Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G45790 Arabidopsis lyrata HOM05D005907 ORTHO05D007033 1.6e-100 369.4 185 100.0
Carub.0001s3002 Capsella rubella HOM05D005907 ORTHO05D007033 2.4e-83 312.4 185 84.9
CARHR031020 Cardamine hirsuta HOM05D005907 ORTHO05D007033 5.8e-82 307.8 188 81.4
Thhalv10008873m.g Eutrema salsugineum HOM05D005907 ORTHO05D007033 6.2e-76 287.7 186 76.9
A08p10440 Brassica napus HOM05D005907 ORTHO05D007033 1.5e-69 266.5 185 73.0
Sp1g27370 Schrenkiella parvula HOM05D005907 ORTHO05D007033 1.9e-69 266.2 172 77.3
BraA08t33042Z Brassica rapa HOM05D005907 ORTHO05D007033 1.8e-67 259.6 192 70.3
BcaC07g37737 Brassica carinata HOM05D005907 ORTHO05D007033 1.2e-66 256.9 185 70.3
BolC8t48118H Brassica oleracea HOM05D005907 ORTHO05D007033 1.2e-66 256.9 185 70.3
BcaB04g18131 Brassica carinata HOM05D005907 ORTHO05D007033 2.3e-62 242.7 171 71.9
AT1G31720 Arabidopsis thaliana HOM05D005907 ORTHO05D007033 3.9e-62 241.9 132 90.9
Aa31LG2G14390 Aethionema arabicum HOM05D005907 ORTHO05D007033 2.7e-55 219.2 177 66.1
THA.LOC104814387 Tarenaya hassleriana HOM05D005907 ORTHO05D007033 4.8e-52 208.4 190 60.5
Atru.chr8.2614 Acer truncatum HOM05D005907 ORTHO05D007033 3.9e-38 162.2 186 46.8
Lalb_Chr09g0325061 Lupinus albus HOM05D005907 ORTHO05D007033 3.1e-35 152.5 169 45.0
Thecc.03G320600 Theobroma cacao HOM05D005907 ORTHO05D007033 9.1e-35 151.0 173 49.7
Ciclev10012886m.g Citrus clementina HOM05D005907 ORTHO05D007033 2.0e-34 149.8 185 45.9
TAR636G1547 Trochodendron aralioides HOM05D005907 ORTHO05D007033 2.0e-34 149.8 149 50.3
Oeu047809.2 Olea europaea HOM05D005907 ORTHO05D007033 2.6e-34 149.4 190 43.2
Actinidia01244 Actinidia chinensis HOM05D005907 ORTHO05D007033 3.4e-34 149.1 173 47.4
COL.COLO4_16745 Corchorus olitorius HOM05D005907 ORTHO05D007033 1.0e-33 147.5 169 47.3
Peaxi162Scf00876g00429 Petunia axillaris HOM05D005907 ORTHO05D007033 2.2e-33 146.4 166 42.8
Lj3A1053G42 Lonicera japonica HOM05D005907 ORTHO05D007033 2.9e-33 146.0 175 43.4
Duzib205G2043 Durio zibethinus HOM05D005907 ORTHO05D007033 3.8e-33 145.6 173 45.1
Oeu046770.1 Olea europaea HOM05D005907 ORTHO05D007033 6.5e-33 144.8 169 45.6
Lalb_Chr05g0215181 Lupinus albus HOM05D005907 ORTHO05D007033 8.5e-33 144.4 175 41.7
Migut.A00472 Erythranthe guttata HOM05D005907 ORTHO05D007033 1.1e-32 144.1 174 43.7
Lj2g0019236 Lotus japonicus HOM05D005907 ORTHO05D007033 2.5e-32 142.9 174 43.7
Lalb_Chr16g0380441 Lupinus albus HOM05D005907 ORTHO05D007033 3.2e-32 142.5 175 41.1
