Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G46150 Arabidopsis lyrata HOM05D005120 ORTHO05D006174 5.7e-273 943.7 507 100.0
AT1G32080 Arabidopsis thaliana HOM05D005120 ORTHO05D006174 1.2e-262 909.4 513 96.5
Carub.0001s3040 Capsella rubella HOM05D005120 ORTHO05D006174 2.8e-259 898.3 515 94.4
CARHR031430 Cardamine hirsuta HOM05D005120 ORTHO05D006174 1.8e-255 885.6 515 94.0
Thhalv10007389m.g Eutrema salsugineum HOM05D005120 ORTHO05D006174 1.4e-250 869.4 515 92.8
Sp1g27750 Schrenkiella parvula HOM05D005120 ORTHO05D006174 2.0e-246 855.5 515 90.9
BcaC05g27930 Brassica carinata HOM05D005120 ORTHO05D006174 1.1e-244 849.7 515 90.3
BraA05t21413Z Brassica rapa HOM05D005120 ORTHO05D006174 1.5e-244 849.4 515 90.5
C05p31470 Brassica napus HOM05D005120 ORTHO05D006174 1.4e-242 842.8 516 90.1
BraA09t38958Z Brassica rapa HOM05D005120 ORTHO05D006174 1.8e-242 842.4 516 89.9
BcaC05g27233 Brassica carinata HOM05D005120 ORTHO05D006174 1.5e-241 839.3 516 89.9
BolC5t31871H Brassica oleracea HOM05D005120 ORTHO05D006174 1.7e-240 835.9 509 90.4
BcaB03g13768 Brassica carinata HOM05D005120 ORTHO05D006174 4.1e-239 831.2 503 90.3
BcaB07g32869 Brassica carinata HOM05D005120 ORTHO05D006174 6.6e-237 823.9 515 88.9
A05p25290 Brassica napus HOM05D005120 ORTHO05D006174 1.5e-236 822.8 501 90.2
C05p39360 Brassica napus HOM05D005120 ORTHO05D006174 1.5e-236 822.8 501 89.8
BolC5t32672H Brassica oleracea HOM05D005120 ORTHO05D006174 1.5e-236 822.8 501 89.8
Aa31LG2G13920 Aethionema arabicum HOM05D005120 ORTHO05D006174 1.2e-233 813.1 516 86.2
A09p34100 Brassica napus HOM05D005120 ORTHO05D006174 1.1e-226 790.0 488 88.9
THA.LOC104798500 Tarenaya hassleriana HOM05D005120 ORTHO05D006174 2.0e-225 785.8 521 83.3
Aa31LG2G11060 Aethionema arabicum HOM05D005120 ORTHO05D006174 1.0e-205 720.3 443 86.5
Cfa012552 Carpinus fangiana HOM05D005120 ORTHO05D006174 1.9e-204 716.1 457 83.4
Cpa.g.sc757.1 Carica papaya HOM05D005120 ORTHO05D006174 2.4e-202 709.1 455 83.3
CiPaw.11G101100 Carya illinoinensis HOM05D005120 ORTHO05D006174 2.6e-201 705.7 457 82.1
CANSAT21G0750 Cannabis sativa HOM05D005120 ORTHO05D006174 4.5e-201 704.9 460 81.5
Manes.17G006500 Manihot esculenta HOM05D005120 ORTHO05D006174 1.3e-200 703.4 458 82.1
Prupe.5G024500 Prunus persica HOM05D005120 ORTHO05D006174 4.9e-200 701.4 500 77.2
Potri.003G099600 Populus trichocarpa HOM05D005120 ORTHO05D006174 8.4e-200 700.7 459 82.4
Duzib205G1724 Durio zibethinus HOM05D005120 ORTHO05D006174 5.5e-199 698.0 457 81.2
Eucgr.E01259 Eucalyptus grandis HOM05D005120 ORTHO05D006174 2.7e-198 695.7 493 76.1
