Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G47890 Arabidopsis lyrata HOM05D006511 ORTHO05D007567 1.6e-86 322.8 175 100.0
AT1G33500 Arabidopsis thaliana HOM05D006511 ORTHO05D007567 1.4e-80 303.1 175 93.7
Carub.0001s3169 Capsella rubella HOM05D006511 ORTHO05D007567 1.1e-79 300.1 175 91.4
BcaB03g13696 Brassica carinata HOM05D006511 ORTHO05D007567 1.0e-75 287.0 173 87.9
CARHR032940 Cardamine hirsuta HOM05D006511 ORTHO05D007567 1.2e-73 280.0 173 86.1
Sp1g28980 Schrenkiella parvula HOM05D006511 ORTHO05D007567 2.1e-73 279.3 175 85.7
BraA05t21311Z Brassica rapa HOM05D006511 ORTHO05D007567 2.7e-73 278.9 173 86.1
BcaC05g27802 Brassica carinata HOM05D006511 ORTHO05D007567 1.8e-72 276.2 173 85.5
BolC5t32531H Brassica oleracea HOM05D006511 ORTHO05D007567 2.4e-69 265.8 198 75.3
C05p38000 Brassica napus HOM05D006511 ORTHO05D007567 2.6e-68 262.3 198 74.7
Aa31LG6G7970 Aethionema arabicum HOM05D006511 ORTHO05D007567 8.0e-65 250.8 171 78.9
Thhalv10008295m.g Eutrema salsugineum HOM05D006511 ORTHO05D007567 1.2e-60 236.9 187 72.2
THA.LOC104815798 Tarenaya hassleriana HOM05D006511 ORTHO05D007567 6.3e-54 214.5 171 64.9
AL1G48040 Arabidopsis lyrata HOM05D006511 ORTHO05D007567 6.3e-46 188.0 112 89.3
FAN19G0686 Fragaria x ananassa HOM05D006511 ORTHO05D007567 2.2e-38 162.9 202 47.5
FvH4_2g00330 Fragaria vesca HOM05D006511 ORTHO05D007567 4.1e-37 158.7 202 46.5
FAN24G0692 Fragaria x ananassa HOM05D006511 ORTHO05D007567 4.1e-37 158.7 202 46.5
RcHm_v2.0_Chr6g0249621 Rosa chinensis HOM05D006511 ORTHO05D007567 1.3e-35 153.7 202 44.6
Dinv22148 Davidia involucrata HOM05D006511 ORTHO05D007567 2.5e-34 149.4 201 46.3
MD05G1006300 Malus domestica HOM05D006511 ORTHO05D007567 4.3e-34 148.7 199 45.2
QL09p001374 Quercus lobata HOM05D006511 ORTHO05D007567 1.2e-33 147.1 202 44.1
CSS0025861 Camellia sinensis var. sinensis HOM05D006511 ORTHO05D007567 2.8e-33 146.0 186 48.9
FAN20G0885 Fragaria x ananassa HOM05D006511 ORTHO05D007567 4.7e-33 145.2 210 43.3
HanXRQChr04g0102481 Helianthus annuus HOM05D006511 ORTHO05D007567 1.0e-32 144.1 183 45.4
Manes.18G109250 Manihot esculenta HOM05D006511 ORTHO05D007567 1.4e-32 143.7 203 44.8
Actinidia29367 Actinidia chinensis HOM05D006511 ORTHO05D007567 3.1e-32 142.5 200 45.5
HanXRQChr04g0102471 Helianthus annuus HOM05D006511 ORTHO05D007567 6.8e-32 141.4 183 44.8
CiPaw.03G012800 Carya illinoinensis HOM05D006511 ORTHO05D007567 8.9e-32 141.0 199 44.2
Phvul.011G215700 Phaseolus vulgaris HOM05D006511 ORTHO05D007567 8.9e-32 141.0 203 44.8
TAR636G2957 Trochodendron aralioides HOM05D006511 ORTHO05D007567 4.4e-31 138.7 178 48.3
Lsat_1_v5_gn_1_24541 Lactuca sativa HOM05D006511 ORTHO05D007567 2.2e-30 136.3 198 43.4
Potri.013G095400 Populus trichocarpa HOM05D006511 ORTHO05D007567 1.9e-29 133.3 202 41.6
Thecc.08G168400 Theobroma cacao HOM05D006511 ORTHO05D007567 3.2e-29 132.5 201 42.3
Psat7g227400 Pisum sativum HOM05D006511 ORTHO05D007567 1.2e-28 130.6 201 41.3
PGSC0003DMG401019059 Solanum tuberosum HOM05D006511 ORTHO05D007567 2.0e-28 129.8 188 43.1