vmacro00100 Vaccinium macrocarpon HOM05D005907 ORTHO05D007033 4.2e-32 142.1 167 41.3
Glyma.01G153000 Glycine max HOM05D005907 ORTHO05D007033 5.5e-32 141.7 180 40.6
CiPaw.11G074000 Carya illinoinensis HOM05D005907 ORTHO05D007033 9.4e-32 141.0 173 44.5
Cfa012308 Carpinus fangiana HOM05D005907 ORTHO05D007033 1.2e-31 140.6 173 42.8
Glyma.09G218300 Glycine max HOM05D005907 ORTHO05D007033 4.7e-31 138.7 180 39.4
arahy.Tifrunner.gnm1.ann1.4G5U2W Arachis hypogaea HOM05D005907 ORTHO05D007033 6.1e-31 138.3 175 40.6
arahy.Tifrunner.gnm1.ann1.Y9HS7A Arachis hypogaea HOM05D005907 ORTHO05D007033 6.1e-31 138.3 175 40.6
Solyc08g075290.2 Solanum lycopersicum HOM05D005907 ORTHO05D007033 7.9e-31 137.9 171 42.7
Rhsim11G0037900 Rhododendron simsii HOM05D005907 ORTHO05D007033 1.0e-30 137.5 173 41.6
Sopen08g023890 Solanum pennellii HOM05D005907 ORTHO05D007033 1.4e-30 137.1 171 42.7
Hund14310 Selenicereus undatus HOM05D005907 ORTHO05D007033 2.3e-30 136.3 166 42.8
TPR.G8986 Trifolium pratense HOM05D005907 ORTHO05D007033 2.3e-30 136.3 175 40.6
PGR031G0343 Punica granatum HOM05D005907 ORTHO05D007033 3.0e-30 136.0 157 43.9
AL7G34790 Arabidopsis lyrata HOM05D005907 ORTHO05D007033 3.9e-30 135.6 146 48.6
AT4G19370 Arabidopsis thaliana HOM05D005907 ORTHO05D007033 3.9e-30 135.6 164 45.1
Manes.17G003749 Manihot esculenta HOM05D005907 ORTHO05D007033 3.9e-30 135.6 176 40.9
Nitab4.5_0000986g0090 Nicotiana tabacum HOM05D005907 ORTHO05D007033 3.9e-30 135.6 165 41.8
Potri.004G235000 Populus trichocarpa HOM05D005907 ORTHO05D007033 3.9e-30 135.6 172 43.6
THA.LOC104806200 Tarenaya hassleriana HOM05D005907 ORTHO05D007033 3.9e-30 135.6 155 47.7
CSS0017808 Camellia sinensis var. sinensis HOM05D005907 ORTHO05D007033 5.2e-30 135.2 173 41.6
Medtr8g072220 Medicago truncatula HOM05D005907 ORTHO05D007033 5.2e-30 135.2 174 41.4
TWI60G0533 Tripterygium wilfordii HOM05D005907 ORTHO05D007033 5.2e-30 135.2 178 42.7
VMungo1215G2629 Vigna mungo HOM05D001324 ORTHO05D001220 5.2e-30 135.2 178 38.2
GSVIVG01036890001 Vitis vinifera HOM05D005907 ORTHO05D007033 5.2e-30 135.2 166 43.4
Carub.0007s2186 Capsella rubella HOM05D005907 ORTHO05D007033 6.7e-30 134.8 163 45.4
CARHR226160 Cardamine hirsuta HOM05D005907 ORTHO05D007033 6.7e-30 134.8 148 46.6
Sed0007709 Sechium edule HOM05D005907 ORTHO05D007033 8.8e-30 134.4 168 38.7
Duzib068G0478 Durio zibethinus HOM05D005907 ORTHO05D007033 1.1e-29 134.0 174 44.3
Aa31LG6G1970 Aethionema arabicum HOM05D005907 ORTHO05D007033 1.5e-29 133.7 150 44.7
BcaC09g51418 Brassica carinata HOM05D005907 ORTHO05D007033 1.5e-29 133.7 163 46.0