Thecc.03G314000 Theobroma cacao HOM05D005120 ORTHO05D006174 3.5e-198 695.3 457 80.7
Lj4g0011317 Lotus japonicus HOM05D005120 ORTHO05D006174 4.6e-198 694.9 456 80.7
Solyc08g076290.3 Solanum lycopersicum HOM05D005120 ORTHO05D006174 4.6e-198 694.9 499 74.7
Sopen08g024900 Solanum pennellii HOM05D005120 ORTHO05D006174 7.9e-198 694.1 477 77.8
MD06G1023600 Malus domestica HOM05D005120 ORTHO05D006174 1.0e-197 693.7 461 80.7
PGR042G0860 Punica granatum HOM05D005120 ORTHO05D006174 3.0e-197 692.2 455 81.8
QL12p000342 Quercus lobata HOM05D005120 ORTHO05D006174 3.0e-197 692.2 450 81.6
Sabra03G0067700 Salix brachista HOM05D005120 ORTHO05D006174 3.9e-197 691.8 459 81.3
RcHm_v2.0_Chr7g0212851 Rosa chinensis HOM05D005120 ORTHO05D006174 8.7e-197 690.6 485 77.1
TWI60G0565 Tripterygium wilfordii HOM05D005120 ORTHO05D006174 1.9e-196 689.5 521 73.7
Nitab4.5_0000543g0120 Nicotiana tabacum HOM05D005120 ORTHO05D006174 2.5e-196 689.1 471 78.1
Gorai.003G186700 Gossypium raimondii HOM05D005120 ORTHO05D006174 4.3e-196 688.3 461 79.2
FAN18G1216 Fragaria x ananassa HOM05D005120 ORTHO05D006174 5.7e-196 688.0 476 77.1
FvH4_5g23540 Fragaria vesca HOM05D005120 ORTHO05D006174 1.3e-195 686.8 476 76.9
FAN08G2640 Fragaria x ananassa HOM05D005120 ORTHO05D006174 1.3e-195 686.8 485 75.9
Gohir.D03G177466 Gossypium hirsutum HOM05D005120 ORTHO05D006174 1.3e-195 686.8 461 79.0
Gohir.A03G000018 Gossypium hirsutum HOM05D005120 ORTHO05D006174 1.6e-195 686.4 461 79.2
FAN18G2593 Fragaria x ananassa HOM05D005120 ORTHO05D006174 2.1e-195 686.0 476 77.1
PGSC0003DMG402009291 Solanum tuberosum HOM05D005120 ORTHO05D006174 2.1e-195 686.0 435 82.8
Lalb_Chr16g0391911 Lupinus albus HOM05D005120 ORTHO05D006174 2.8e-195 685.6 443 81.7
FAN04G0205 Fragaria x ananassa HOM05D005120 ORTHO05D006174 4.8e-195 684.9 486 75.9
Haze_08107 Corylus avellana HOM05D005120 ORTHO05D006174 8.2e-195 684.1 511 74.2
COL.COLO4_16896 Corchorus olitorius HOM05D005120 ORTHO05D006174 9.0e-194 680.6 452 79.0
MELO3C026723.2 Cucumis melo HOM05D005120 ORTHO05D006174 4.5e-193 678.3 513 71.2
Medtr8g070830 Medicago truncatula HOM05D005120 ORTHO05D006174 1.0e-192 677.2 456 78.7
Atru.chr6.1569 Acer truncatum HOM05D005120 ORTHO05D006174 2.2e-192 676.0 460 78.5
Psat4g111760 Pisum sativum HOM05D005120 ORTHO05D006174 4.9e-192 674.9 431 81.7
Cc08_g03980 Coffea canephora HOM05D005120 ORTHO05D006174 1.9e-191 672.9 524 72.3
GSVIVG01029984001 Vitis vinifera HOM05D005120 ORTHO05D006174 1.9e-191 672.9 443 79.7
ClCG07G002270 Citrullus lanatus HOM05D005120 ORTHO05D006174 2.5e-191 672.5 534 70.4
