4.8e-218 761.1 463 85.7
BcaB03g13695 Brassica carinata HOM05D004572 ORTHO05D005425 1.1e-198 696.8 464 80.4
BraA05t21310Z Brassica rapa HOM05D004572 ORTHO05D005425 2.5e-198 695.7 462 80.3
BcaC05g27801 Brassica carinata HOM05D004572 ORTHO05D005425 5.5e-198 694.5 464 80.2
C05p37990 Brassica napus HOM05D004572 ORTHO05D005425 5.5e-198 694.5 464 80.2
Aa31LG6G7980 Aethionema arabicum HOM05D004572 ORTHO05D005425 6.1e-197 691.0 465 76.3
BolC5t32530H Brassica oleracea HOM05D004572 ORTHO05D005425 3.7e-194 681.8 465 79.1
THA.LOC104815806 Tarenaya hassleriana HOM05D004572 ORTHO05D005425 4.4e-163 578.6 471 66.0
Gorai.009G267300 Gossypium raimondii HOM05D004572 ORTHO05D005425 1.6e-125 453.8 477 56.4
Gohir.D05G255680 Gossypium hirsutum HOM05D004572 ORTHO05D005425 8.1e-125 451.4 477 56.2
Thecc.04G269400 Theobroma cacao HOM05D004572 ORTHO05D005425 1.8e-124 450.3 479 53.9
Gohir.A05G253900 Gossypium hirsutum HOM05D004572 ORTHO05D005425 6.9e-124 448.4 477 55.8
Duzib268G1853 Durio zibethinus HOM05D004572 ORTHO05D005425 1.5e-123 447.2 470 55.5
AL7G28150 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 1.7e-122 443.7 463 56.6
Carub.0007s1601 Capsella rubella HOM05D004572 ORTHO05D005425 6.4e-122 441.8 465 57.0
Duzib177G0040 Durio zibethinus HOM05D004572 ORTHO05D005425 1.4e-121 440.7 476 53.8
TWI32G1304 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 1.1e-118 431.0 483 52.8
Manes.03G127200 Manihot esculenta HOM05D004572 ORTHO05D005425 5.6e-118 428.7 478 52.7
Manes.03G127100 Manihot esculenta HOM05D004572 ORTHO05D005425 1.1e-116 424.5 479 51.8
Hund14323 Selenicereus undatus HOM05D004572 ORTHO05D005425 1.8e-116 423.7 485 52.0
Dinv09440 Davidia involucrata HOM05D004572 ORTHO05D005425 7.6e-115 418.3 504 51.4
COL.COLO4_28616 Corchorus olitorius HOM05D004572 ORTHO05D005425 2.2e-114 416.8 472 49.2
Ah.08g210120 Amaranthus hybridus HOM05D004572 ORTHO05D005425 1.1e-113 414.5 481 51.6
Lj2g0021533 Lotus japonicus HOM05D004572 ORTHO05D005425 5.5e-113 412.1 465 50.8
Hma1.2p1_0127F.1_g059630 Hydrangea macrophylla HOM05D004572 ORTHO05D005425 7.9e-112 408.3 497 51.3
arahy.Tifrunner.gnm1.ann1.Z20ZUZ Arachis hypogaea HOM05D004572 ORTHO05D005425 3.0e-111 406.4 478 50.6
TAR629G0838 Trochodendron aralioides HOM05D004572 ORTHO05D005425 3.0e-111 406.4 507 47.9
Nn5g27612 Nelumbo nucifera HOM05D004572 ORTHO05D005425 5.1e-111 405.6 526 48.3
Psat6g099680 Pisum sativum HOM05D004572 ORTHO05D005425 1.1e-110 404.4 467 49.9
ClCG07G002440 Citrullus lanatus HOM05D004572 ORTHO05D005425 1.5e-110 404.1 493 50.5
arahy.Tifrunner.gnm1.ann1.GWI8GZ Arachis hypogaea HOM05D004572 ORTHO05D005425 2.5e-110 403.3 469 50.7
Prupe.4G208800 Prunus persica HOM05D004572 ORTHO05D005425 9.6e-110 401.4 479 50.5
