Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G46920 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 3.1e-97 358.6 199 100.0
AT1G32690 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 1.6e-90 336.3 203 92.1
CARHR032080 Cardamine hirsuta HOM05D004742 ORTHO05D005677 6.4e-87 324.3 207 83.6
Thhalv10008795m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 4.3e-83 311.6 208 78.4
Sp1g28270 Schrenkiella parvula HOM05D004742 ORTHO05D005677 1.3e-74 283.5 208 71.6
Carub.0001s3103 Capsella rubella HOM05D004742 ORTHO05D005677 1.1e-73 280.4 208 76.9
BcaB03g13715 Brassica carinata HOM05D004742 ORTHO05D005677 5.0e-71 271.6 208 73.1
BolC3t19547H Brassica oleracea HOM05D004742 ORTHO05D005677 3.0e-68 262.3 208 67.8
BcaC01g01725 Brassica carinata HOM05D004742 ORTHO05D005677 1.9e-67 259.6 208 67.3
C03p72460 Brassica napus HOM05D004742 ORTHO05D005677 1.9e-67 259.6 208 67.3
BcaC05g27832 Brassica carinata HOM05D004742 ORTHO05D005677 4.3e-67 258.5 203 70.4
C05p38300 Brassica napus HOM05D004742 ORTHO05D005677 4.3e-67 258.5 203 70.4
BolC5t32562H Brassica oleracea HOM05D004742 ORTHO05D005677 4.3e-67 258.5 203 70.4
A05p24650 Brassica napus HOM05D004742 ORTHO05D005677 6.1e-61 238.0 208 66.3
BraA05t21351Z Brassica rapa HOM05D004742 ORTHO05D005677 6.1e-61 238.0 208 66.3
Aa31LG2G13280 Aethionema arabicum HOM05D004742 ORTHO05D005677 1.1e-59 233.8 209 66.0
Aa31LG9G15210 Aethionema arabicum HOM05D004742 ORTHO05D005677 1.4e-54 216.9 199 60.8
Thhalv10017262m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 3.0e-52 209.1 207 58.5
Sp4g17420 Schrenkiella parvula HOM05D004742 ORTHO05D005677 1.5e-51 206.8 208 59.1
THA.LOC104814447 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 1.3e-50 203.8 221 55.7
THA.LOC104812742 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 2.6e-48 196.1 219 58.0
Carub.0004s1689 Capsella rubella HOM05D004742 ORTHO05D005677 4.4e-43 178.7 206 53.4
AL4G31210 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 3.1e-41 172.6 211 50.2
BcaC02g11593 Brassica carinata HOM05D004742 ORTHO05D005677 1.6e-40 170.2 207 51.2
A05p10550 Brassica napus HOM05D004742 ORTHO05D005677 7.7e-40 167.9 204 51.0
BraA05t19993Z Brassica rapa HOM05D004742 ORTHO05D005677 7.7e-40 167.9 204 51.0
C04p13600 Brassica napus HOM05D004742 ORTHO05D005677 9.4e-38 161.0 206 50.0
BolC4t22951H Brassica oleracea HOM05D004742 ORTHO05D005677 3.6e-37 159.1 205 49.8
AT2G35200 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 1.0e-36 157.5 213 49.3
Duzib205G0563 Durio zibethinus HOM05D004742 ORTHO05D005677 5.2e-36 155.2 227 44.9
CARHR129360 Cardamine hirsuta HOM05D004742 ORTHO05D005677 6.8e-36 154.8 203 48.3
COL.COLO4_17015 Corchorus olitorius HOM05D004742 ORTHO05D005677 3.4e-35 152.5 225 47.6
Thecc.03G226400 Theobroma cacao HOM05D004742 ORTHO05D005677 9.8e-35 151.0 227 44.1
Duzib084G1225 Durio zibethinus HOM05D004742 ORTHO05D005677 5.9e-32 141.7 228 39.9
TWI60G1233 Tripterygium wilfordii HOM05D004742 ORTHO05D005677 1.3e-31 140.6 236 41.9
Gohir.A08G156100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.7e-31 140.2 229 43.2