arahy.Tifrunner.gnm1.ann1.H9FFKJ Arachis hypogaea HOM05D005120 ORTHO05D006174 4.2e-191 671.8 517 71.8
CsaV3_3G030430 Cucumis sativus L. HOM05D005120 ORTHO05D006174 4.2e-191 671.8 515 70.9
Nitab4.5_0006395g0010 Nicotiana tabacum HOM05D005120 ORTHO05D006174 7.1e-191 671.0 421 83.4
Glyma.16G095100 Glycine max HOM05D005120 ORTHO05D006174 1.6e-190 669.8 472 76.9
Rhsim11G0027600 Rhododendron simsii HOM05D005120 ORTHO05D006174 1.6e-190 669.8 471 76.6
Dinv29029 Davidia involucrata HOM05D005120 ORTHO05D006174 2.7e-190 669.1 431 81.9
Nn1g01918 Nelumbo nucifera HOM05D005120 ORTHO05D006174 2.7e-190 669.1 457 78.8
Sed0007636 Sechium edule HOM05D005120 ORTHO05D006174 3.5e-190 668.7 486 74.3
TPR.G6179 Trifolium pratense HOM05D005120 ORTHO05D006174 1.0e-189 667.2 487 74.7
TAR374G0846 Trochodendron aralioides HOM05D005120 ORTHO05D006174 1.3e-189 666.8 458 77.9
Peaxi162Scf00408g00023 Petunia axillaris HOM05D005120 ORTHO05D006174 2.3e-189 666.0 515 72.8
Phvul.003G274000 Phaseolus vulgaris HOM05D005120 ORTHO05D006174 5.1e-189 664.8 438 79.2
VMungo0251G1066 Vigna mungo HOM05D005120 ORTHO05D006174 8.7e-189 664.1 435 79.5
Lsat_1_v5_gn_6_17781 Lactuca sativa HOM05D005120 ORTHO05D006174 9.7e-188 660.6 458 77.5
arahy.Tifrunner.gnm1.ann1.PMQ83Q Arachis hypogaea HOM05D005120 ORTHO05D006174 1.3e-187 660.2 507 71.4
SGA_v2.0_scaffold42G16013 Striga asiatica HOM05D005120 ORTHO05D006174 3.7e-187 658.7 453 77.5
Oeu042231.1 Olea europaea HOM05D005120 ORTHO05D006174 6.3e-187 657.9 443 77.9
Aqoxy7G00879 Aquilegia oxysepala HOM05D005120 ORTHO05D006174 1.1e-186 657.1 457 77.9
Sc07g0008440 Simmondsia chinensis HOM05D005120 ORTHO05D006174 2.4e-186 656.0 455 76.0
Ah.07g201110 Amaranthus hybridus HOM05D005120 ORTHO05D006174 3.1e-186 655.6 490 73.1
Migut.A00586 Erythranthe guttata HOM05D005120 ORTHO05D006174 3.1e-186 655.6 507 70.4
HanXRQChr02g0050021 Helianthus annuus HOM05D005120 ORTHO05D006174 5.3e-186 654.8 460 75.4
CAN.G773.16 Capsicum annuum HOM05D005120 ORTHO05D006174 9.0e-186 654.1 428 81.1
AUR62018612 Chenopodium quinoa HOM05D005120 ORTHO05D006174 9.0e-186 654.1 539 68.8
MSTRG.11896 Avicennia marina HOM05D005120 ORTHO05D006174 1.2e-185 653.7 485 71.5
Sed0003941 Sechium edule HOM05D005120 ORTHO05D006174 1.2e-185 653.7 512 70.5
vmacro00236 Vaccinium macrocarpon HOM05D005120 ORTHO05D006174 5.9e-185 651.4 430 80.2
SalBow1G1967 Salvia bowleyana HOM05D005120 ORTHO05D006174 2.2e-184 649.4 515 70.5
Hund14388 Selenicereus undatus HOM05D005120 ORTHO05D006174 6.5e-184 647.9 464 73.9