AT4G25020 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 2.8e-109 399.8 462 51.7
Sc07g0008270 Simmondsia chinensis HOM05D004572 ORTHO05D005425 2.8e-109 399.8 534 47.9
Cc04_g13510 Coffea canephora HOM05D004572 ORTHO05D005425 6.9e-108 395.2 483 50.9
arahy.Tifrunner.gnm1.ann1.41JFP3 Arachis hypogaea HOM05D004572 ORTHO05D005425 1.5e-107 394.0 458 51.5
Rhsim01G0089200 Rhododendron simsii HOM05D004572 ORTHO05D005425 2.0e-107 393.7 493 48.7
Phvul.003G026500 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 7.6e-107 391.7 482 47.7
CANSAT56G1258 Cannabis sativa HOM05D004572 ORTHO05D005425 1.3e-106 391.0 509 47.5
VMungo0720G3103 Vigna mungo HOM05D004572 ORTHO05D005425 1.3e-106 391.0 485 47.2
CsaV3_3G030260 Cucumis sativus L. HOM05D004572 ORTHO05D005425 1.7e-106 390.6 493 48.9
MELO3C022741.2 Cucumis melo HOM05D004572 ORTHO05D005425 8.4e-106 388.3 498 48.2
Phvul.003G004000 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 1.1e-105 387.9 485 47.8
Cc04_g13460 Coffea canephora HOM05D004572 ORTHO05D005425 1.4e-105 387.5 486 50.0
MD11G1222200 Malus domestica HOM05D004572 ORTHO05D005425 1.9e-105 387.1 482 50.0
Nitab4.5_0001131g0030 Nicotiana tabacum HOM05D004572 ORTHO05D005425 2.5e-105 386.7 484 47.3
CANSAT56G0747 Cannabis sativa HOM05D004572 ORTHO05D005425 3.2e-105 386.3 502 46.8
PGSC0003DMG400029573 Solanum tuberosum HOM05D004572 ORTHO05D005425 4.2e-105 386.0 493 46.2
Peaxi162Scf00445g00102 Petunia axillaris HOM05D004572 ORTHO05D005425 7.1e-105 385.2 485 47.0
Sopen08g023180 Solanum pennellii HOM05D004572 ORTHO05D005425 9.3e-105 384.8 493 46.2
Solyc08g074570.1 Solanum lycopersicum HOM05D004572 ORTHO05D005425 1.2e-104 384.4 495 45.9
Glyma.07G197900 Glycine max HOM05D004572 ORTHO05D005425 1.6e-104 384.0 475 46.9
Potri.001G129700 Populus trichocarpa HOM05D004572 ORTHO05D005425 4.6e-104 382.5 468 48.9
Potri.003G104200 Populus trichocarpa HOM05D004572 ORTHO05D005425 6.0e-104 382.1 474 48.5
Nitab4.5_0000907g0020 Nicotiana tabacum HOM05D004572 ORTHO05D005425 1.0e-103 381.3 488 46.7
RcHm_v2.0_Chr5g0038051 Rosa chinensis HOM05D004572 ORTHO05D005425 2.3e-103 380.2 475 48.2
Sabra03G0071200 Salix brachista HOM05D004572 ORTHO05D005425 3.9e-103 379.4 478 47.7
AUR62008525 Chenopodium quinoa HOM05D004572 ORTHO05D005425 1.5e-102 377.5 478 48.5
CSS0029181 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 1.9e-102 377.1 519 45.7
CSS0036523 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 1.9e-102 377.1 519 45.7
Sed0022149 Sechium edule HOM05D004572 ORTHO05D005425 4.3e-102 375.9 514 47.1
MSTRG.11833 Avicennia marina HOM05D004572 ORTHO05D005425 1.6e-101 374.0 482 48.3
FAN21G2024 Fragaria x ananassa HOM05D004572 ORTHO05D005425 2.1e-101 373.6 477 46.8