VMungo1127G0740 Vigna mungo HOM05D006511 ORTHO05D007567 2.0e-28 129.8 217 39.6
CANSAT56G0749 Cannabis sativa HOM05D006511 ORTHO05D007567 4.6e-28 128.6 202 42.6
Gorai.004G265800 Gossypium raimondii HOM05D006511 ORTHO05D007567 7.8e-28 127.9 200 40.0
Gohir.D08G249200 Gossypium hirsutum HOM05D006511 ORTHO05D007567 1.0e-27 127.5 200 39.5
Solyc11g045100.2 Solanum lycopersicum HOM05D006511 ORTHO05D007567 1.0e-27 127.5 184 42.9
Lj3g0014137 Lotus japonicus HOM05D006511 ORTHO05D007567 1.7e-27 126.7 176 43.8
Nn5g27238 Nelumbo nucifera HOM05D006511 ORTHO05D007567 2.3e-27 126.3 206 39.3
SalBow7G4276 Salvia bowleyana HOM05D006511 ORTHO05D007567 3.0e-27 125.9 178 46.1
Sabra13G0081400 Salix brachista HOM05D006511 ORTHO05D007567 5.0e-27 125.2 201 39.8
TPR.G34175 Trifolium pratense HOM05D006511 ORTHO05D007567 8.6e-27 124.4 208 38.5
Sopen11g020540 Solanum pennellii HOM05D006511 ORTHO05D007567 1.1e-26 124.0 187 41.2
Hund17299 Selenicereus undatus HOM05D006511 ORTHO05D007567 1.5e-26 123.6 194 39.7
SGA_v2.0_scaffold118G32636 Striga asiatica HOM05D006511 ORTHO05D007567 1.9e-26 123.2 200 41.5
PSO384G4286 Papaver somniferum HOM05D006511 ORTHO05D007567 4.3e-26 122.1 193 42.0
Sed0008597 Sechium edule HOM05D006511 ORTHO05D007567 4.3e-26 122.1 203 39.4
Ah.13g067720 Amaranthus hybridus HOM05D006511 ORTHO05D007567 5.6e-26 121.7 202 37.1
TWI12G0802 Tripterygium wilfordii HOM05D006511 ORTHO05D007567 1.2e-25 120.6 181 42.0
DCAR_014062 Daucus carota HOM05D006511 ORTHO05D007567 1.6e-25 120.2 202 41.1
Prupe.8G003600 Prunus persica HOM05D006511 ORTHO05D007567 3.6e-25 119.0 189 41.3
Migut.C01397 Erythranthe guttata HOM05D006511 ORTHO05D007567 6.2e-25 118.2 185 43.2
Rhsim02G0172300 Rhododendron simsii HOM05D006511 ORTHO05D007567 1.4e-24 117.1 189 41.8
AUR62038542 Chenopodium quinoa HOM05D006511 ORTHO05D007567 1.8e-24 116.7 192 38.5
Gohir.A08G228900 Gossypium hirsutum HOM05D006511 ORTHO05D007567 1.8e-24 116.7 180 42.8
ECA247G1184 Erigeron canadensis HOM05D006511 ORTHO05D007567 2.3e-24 116.3 199 38.7
Medtr1g067710 Medicago truncatula HOM05D006511 ORTHO05D007567 4.0e-24 115.5 108 54.6
Atru.chr13.2578 Acer truncatum HOM05D006511 ORTHO05D007567 6.8e-24 114.8 168 41.7
Sc01g0000050 Simmondsia chinensis HOM05D006511 ORTHO05D007567 1.2e-23 114.0 193 38.9
MBI15_g27824_MAGBIO Magnolia biondii HOM05D006511 ORTHO05D007567 4.4e-23 112.1 190 39.5
MSTRG.1607 Avicennia marina HOM05D006511 ORTHO05D007567 7.5e-23 111.3 165 41.8
Cfa008039 Carpinus fangiana HOM05D006511 ORTHO05D007567 9.8e-23 110.9 172 41.9
Glyma.12G241400 Glycine max HOM05D006511 ORTHO05D007567 4.9e-22 108.6 192 40.6
arahy.Tifrunner.gnm1.ann1.HN79E8 Arachis hypogaea HOM05D006511 ORTHO05D007567 6.4e-22 108.2 252 32.1
Peaxi162Scf00078g01026 Petunia axillaris HOM05D006511 ORTHO05D007567 1.1e-21 107.5 162 40.1
MBI15_g27821_MAGBIO Magnolia biondii HOM05D006511 ORTHO05D007567 1.9e-21 106.7 190 38.9
Ca_13616_v3 Cicer arietinum L. HOM05D006511 ORTHO05D007567 4.1e-21 105.5 200 37.0
Ca_30187_v3 Cicer arietinum L. HOM05D006511 ORTHO05D007567 4.1e-21 105.5 200 37.0