Gohir.A09G199100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.7e-31 140.2 232 40.9
Duzib084G0476 Durio zibethinus HOM05D004742 ORTHO05D005677 2.2e-31 139.8 228 41.2
Ca_06086_v3 Cicer arietinum L. HOM05D004742 ORTHO05D005677 5.5e-30 135.2 242 42.1
Gohir.D08G176700 Gossypium hirsutum HOM05D004742 ORTHO05D005677 5.5e-30 135.2 230 43.5
Gorai.004G184600 Gossypium raimondii HOM05D004742 ORTHO05D005677 5.5e-30 135.2 230 43.5
Potri.001G141600 Populus trichocarpa HOM05D004742 ORTHO05D005677 1.8e-28 130.2 234 41.9
Gohir.A11G030800 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.5e-27 127.1 226 42.0
Gorai.006G216900 Gossypium raimondii HOM05D004742 ORTHO05D005677 1.5e-27 127.1 232 35.8
Duzib068G0638 Durio zibethinus HOM05D004742 ORTHO05D005677 4.4e-27 125.6 223 39.5
Gohir.D11G029500 Gossypium hirsutum HOM05D004742 ORTHO05D005677 4.4e-27 125.6 226 40.7
QL12p005003 Quercus lobata HOM05D004742 ORTHO05D005677 4.4e-27 125.6 217 41.9
Atru.chr6.1683 Acer truncatum HOM05D004742 ORTHO05D005677 5.7e-27 125.2 221 43.9
Gorai.007G032300 Gossypium raimondii HOM05D004742 ORTHO05D005677 5.7e-27 125.2 226 38.1
CANSAT21G2184 Cannabis sativa HOM05D004742 ORTHO05D005677 9.8e-27 124.4 242 40.9
Gohir.D09G193400 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.3e-26 124.0 232 35.3
Ciclev10016629m.g Citrus clementina HOM05D004742 ORTHO05D005677 1.7e-26 123.6 228 40.4
TPR.G1023 Trifolium pratense HOM05D004742 ORTHO05D005677 1.7e-26 123.6 239 41.8
Manes.17G011300 Manihot esculenta HOM05D004742 ORTHO05D005677 6.3e-26 121.7 236 41.1
CsaV3_3G001600 Cucumis sativus L. HOM05D004742 ORTHO05D005677 1.1e-25 120.9 235 39.6
MELO3C027362.2 Cucumis melo HOM05D004742 ORTHO05D005677 1.4e-25 120.6 230 40.4
Medtr5g030210 Medicago truncatula HOM05D004742 ORTHO05D005677 1.8e-25 120.2 246 39.4
Medtr5g430370 Medicago truncatula HOM05D004742 ORTHO05D005677 1.8e-25 120.2 246 39.4
ClCG10G001520 Citrullus lanatus HOM05D004742 ORTHO05D005677 2.4e-25 119.8 237 40.1
Lsat_1_v5_gn_3_18001 Lactuca sativa HOM05D004742 ORTHO05D005677 2.4e-25 119.8 245 38.8
Dinv25223 Davidia involucrata HOM05D004742 ORTHO05D005677 7.0e-25 118.2 227 39.6
Phvul.002G140700 Phaseolus vulgaris HOM05D004742 ORTHO05D005677 1.6e-24 117.1 240 41.2
Manes.15G188900 Manihot esculenta HOM05D004742 ORTHO05D005677 2.0e-24 116.7 237 40.9
Lalb_Chr09g0325611 Lupinus albus HOM05D004742 ORTHO05D005677 5.9e-24 115.2 237 40.9
Sabra03G0062000 Salix brachista HOM05D004742 ORTHO05D001134 5.9e-24 115.2 214 38.3
arahy.Tifrunner.gnm1.ann1.EZQY9P Arachis hypogaea HOM05D004742 ORTHO05D005677 7.8e-24 114.8 238 38.2
arahy.Tifrunner.gnm1.ann1.RMRK9P Arachis hypogaea HOM05D004742 ORTHO05D005677 7.8e-24 114.8 238 38.2
Potri.003G092700 Populus trichocarpa HOM05D004742 ORTHO05D005677 7.8e-24 114.8 232 39.2
VMungo1215G1913 Vigna mungo HOM05D004742 ORTHO05D005677 2.9e-23 112.8 241 39.4
PGR031G2228 Punica granatum HOM05D004742 ORTHO05D005677 3.8e-23 112.5 253 36.4
Hma1.2p1_0303F.1_g119030 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 1.1e-22 110.9 234 39.7