PGR042G2393 Punica granatum HOM05D004572 ORTHO05D005425 4.8e-101 372.5 443 48.1
TPR.G29795 Trifolium pratense HOM05D004572 ORTHO05D005425 4.8e-101 372.5 467 47.3
AUR62019030 Chenopodium quinoa HOM05D004572 ORTHO05D005425 1.1e-100 371.3 488 48.2
FAN11G3304 Fragaria x ananassa HOM05D004572 ORTHO05D005425 1.1e-100 371.3 477 46.5
FvH4_3g22160 Fragaria vesca HOM05D004572 ORTHO05D005425 1.4e-100 370.9 477 46.5
FAN16G2201 Fragaria x ananassa HOM05D004572 ORTHO05D005425 1.4e-100 370.9 477 46.5
MBI12_g26901_MAGBIO Magnolia biondii HOM05D004572 ORTHO05D005425 5.3e-100 369.0 460 47.0
DCAR_017646 Daucus carota HOM05D004572 ORTHO05D005425 6.9e-100 368.6 480 46.7
DCAR_023418 Daucus carota HOM05D004572 ORTHO05D005425 9.0e-100 368.2 477 46.8
Aqoxy5G04375 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 2.6e-99 366.7 521 44.0
Oeu028098.1 Olea europaea HOM05D004572 ORTHO05D005425 7.6e-99 365.2 482 46.3
PSO675G6986 Papaver somniferum HOM05D004572 ORTHO05D005425 1.3e-98 364.4 508 43.9
PSO541G6108 Papaver somniferum HOM05D004572 ORTHO05D005425 3.8e-98 362.8 509 43.6
MD03G1208000 Malus domestica HOM05D004572 ORTHO05D005425 6.5e-98 362.1 475 47.6
vmacro05137 Vaccinium macrocarpon HOM05D004572 ORTHO05D005425 6.5e-98 362.1 508 45.7
Aa31LG9G8960 Aethionema arabicum HOM05D000113 ORTHO05D002571 2.5e-97 360.1 393 56.0
Migut.A00508 Erythranthe guttata HOM05D004572 ORTHO05D005425 2.1e-96 357.1 487 46.2
QL93p0146_0040 Quercus lobata HOM05D004572 ORTHO05D005425 2.1e-96 357.1 469 46.7
QL06p018920 Quercus lobata HOM05D004572 ORTHO05D005425 1.5e-94 350.9 473 46.5
Medtr1g038340 Medicago truncatula HOM05D004572 ORTHO05D005425 4.3e-94 349.4 401 49.4
Lj8P410T5 Lonicera japonica HOM05D004572 ORTHO05D005425 9.7e-94 348.2 344 55.5
SalBow4G0115 Salvia bowleyana HOM05D004572 ORTHO05D005425 9.7e-94 348.2 480 46.7
Ca_12422_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 3.4e-91 339.7 401 47.9
Ca_12425_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 3.4e-91 339.7 401 47.9
SGA_v2.0_scaffold27G11714 Striga asiatica HOM05D004572 ORTHO05D005425 5.9e-91 339.0 466 44.4
Manes.15G074001 Manihot esculenta HOM05D004572 ORTHO05D005425 1.3e-90 337.8 451 45.9
QL12p001966 Quercus lobata HOM05D004572 ORTHO05D005425 5.0e-90 335.9 452 45.6
Glyma.20G002200 Glycine max HOM05D004572 ORTHO05D005425 2.5e-89 333.6 416 46.6
CAN.G195.29 Capsicum annuum HOM05D004572 ORTHO05D005425 2.1e-88 330.5 404 47.0
Eucgr.E01208 Eucalyptus grandis HOM05D004572 ORTHO05D005425 6.1e-88 328.9 497 43.3
unitig_748.g8160 Utricularia gibba HOM05D004572 ORTHO05D005425 1.5e-86 324.3 473 42.9
Thhalv10027298m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 2.6e-86 323.6 434 47.5
Sabra01G0100000 Salix brachista HOM05D004572 ORTHO05D005425 2.8e-85 320.1 368 51.1