C01p13330 Brassica napus HOM05D005907 ORTHO05D007033 1.5e-29 133.7 163 46.0
BolC1t01308H Brassica oleracea HOM05D005907 ORTHO05D007033 1.5e-29 133.7 163 46.0
Eucgr.E01152 Eucalyptus grandis HOM05D005907 ORTHO05D007033 1.5e-29 133.7 160 44.4
Gorai.008G218600 Gossypium raimondii HOM05D005907 ORTHO05D007033 1.5e-29 133.7 174 43.1
A01p11320 Brassica napus HOM05D005907 ORTHO05D007033 2.0e-29 133.3 163 46.0
BraA01t01076Z Brassica rapa HOM05D005907 ORTHO05D007033 2.0e-29 133.3 163 46.0
SalBow4G0438 Salvia bowleyana HOM05D005907 ORTHO05D007033 2.6e-29 132.9 136 47.8
Thhalv10026210m.g Eutrema salsugineum HOM05D005907 ORTHO05D007033 3.3e-29 132.5 150 47.3
Glyma.16G076400 Glycine max HOM05D005907 ORTHO05D007033 3.3e-29 132.5 177 42.9
TAR629G0350 Trochodendron aralioides HOM05D005907 ORTHO05D007033 3.3e-29 132.5 159 44.7
Medtr5g025640 Medicago truncatula HOM05D005907 ORTHO05D007033 4.4e-29 132.1 165 42.4
SalBow8G0159 Salvia bowleyana HOM05D005907 ORTHO05D007033 5.7e-29 131.7 157 44.6
Gohir.D12G203800 Gossypium hirsutum HOM05D005907 ORTHO05D007033 7.4e-29 131.3 174 42.5
Sp4g03880 Schrenkiella parvula HOM05D005907 ORTHO05D007033 7.4e-29 131.3 159 46.5
Sp7g17980 Schrenkiella parvula HOM05D005907 ORTHO05D007033 9.7e-29 131.0 164 43.9
Phvul.002G122500 Phaseolus vulgaris HOM05D005907 ORTHO05D007033 1.7e-28 130.2 162 40.1
BcaNung01784 Brassica carinata HOM05D005907 ORTHO05D007033 2.2e-28 129.8 150 45.3
FAN04G3107 Fragaria x ananassa HOM05D005907 ORTHO05D007033 2.8e-28 129.4 164 43.9
PSO339G2078 Papaver somniferum HOM05D005907 ORTHO05D007033 2.8e-28 129.4 156 42.9
RcHm_v2.0_Chr7g0215261 Rosa chinensis HOM05D005907 ORTHO05D007033 2.8e-28 129.4 152 44.1
CAN.G998.7 Capsicum annuum HOM05D005907 ORTHO05D007033 4.8e-28 128.6 171 40.4
CANSAT35G1964 Cannabis sativa HOM05D005907 ORTHO05D007033 6.3e-28 128.3 142 48.6
Cc08_g05990 Coffea canephora HOM05D005907 ORTHO05D007033 6.3e-28 128.3 171 37.4
MSTRG.25750 Avicennia marina HOM05D005907 ORTHO05D007033 8.2e-28 127.9 155 42.6
Psat2g145040 Pisum sativum HOM05D005907 ORTHO05D007033 8.2e-28 127.9 171 39.8
ATR0568G210 Amborella trichopoda HOM05D005907 ORTHO05D007033 1.4e-27 127.1 155 45.2
Gorai.004G176900 Gossypium raimondii HOM05D005907 ORTHO05D007033 1.8e-27 126.7 166 42.2
Gohir.A08G148600 Gossypium hirsutum HOM05D005907 ORTHO05D007033 5.3e-27 125.2 164 43.3
Sed0019955 Sechium edule HOM05D005907 ORTHO05D007033 5.3e-27 125.2 150 44.7
Nn3g19120 Nelumbo nucifera HOM05D005907 ORTHO05D007033 9.1e-27 124.4 166 42.8