HanXRQChr17g0536221 Helianthus annuus HOM05D004742 ORTHO05D005677 1.9e-22 110.2 232 36.2
CiPaw.11G094200 Carya illinoinensis HOM05D004742 ORTHO05D005677 3.3e-22 109.4 240 37.5
Glyma.09G205100 Glycine max HOM05D004742 ORTHO05D005677 3.3e-22 109.4 244 39.8
CSS0004262 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 4.3e-22 109.0 223 38.6
Psat2g136480 Pisum sativum HOM05D004742 ORTHO05D005677 5.6e-22 108.6 235 43.0
Cfa012451 Carpinus fangiana HOM05D004742 ORTHO05D005677 7.3e-22 108.2 235 37.4
Nitab4.5_0010403g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 7.3e-22 108.2 249 35.3
CSS0028083 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 2.1e-21 106.7 223 38.6
PGSC0003DMG400017538 Solanum tuberosum HOM05D004742 ORTHO05D005677 6.1e-21 105.1 252 36.9
Glyma.01G017800 Glycine max HOM05D004742 ORTHO05D005677 1.0e-20 104.4 241 38.6
Nn1g00114 Nelumbo nucifera HOM05D004742 ORTHO05D005677 2.3e-20 103.2 220 35.9
Ah.12g055130 Amaranthus hybridus HOM05D004742 ORTHO05D005677 3.0e-20 102.8 209 34.4
Lj2g0023551 Lotus japonicus HOM05D004742 ORTHO05D005677 5.2e-20 102.1 242 33.9
Sopen08g025400 Solanum pennellii HOM05D004742 ORTHO05D005677 1.5e-19 100.5 254 35.4
FAN13G2654 Fragaria x ananassa HOM05D004742 ORTHO05D005677 2.0e-19 100.1 253 34.0
TAR374G0395 Trochodendron aralioides HOM05D004742 ORTHO05D005677 2.0e-19 100.1 215 36.7
Solyc08g076870.1 Solanum lycopersicum HOM05D004742 ORTHO05D005677 2.6e-19 99.8 254 34.3
FAN08G0406 Fragaria x ananassa HOM05D004742 ORTHO05D005677 3.4e-19 99.4 252 31.3
Prupe.5G034500 Prunus persica HOM05D004742 ORTHO05D005677 3.4e-19 99.4 248 36.3
FvH4_5g22200 Fragaria vesca HOM05D004742 ORTHO05D005677 4.4e-19 99.0 252 31.3
FAN04G2756 Fragaria x ananassa HOM05D004742 ORTHO05D005677 5.7e-19 98.6 253 33.6
Oeu006253.1 Olea europaea HOM05D004742 ORTHO05D005677 5.7e-19 98.6 215 38.1
Lj3A410T15 Lonicera japonica HOM05D004742 ORTHO05D005677 9.8e-19 97.8 202 40.1
EL10Ac5g12098 Beta vulgaris HOM05D004742 ORTHO05D005677 1.7e-18 97.1 208 37.0
CSS0042903 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 1.7e-18 97.1 230 33.0
SalBow6G3311 Salvia bowleyana HOM05D004742 ORTHO05D005677 2.9e-18 96.3 236 30.5
CiPaw.12G064300 Carya illinoinensis HOM05D004742 ORTHO05D005677 4.9e-18 95.5 236 32.6
FAN18G2180 Fragaria x ananassa HOM05D004742 ORTHO05D005677 4.9e-18 95.5 252 30.2
Haze_08216 Corylus avellana HOM05D004742 ORTHO05D005677 2.4e-17 93.2 224 32.6
Nitab4.5_0000529g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 4.1e-17 92.4 251 33.5
RcHm_v2.0_Chr7g0209881 Rosa chinensis HOM05D004742 ORTHO05D005677 7.0e-17 91.7 254 33.9
Actinidia03372 Actinidia chinensis HOM05D004742 ORTHO05D005677 1.6e-16 90.5 237 32.9
HanXRQChr06g0167541 Helianthus annuus HOM05D004742 ORTHO05D005677 2.0e-16 90.1 227 30.8
Actinidia14802 Actinidia chinensis HOM05D004742 ORTHO05D005677 2.7e-16 89.7 224 32.6
MD16G1273500 Malus domestica HOM05D004742 ORTHO05D005677 4.6e-16 89.0 256 35.9
Migut.E00942 Erythranthe guttata HOM05D004742 ORTHO05D005677 2.3e-15 86.7 233 30.5