ECA248G3611 Erigeron canadensis HOM05D004572 ORTHO05D005425 4.2e-81 306.2 465 44.1
Lalb_Chr20g0109201 Lupinus albus HOM05D004572 ORTHO05D005425 4.2e-81 306.2 485 42.1
Haze_21257 Corylus avellana HOM05D004572 ORTHO05D005425 3.6e-80 303.1 470 42.1
HanXRQChr04g0098951 Helianthus annuus HOM05D004572 ORTHO05D005425 1.0e-79 301.6 468 42.9
ATR0579G060 Amborella trichopoda HOM05D004572 ORTHO05D005425 6.7e-79 298.9 557 39.5
ECA233G3653 Erigeron canadensis HOM05D004572 ORTHO05D005425 1.7e-77 294.3 467 43.9
CiPaw.11G104400 Carya illinoinensis HOM05D004572 ORTHO05D005425 2.2e-77 293.9 475 41.3
Cfa012912 Carpinus fangiana HOM05D004572 ORTHO05D005425 3.1e-76 290.0 471 41.8
Atru.chr6.2109 Acer truncatum HOM05D004572 ORTHO05D005425 6.5e-74 282.3 481 40.7
CARHR232410 Cardamine hirsuta HOM05D004572 ORTHO05D005425 1.5e-73 281.2 369 48.2
Cpa.g.sc21.98 Carica papaya HOM05D004572 ORTHO05D005425 9.4e-73 278.5 401 44.6
Cfa012902 Carpinus fangiana HOM05D004572 ORTHO05D005425 4.0e-71 273.1 444 41.4
Oeu048006.1 Olea europaea HOM05D004572 ORTHO05D005425 1.7e-66 257.7 403 41.7
CDE02G0510 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 8.5e-66 255.4 332 45.8
Ciclev10001464m.g Citrus clementina HOM05D004572 ORTHO05D005425 5.7e-62 242.7 474 36.3
SHI08932 Sapria himalayana HOM05D004572 ORTHO05D005425 1.6e-59 234.6 467 37.5
Os03g0253500 Oryza sativa ssp. japonica HOM05D004572 ORTHO05D005425 3.5e-59 233.4 495 36.0
SMO347G0031 Selaginella moellendorffii HOM05D004572 ORTHO05D005425 5.0e-58 229.6 419 37.7
HPP92_014435 Vanilla planifolia HOM05D004572 ORTHO05D005425 2.5e-57 227.3 482 35.3
VMungo0251G2350 Vigna mungo HOM05D004572 ORTHO05D005425 1.0e-55 221.9 349 38.4
Zm00001eb398470 Zea mays HOM05D004572 ORTHO05D005425 1.8e-52 211.1 457 36.5
SEGI_34794 Sequoiadendron giganteum HOM05D004572 ORTHO05D005425 1.0e-50 205.3 734 27.7
Mapoly0027s0115 Marchantia polymorpha HOM05D004572 ORTHO05D005425 4.3e-41 173.3 651 26.7
TWI34G1093 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 1.6e-40 171.4 215 47.9
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 8.0e-40 169.1 235 43.8
Lsat_1_v5_gn_6_80001 Lactuca sativa HOM05D004572 ORTHO05D005425 3.4e-38 163.7 205 47.8
MCO10G255 Micromonas commoda HOM05D004572 ORTHO05D005425 3.4e-38 163.7 484 30.2
Cfa021184 Carpinus fangiana HOM05D004572 ORTHO05D005425 7.0e-36 156.0 209 47.8
CBR_g50444 Chara braunii HOM05D004572 ORTHO05D005425 1.6e-35 154.8 586 28.3
CBR_g54973 Chara braunii HOM05D004572 ORTHO05D005425 4.3e-33 146.7 575 27.1
PSO017G4650 Papaver somniferum HOM05D004572 ORTHO05D005425 8.9e-31 139.0 308 32.8
RcHm_v2.0_Chr5g0037991 Rosa chinensis HOM05D004572 ORTHO05D005425 1.4e-23 115.2 214 36.4
Prupe.4G208700 Prunus persica HOM05D004572 ORTHO05D005425 5.2e-23 113.2 209 37.3