CsaV3_4G007120 Cucumis sativus L. HOM05D005907 ORTHO05D007033 1.6e-26 123.6 173 37.0
Prupe.5G013600 Prunus persica HOM05D005907 ORTHO05D007033 2.0e-26 123.2 181 35.9
FvH4_5g24980 Fragaria vesca HOM05D005907 ORTHO05D007033 2.6e-26 122.9 143 44.8
FAN18G3850 Fragaria x ananassa HOM05D005907 ORTHO05D007033 2.6e-26 122.9 143 44.8
Manes.15G184500 Manihot esculenta HOM05D005907 ORTHO05D007033 2.6e-26 122.9 144 41.0
Gohir.D08G169700 Gossypium hirsutum HOM05D005907 ORTHO05D007033 5.9e-26 121.7 166 42.2
FAN08G1334 Fragaria x ananassa HOM05D005907 ORTHO05D007033 7.7e-26 121.3 152 42.1
ClCG07G011130 Citrullus lanatus HOM05D005907 ORTHO05D007033 1.3e-25 120.6 156 39.7
Gohir.A12G201000 Gossypium hirsutum HOM05D005907 ORTHO05D007033 2.2e-25 119.8 175 41.7
SGA_v2.0_scaffold121G33056 Striga asiatica HOM05D005907 ORTHO05D007033 3.8e-25 119.0 175 40.6
ECA233G3754 Erigeron canadensis HOM05D005907 ORTHO05D007033 6.5e-25 118.2 143 45.5
Nn1g09337 Nelumbo nucifera HOM05D005907 ORTHO05D007033 6.5e-25 118.2 153 42.5
Nitab4.5_0006244g0030 Nicotiana tabacum HOM05D005907 ORTHO05D007033 2.5e-24 116.3 164 39.0
PGR042G1103 Punica granatum HOM05D005907 ORTHO05D007033 3.2e-24 115.9 162 42.0
MD06G1011300 Malus domestica HOM05D005907 ORTHO05D007033 4.2e-24 115.5 166 35.5
CDE01G0013 Ceratophyllum demersum HOM05D005907 ORTHO05D007033 1.6e-23 113.6 155 41.3
HanXRQChr08g0233691 Helianthus annuus HOM05D005907 ORTHO05D007033 2.7e-23 112.8 149 42.3
VMungo0251G3198 Vigna mungo HOM05D005907 ORTHO05D007033 3.0e-22 109.4 176 36.4
Sc07g0008040 Simmondsia chinensis HOM05D005907 ORTHO05D007033 6.7e-22 108.2 108 49.1
Phvul.003G278300 Phaseolus vulgaris HOM05D005907 ORTHO05D007033 7.5e-21 104.8 143 39.2
Cpa.g.c30909 Carica papaya HOM05D005907 ORTHO05D007033 1.3e-20 104.0 136 44.9
Os02g0703300 Oryza sativa ssp. japonica HOM05D005907 ORTHO05D007033 2.2e-20 103.2 133 40.6
unitig_37.g12906 Utricularia gibba HOM05D005907 ORTHO05D007033 3.1e-19 99.4 156 38.5
Zm00001eb251950 Zea mays HOM05D005907 ORTHO05D007033 9.1e-19 97.8 125 42.4
Dinv37434 Davidia involucrata HOM05D005907 ORTHO05D007033 4.5e-18 95.5 124 41.9
Sed0021253 Sechium edule HOM05D005907 ORTHO05D007033 1.0e-17 94.4 110 41.8
EL10Ac5g12591 Beta vulgaris HOM05D005907 ORTHO05D007033 1.7e-17 93.6 178 34.3
SEGI_15207 Sequoiadendron giganteum HOM05D002819 ORTHO05D003207 8.5e-17 91.3 144 34.7
SEGI_02785 Sequoiadendron giganteum HOM05D002819 ORTHO05D003207 1.6e-15 87.0 146 35.6
Peaxi162Scf00550g00429 Petunia axillaris HOM05D005907 ORTHO05D007033 2.7e-15 86.3 66 57.6