Lalb_Chr19g0131901 Lupinus albus HOM05D006511 ORTHO05D007567 4.1e-21 105.5 111 45.9
arahy.Tifrunner.gnm1.ann1.FKD4F4 Arachis hypogaea HOM05D006511 ORTHO05D007567 2.7e-20 102.8 113 45.1
Cpa.g.sc142.8 Carica papaya HOM05D006511 ORTHO05D007567 1.0e-19 100.9 199 36.2
Eucgr.F04078 Eucalyptus grandis HOM05D006511 ORTHO05D007567 1.3e-19 100.5 108 50.0
ClCG11G008290 Citrullus lanatus HOM05D006511 ORTHO05D007567 3.9e-19 99.0 213 35.7
MELO3C008102.2 Cucumis melo HOM05D006511 ORTHO05D007567 1.1e-18 97.4 172 39.5
CsaV3_2G033310 Cucumis sativus L. HOM05D006511 ORTHO05D007567 2.5e-18 96.3 106 50.9
Zm00001eb028220 Zea mays HOM05D006511 ORTHO05D007567 4.3e-18 95.5 201 36.8
HPP92_003819 Vanilla planifolia HOM05D006511 ORTHO05D007567 8.1e-17 91.3 174 34.5
Sc01g0000190 Simmondsia chinensis HOM05D006511 ORTHO05D007567 3.1e-16 89.4 98 43.9
ATR1204G001 Amborella trichopoda HOM05D006511 ORTHO05D007567 4.0e-16 89.0 193 32.6
Nitab4.5_0001489g0030 Nicotiana tabacum HOM05D006511 ORTHO05D007567 4.4e-15 85.5 138 39.1
Ciclev10023084m.g Citrus clementina HOM05D006511 ORTHO05D007567 5.8e-15 85.1 97 47.4
Aqoxy6G00041 Aquilegia oxysepala HOM05D006511 ORTHO05D007567 7.6e-15 84.7 173 35.3
Hma1.2p1_1476F.1_g285820 Hydrangea macrophylla HOM05D006511 ORTHO05D007567 1.7e-14 83.6 142 42.3
EL10Ac1g01283 Beta vulgaris HOM05D006511 ORTHO05D007567 2.9e-14 82.8 144 36.1
Haze_13990 Corylus avellana HOM05D006511 ORTHO05D007567 2.9e-14 82.8 155 38.7
COL.COLO4_05796 Corchorus olitorius HOM05D006511 ORTHO05D007567 3.7e-14 82.4 129 41.9
Nn5g27242 Nelumbo nucifera HOM05D006511 ORTHO05D007567 6.4e-14 81.6 85 49.4
Lj8A308G12 Lonicera japonica HOM05D006511 ORTHO05D007567 1.1e-13 80.9 173 38.2
Nitab4.5_0000009g0490 Nicotiana tabacum HOM05D006511 ORTHO05D007567 2.4e-13 79.7 142 35.9
AUR62013391 Chenopodium quinoa HOM05D006511 ORTHO05D007567 5.4e-13 78.6 174 33.3
Hma1.2p1_1476F.1_g285810 Hydrangea macrophylla HOM05D006511 ORTHO05D007567 3.5e-12 75.9 56 62.5
CDE10G1127 Ceratophyllum demersum HOM05D006511 ORTHO05D007567 9.6e-10 67.8 171 27.5
Hma1.2p1_1405F.1_g281380 Hydrangea macrophylla HOM05D006511 ORTHO05D007567 8.1e-09 64.7 71 53.5
Haze_13997 Corylus avellana HOM05D006511 ORTHO05D007567 2.4e-08 63.2 63 54.0
PGR004G0115 Punica granatum HOM05D006511 ORTHO05D007567 1.5e-07 60.5 144 34.0
vmacro11028 Vaccinium macrocarpon HOM05D006511 ORTHO05D007567 1.5e-07 60.5 56 55.4
unitig_749.g13868 Utricularia gibba HOM05D006511 ORTHO05D007567 3.4e-07 59.3 94 36.2
Haze_13999 Corylus avellana HOM05D006511 ORTHO05D007567 5.8e-07 58.5 70 54.3
FAN20G1821 Fragaria x ananassa HOM05D006511 ORTHO05D007567 5.8e-07 58.5 119 38.7
vmacro11027 Vaccinium macrocarpon HOM05D006511 ORTHO05D007567 5.8e-07 58.5 119 40.3
FvH4_2g04930 Fragaria vesca HOM05D006511 ORTHO05D007567 1.3e-06 57.4 184 30.4
FAN24G3334 Fragaria x ananassa HOM05D006511 ORTHO05D007567 1.3e-06 57.4 142 33.1
Cc10_g16070 Coffea canephora HOM05D006511 ORTHO05D007567 2.2e-06 56.6 118 34.7


User provided reference genes

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