PRCOL_00000575 Prasinoderma coloniale HOM05D004572 ORTHO05D005425 1.5e-22 111.7 526 25.3
Aqoxy7G00153 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 3.4e-22 110.5 213 36.2
Glyma.09G283500 Glycine max HOM05D004572 ORTHO05D005425 1.7e-21 108.2 197 37.1
HanXRQChr03g0083281 Helianthus annuus HOM05D004572 ORTHO05D005425 4.1e-20 103.6 198 36.9
AagrBONN_evm.TU.Sc2ySwM_344.5065 Anthoceros agrestis HOM05D004572 ORTHO05D005425 1.6e-19 101.7 170 37.6
FAN16G0157 Fragaria x ananassa HOM05D004572 ORTHO05D005425 7.8e-19 99.4 201 35.3
PSO170G2332 Papaver somniferum HOM05D004572 ORTHO05D005425 1.0e-18 99.0 138 39.1
Cre06.g303500 Chlamydomonas reinhardtii HOM05D004572 ORTHO05D005425 6.6e-18 96.3 592 24.0
CDE04G1584 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 1.1e-17 95.5 168 33.3
CBR_g2939 Chara braunii HOM05D007240 ORTHO05D003552 2.5e-17 94.4 304 28.0
Pp3c1_630 Physcomitrium patens HOM05D004572 ORTHO05D005425 5.6e-17 93.2 217 33.6
Sed0007980 Sechium edule HOM05D004572 ORTHO05D005425 7.3e-17 92.8 84 57.1
TWI74G0109 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 2.1e-16 91.3 205 32.7
SalBow7G4536 Salvia bowleyana HOM05D000482 ORTHO05D000349 1.4e-15 88.6 111 45.9
Nn3g17595 Nelumbo nucifera HOM05D004572 ORTHO05D005425 9.0e-15 85.9 154 41.6
Sabra05G0101600 Salix brachista HOM05D004572 ORTHO05D005425 2.6e-14 84.3 69 53.6
CDE11G0183 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 1.6e-11 75.1 206 28.2
Cc11_g00690 Coffea canephora HOM05D004572 ORTHO05D005425 2.3e-10 71.2 107 45.8
Aa31LG6G7990 Aethionema arabicum HOM05D004572 ORTHO05D005425 5.1e-10 70.1 59 64.4
COL.COLO4_35853 Corchorus olitorius HOM05D004572 ORTHO05D005425 5.1e-10 70.1 94 43.6
Cc02_g26180 Coffea canephora HOM05D004572 ORTHO05D005425 1.1e-09 68.9 106 47.2
FvH4_3g22140 Fragaria vesca HOM05D004572 ORTHO05D005425 5.6e-09 66.6 177 33.3
AagrBONN_evm.TU.Sc2ySwM_344.715 Anthoceros agrestis HOM05D004572 ORTHO05D005425 2.8e-08 64.3 67 49.3
Sabra05G0101700 Salix brachista HOM05D004572 ORTHO05D005425 4.0e-07 60.5 47 55.3
MCO11G291 Micromonas commoda HOM05D003624 ORTHO05D004188 5.3e-07 60.1 93 43.0
Atru.chr11.11 Acer truncatum HOM05D003624 ORTHO05D004188 6.9e-07 59.7 134 34.3
ECA232G3640 Erigeron canadensis HOM05D003624 ORTHO05D004188 6.9e-07 59.7 213 30.5
Cre16.g654350 Chlamydomonas reinhardtii HOM05D003624 ORTHO05D004188 2.0e-06 58.2 93 38.7
ECA247G0176 Erigeron canadensis HOM05D003624 ORTHO05D004188 3.4e-06 57.4 192 28.1
Ah.16g102270 Amaranthus hybridus HOM05D003624 ORTHO05D004188 5.8e-06 56.6 155 29.7
Migut.B01491 Erythranthe guttata HOM05D003624 ORTHO05D004188 7.6e-06 56.2 206 29.1


User provided reference genes

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