MD06G1035300 Malus domestica HOM05D004742 ORTHO05D005677 3.0e-15 86.3 252 34.1
Eucgr.D02205 Eucalyptus grandis HOM05D004742 ORTHO05D005677 3.9e-15 85.9 245 35.1
EL10Ac5g12097 Beta vulgaris HOM05D004742 ORTHO05D005677 1.1e-14 84.3 195 35.9
CSS0044674 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 1.9e-14 83.6 211 33.6
DCAR_032208 Daucus carota HOM05D004742 ORTHO05D005677 2.5e-14 83.2 218 30.7
TAR629G2541 Trochodendron aralioides HOM05D004742 ORTHO05D005677 2.5e-14 83.2 168 39.9
Lalb_Chr16g0381321 Lupinus albus HOM05D004742 ORTHO05D005677 4.3e-14 82.4 217 31.3
TAR636G0473 Trochodendron aralioides HOM05D004742 ORTHO05D005677 1.6e-13 80.5 220 33.6
TAR375G0192 Trochodendron aralioides HOM05D004742 ORTHO05D005677 3.6e-13 79.3 140 37.1
SGA_v2.0_scaffold6G03142 Striga asiatica HOM05D004742 ORTHO05D005677 6.2e-13 78.6 201 32.8
MBI04_g25303_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 2.3e-12 76.6 195 35.4
Rhsim07G0128300 Rhododendron simsii HOM05D004742 ORTHO05D005677 2.3e-12 76.6 214 28.0
Rhsim11G0016100 Rhododendron simsii HOM05D004742 ORTHO05D005677 2.3e-12 76.6 135 43.0
Actinidia25968 Actinidia chinensis HOM05D004742 ORTHO05D005677 6.8e-12 75.1 244 31.1
MSTRG.12162 Avicennia marina HOM05D004742 ORTHO05D005677 1.2e-11 74.3 226 28.3
Lsat_1_v5_gn_6_421 Lactuca sativa HOM05D004742 ORTHO05D005677 1.2e-11 74.3 240 30.8
MBI04_g46668_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 2.0e-11 73.6 196 33.7
HPP92_020967 Vanilla planifolia HOM05D004742 ORTHO05D005677 2.0e-11 73.6 185 35.1
ATR0665G540 Amborella trichopoda HOM05D004742 ORTHO05D005677 4.4e-11 72.4 94 48.9
Aqoxy3G02336 Aquilegia oxysepala HOM05D004742 ORTHO05D005677 4.4e-11 72.4 244 33.6
DCAR_008263 Daucus carota HOM05D004742 ORTHO05D005677 8.3e-10 68.2 254 29.5
CDE06G1944 Ceratophyllum demersum HOM05D003296 ORTHO05D003720 1.1e-09 67.8 159 37.7
HPP92_014611 Vanilla planifolia HOM05D004742 ORTHO05D005677 1.4e-09 67.4 202 33.2
SGA_v2.0_scaffold20G09271 Striga asiatica HOM05D004742 ORTHO05D005677 2.4e-09 66.6 216 28.2
PSO210G7694 Papaver somniferum HOM05D004742 ORTHO05D005677 3.2e-09 66.2 124 37.1
Sed0001883 Sechium edule HOM05D004742 ORTHO05D005677 3.2e-09 66.2 234 29.9
Zm00001eb251250 Zea mays HOM05D004742 ORTHO05D005677 2.7e-08 63.2 196 37.2
Cc08_g02870 Coffea canephora HOM05D004742 ORTHO05D005677 1.3e-07 60.8 155 35.5
CDE11G0293 Ceratophyllum demersum HOM05D004742 ORTHO05D005677 6.6e-07 58.5 104 38.5
AUR62018706 Chenopodium quinoa HOM05D004742 ORTHO05D005677 6.6e-07 58.5 202 29.7
Hma1.2p1_0574F.1_g181490 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 6.6e-07 58.5 129 41.1
Nitab4.5_0006434g0030 Nicotiana tabacum HOM05D004742 ORTHO05D005677 6.6e-07 58.5 139 31.7
HanXRQChr12g0360911 Helianthus annuus HOM05D004742 ORTHO05D005677 1.9e-06 57.0 231 24.7
Nitab4.5_0008566g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 4.3e-06 55.8 223 28.3
DCAR_004297 Daucus carota HOM05D004742 ORTHO05D005677 7.3e-06 55.1 106 34.0


User provided reference genes

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