Haze_08421 Corylus avellana HOM05D005907 ORTHO05D007033 2.0e-13 80.1 97 43.3
Psat4g109120 Pisum sativum HOM05D005907 ORTHO05D007033 5.7e-13 78.6 109 36.7
Aqoxy2G03476 Aquilegia oxysepala HOM05D005907 ORTHO05D007033 3.7e-12 75.9 109 38.5
Nitab4.5_0009213g0030 Nicotiana tabacum HOM05D005907 ORTHO05D007033 4.8e-12 75.5 175 28.6
SEGI_02210 Sequoiadendron giganteum HOM05D002819 ORTHO05D003207 3.1e-11 72.8 142 28.9
Nitab4.5_0000021g0320 Nicotiana tabacum HOM05D002819 ORTHO05D003207 9.1e-11 71.2 152 32.9
Actinidia28266 Actinidia chinensis HOM05D002819 ORTHO05D003207 4.5e-10 68.9 137 34.3
CSS0046349 Camellia sinensis var. sinensis HOM05D002819 ORTHO05D003207 4.5e-10 68.9 161 32.9
ClCG11G016120 Citrullus lanatus HOM05D005907 ORTHO05D007033 7.7e-10 68.2 98 40.8
Actinidia18697 Actinidia chinensis HOM05D002819 ORTHO05D003207 1.3e-09 67.4 158 32.3
arahy.Tifrunner.gnm1.ann1.UI3LS8 Arachis hypogaea HOM05D005907 ORTHO05D007033 1.3e-09 67.4 98 40.8
Haze_08422 Corylus avellana HOM05D005907 ORTHO05D007033 1.7e-09 67.0 76 43.4
arahy.Tifrunner.gnm1.ann1.VB8HUC Arachis hypogaea HOM05D005907 ORTHO05D007033 1.1e-08 64.3 96 38.5
MELO3C016217.2 Cucumis melo HOM05D005907 ORTHO05D007033 1.1e-08 64.3 61 47.5
SEGI_27585 Sequoiadendron giganteum HOM05D002819 ORTHO05D003207 1.5e-08 63.9 142 30.3
CSS0022427 Camellia sinensis var. sinensis HOM05D002819 ORTHO05D003207 1.9e-08 63.5 145 33.1
CAN.G303.71 Capsicum annuum HOM05D002819 ORTHO05D003207 1.9e-08 63.5 173 31.8
SGA_v2.0_scaffold50G18432 Striga asiatica HOM05D002819 ORTHO05D003207 1.9e-08 63.5 137 32.1
DCAR_020399 Daucus carota HOM05D002819 ORTHO05D003207 2.5e-08 63.2 147 32.0
Nitab4.5_0005081g0090 Nicotiana tabacum HOM05D002819 ORTHO05D003207 3.2e-08 62.8 112 35.7
Sabra13G0071600 Salix brachista HOM05D002819 ORTHO05D003207 3.2e-08 62.8 140 30.7
Potri.019G048300 Populus trichocarpa HOM05D002819 ORTHO05D003207 4.2e-08 62.4 141 30.5
Peaxi162Scf00133g00916 Petunia axillaris HOM05D002819 ORTHO05D003207 5.5e-08 62.0 138 30.4
TPR.G27702 Trifolium pratense HOM05D005143 ORTHO05D006404 5.5e-08 62.0 184 30.4
SMO201G0204 Selaginella moellendorffii HOM05D002819 ORTHO05D003207 9.5e-08 61.2 146 28.1
vmacro10181 Vaccinium macrocarpon HOM05D002819 ORTHO05D003207 9.5e-08 61.2 143 32.2
arahy.Tifrunner.gnm1.ann1.93DHY7 Arachis hypogaea HOM05D005907 ORTHO05D007033 1.6e-07 60.5 57 45.6
Cc02_g00430 Coffea canephora HOM05D002819 ORTHO05D003207 1.6e-07 60.5 138 30.4
MD07G1305500 Malus domestica HOM05D002819 ORTHO05D003207 3.6e-07 59.3 144 31.2