Lj8A318T44 Lonicera japonica HOM05D005120 ORTHO05D006174 1.6e-182 643.3 459 74.5
AUR62007376 Chenopodium quinoa HOM05D005120 ORTHO05D006174 7.9e-182 641.0 404 83.2
Ca_22546_v3 Cicer arietinum L. HOM05D005120 ORTHO05D006174 2.3e-181 639.4 495 70.9
Glyma.01G009900 Glycine max HOM05D005120 ORTHO05D006174 3.0e-181 639.0 459 74.3
EL10Ac5g11981 Beta vulgaris HOM05D005120 ORTHO05D006174 1.5e-180 636.7 523 68.8
MBI04_g36023_MAGBIO Magnolia biondii HOM05D005120 ORTHO05D006174 2.0e-180 636.3 523 68.6
SGA_v2.0_scaffold89G27426 Striga asiatica HOM05D005120 ORTHO05D006174 5.7e-180 634.8 428 78.5
Actinidia27272 Actinidia chinensis HOM05D005120 ORTHO05D006174 9.7e-180 634.0 484 71.1
Glyma.09G211200 Glycine max HOM05D005120 ORTHO05D006174 1.8e-178 629.8 437 76.4
CDE06G0533 Ceratophyllum demersum HOM05D005120 ORTHO05D006174 2.6e-177 625.9 474 70.7
Os01g0511600 Oryza sativa ssp. japonica HOM05D005120 ORTHO05D006174 7.7e-177 624.4 422 76.1
ECA233G2235 Erigeron canadensis HOM05D005120 ORTHO05D006174 2.9e-176 622.5 437 76.0
Phvul.002G132800 Phaseolus vulgaris HOM05D005120 ORTHO05D006174 2.9e-176 622.5 428 75.9
ATR0829G037 Amborella trichopoda HOM05D005120 ORTHO05D006174 1.4e-175 620.2 442 74.2
PSO717G0011 Papaver somniferum HOM05D005120 ORTHO05D006174 9.4e-175 617.5 459 72.5
Nn3g19343 Nelumbo nucifera HOM05D005120 ORTHO05D006174 1.0e-173 614.0 459 72.5
Zm00001eb025160 Zea mays HOM05D005120 ORTHO05D006174 1.4e-173 613.6 457 72.4
Hund11160 Selenicereus undatus HOM05D005120 ORTHO05D006174 1.3e-171 607.1 438 74.7
PSO675G2578 Papaver somniferum HOM05D005120 ORTHO05D006174 1.4e-170 603.6 523 65.8
Atru.chr6.1566 Acer truncatum HOM05D005120 ORTHO05D006174 2.3e-165 586.3 458 72.3
Lalb_Chr16g0380871 Lupinus albus HOM05D005120 ORTHO05D006174 5.2e-165 585.1 416 71.2
DCAR_004262 Daucus carota HOM05D005120 ORTHO05D006174 9.7e-164 580.9 443 71.1
unitig_747.g21935 Utricularia gibba HOM05D005120 ORTHO05D006174 4.1e-162 575.5 460 68.7
CSS0018999 Camellia sinensis var. sinensis HOM05D005120 ORTHO05D006174 8.0e-158 561.2 421 74.3
arahy.Tifrunner.gnm1.ann1.1W9K9Y Arachis hypogaea HOM05D005120 ORTHO05D006174 2.7e-153 546.2 456 65.4
arahy.Tifrunner.gnm1.ann1.5B6WJ4 Arachis hypogaea HOM05D005120 ORTHO05D006174 2.7e-153 546.2 456 65.4
AagrBONN_evm.TU.Sc2ySwM_117.3701 Anthoceros agrestis HOM05D005120 ORTHO05D006174 2.0e-140 503.4 417 62.4
Pp3c1_16500 Physcomitrium patens HOM05D005120 ORTHO05D006174 1.8e-138 496.9 415 62.7
Mapoly0008s0007 Marchantia polymorpha HOM05D005120 ORTHO05D006174 1.8e-133 480.3 440 59.1
Actinidia01339 Actinidia chinensis HOM05D005120 ORTHO05D006174 1.1e-130 471.1 376 71.0