Rhsim03G0220200 Rhododendron simsii HOM05D002819 ORTHO05D003207 3.6e-07 59.3 154 26.0
PGSC0003DMG400000568 Solanum tuberosum HOM05D002819 ORTHO05D003207 3.6e-07 59.3 148 31.8
Nitab4.5_0000943g0070 Nicotiana tabacum HOM05D005907 ORTHO05D007033 4.7e-07 58.9 95 30.5
Lsat_1_v5_gn_6_17141 Lactuca sativa HOM05D005907 ORTHO05D007033 6.1e-07 58.5 75 40.0
PGSC0003DMG400001952 Solanum tuberosum HOM05D005907 ORTHO05D007033 6.1e-07 58.5 65 40.0
Duzib177G0623 Durio zibethinus HOM05D002819 ORTHO05D003207 8.0e-07 58.2 159 28.9
CiPaw.10G066500 Carya illinoinensis HOM05D001850 ORTHO05D002241 1.0e-06 57.8 172 27.9
arahy.Tifrunner.gnm1.ann1.T5MZ8J Arachis hypogaea HOM05D002819 ORTHO05D003207 1.4e-06 57.4 145 30.3
MD10G1311300 Malus domestica HOM05D001850 ORTHO05D002241 1.4e-06 57.4 136 32.4
Sopen03g027610 Solanum pennellii HOM05D002819 ORTHO05D003207 1.4e-06 57.4 147 29.9
Zm00001eb378900 Zea mays HOM05D002819 ORTHO05D003207 1.4e-06 57.4 137 28.5
Sc19g0001530 Simmondsia chinensis HOM05D002819 ORTHO05D003207 1.8e-06 57.0 143 26.6
Solyc03g096860.3 Solanum lycopersicum HOM05D002819 ORTHO05D003207 1.8e-06 57.0 147 29.9
TWI34G1962 Tripterygium wilfordii HOM05D002819 ORTHO05D003207 2.3e-06 56.6 142 29.6
Sed0019983 Sechium edule HOM05D002819 ORTHO05D003207 3.0e-06 56.2 131 35.1
SEGI_18520 Sequoiadendron giganteum HOM05D002819 ORTHO05D003207 3.0e-06 56.2 165 28.5
arahy.Tifrunner.gnm1.ann1.ZD4NBX Arachis hypogaea HOM05D002819 ORTHO05D003207 4.0e-06 55.8 145 30.3
FvH4_3g02950 Fragaria vesca HOM05D001850 ORTHO05D002241 4.0e-06 55.8 138 29.0
MD01G1233300 Malus domestica HOM05D002819 ORTHO05D003207 4.0e-06 55.8 143 30.8
Prupe.4G029600 Prunus persica HOM05D001850 ORTHO05D002241 4.0e-06 55.8 136 32.4
PGR042G2293 Punica granatum HOM05D001850 ORTHO05D002241 4.0e-06 55.8 166 31.9
TAR374G1715 Trochodendron aralioides HOM05D002819 ORTHO05D003207 4.0e-06 55.8 141 29.1
Duzib106G1872 Durio zibethinus HOM05D002819 ORTHO05D003207 5.2e-06 55.5 163 28.2
FAN03G3363 Fragaria x ananassa HOM05D002819 ORTHO05D003207 5.2e-06 55.5 126 29.4
QL09p025978 Quercus lobata HOM05D002819 ORTHO05D003207 6.8e-06 55.1 145 24.1
Lj6g0008162 Lotus japonicus HOM05D001850 ORTHO05D002241 8.8e-06 54.7 138 28.3
Os06g0114700 Oryza sativa ssp. japonica HOM05D002819 ORTHO05D003207 8.8e-06 54.7 136 27.9
Rhsim03G0220400 Rhododendron simsii HOM05D002819 ORTHO05D003207 8.8e-06 54.7 153 30.1
SalBow2G3364 Salvia bowleyana HOM05D002819 ORTHO05D003207 8.8e-06 54.7 172 29.7


User provided reference genes

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