Ciclev10003461m.g Citrus clementina HOM05D005120 ORTHO05D006174 1.5e-124 450.7 307 75.2
SMO347G0341 Selaginella moellendorffii HOM05D005120 ORTHO05D006174 2.8e-118 429.9 367 61.0
Dinv06901 Davidia involucrata HOM05D005120 ORTHO05D006174 2.6e-116 423.3 308 72.1
Atru.chr6.1568 Acer truncatum HOM05D005120 ORTHO05D006174 2.9e-107 393.3 230 91.7
PRCOL_00000663 Prasinoderma coloniale HOM05D005120 ORTHO05D006174 2.5e-95 353.6 415 48.4
Atru.chr6.1567 Acer truncatum HOM05D005120 ORTHO05D006174 4.8e-86 322.8 229 72.9
Lalb_Chr16g0380881 Lupinus albus HOM05D005120 ORTHO05D006174 3.1e-85 320.1 425 46.6
FAN13G2921 Fragaria x ananassa HOM05D005120 ORTHO05D006174 2.9e-83 313.5 333 56.5
Cre09.g394850 Chlamydomonas reinhardtii HOM05D005120 ORTHO05D006174 3.4e-76 290.0 415 40.7
SMO367G1009 Selaginella moellendorffii HOM05D005120 ORTHO05D006174 1.1e-71 275.0 386 38.9
Glyma.08G265967 Glycine max HOM05D005120 ORTHO05D006174 8.2e-70 268.9 236 69.1
CANSAT64G2484 Cannabis sativa HOM05D005120 ORTHO05D006174 1.2e-68 265.0 156 91.0
Zm00001eb025140 Zea mays HOM05D005120 ORTHO05D006174 1.4e-64 251.5 229 60.3
Pp3c4_7680 Physcomitrium patens HOM05D005120 ORTHO05D006174 4.3e-63 246.5 395 34.9
AagrBONN_evm.TU.Sc2ySwM_368.2516 Anthoceros agrestis HOM05D005120 ORTHO05D006174 1.4e-58 231.5 368 37.8
PRCOL_00006607 Prasinoderma coloniale HOM05D005120 ORTHO05D006174 1.5e-55 221.5 453 36.9
CBR_g23155 Chara braunii HOM05D005120 ORTHO05D006174 4.1e-53 213.4 162 69.8
arahy.Tifrunner.gnm1.ann1.B01XES Arachis hypogaea HOM05D005120 ORTHO05D006174 2.3e-48 197.6 248 47.2
PGR044G1750 Punica granatum HOM05D005120 ORTHO05D006174 3.4e-39 167.2 141 68.1
SEGI_09610 Sequoiadendron giganteum HOM05D005120 ORTHO05D006174 2.8e-38 164.1 126 65.9
CARHR291910 Cardamine hirsuta HOM05D005120 ORTHO05D006174 1.7e-30 138.3 84 83.3
SEGI_28661 Sequoiadendron giganteum HOM05D005120 ORTHO05D006174 3.8e-27 127.1 174 47.1
CBR_g23153 Chara braunii HOM05D005120 ORTHO05D006174 4.7e-25 120.2 124 53.2
VMungo0647G0996 Vigna mungo HOM05D005120 ORTHO05D006174 9.8e-23 112.5 97 68.0
Oeu023967.3 Olea europaea HOM05D005120 ORTHO05D006174 1.7e-19 101.7 84 65.5
MCO13G610 Micromonas commoda HOM05D005120 ORTHO05D006174 1.9e-18 98.2 384 26.3
PRCOL_00001036 Prasinoderma coloniale HOM05D001145 ORTHO05D014381 1.7e-14 85.1 423 27.0
PRCOL_00005007 Prasinoderma coloniale HOM05D013059 ORTHO05D014381 6.0e-12 76.6 221 29.0
CDE03G0049 Ceratophyllum demersum HOM05D005120 ORTHO05D006174 3.6e-09 67.4 67 59.7


User provided reference genes

Program Settings