Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G44500 Arabidopsis lyrata HOM05D004577 ORTHO05D005062 7.9e-78 293.9 168 100.0
AT1G30475 Arabidopsis thaliana HOM05D004577 ORTHO05D005062 1.6e-59 233.0 168 87.5
Carub.0001s2869 Capsella rubella HOM05D004577 ORTHO05D005062 5.3e-50 201.4 168 76.8
Thhalv10008915m.g Eutrema salsugineum HOM05D004577 ORTHO05D005062 5.3e-50 201.4 175 74.3
Sp1g26310 Schrenkiella parvula HOM05D004577 ORTHO05D005062 2.5e-47 192.6 175 69.7
CARHR029880 Cardamine hirsuta HOM05D004577 ORTHO05D005062 3.0e-45 185.7 174 71.3
BcaC01g00196 Brassica carinata HOM05D004577 ORTHO05D005062 2.6e-44 182.6 174 68.4
C03p76790 Brassica napus HOM05D004577 ORTHO05D005062 3.3e-44 182.2 173 66.5
A07p09910 Brassica napus HOM05D004577 ORTHO05D005062 9.7e-44 180.6 171 67.3
BolC3t19933H Brassica oleracea HOM05D004577 ORTHO05D005062 1.7e-43 179.9 174 66.7
A08p24420 Brassica napus HOM05D004577 ORTHO05D005062 2.2e-43 179.5 173 65.9
BraA08t34397Z Brassica rapa HOM05D004577 ORTHO05D005062 2.2e-43 179.5 173 65.9
BcaNung05263 Brassica carinata HOM05D004577 ORTHO05D005062 5.3e-42 174.9 174 66.1
BolC7t42015H Brassica oleracea HOM05D004577 ORTHO05D005062 7.0e-42 174.5 175 66.9
C07p15110 Brassica napus HOM05D004577 ORTHO05D005062 1.0e-40 170.6 177 65.5
BcaB03g13825 Brassica carinata HOM05D004577 ORTHO05D005062 1.5e-39 166.8 173 65.3
BraA07t28780Z Brassica rapa HOM05D004577 ORTHO05D005062 1.6e-38 163.3 175 63.4
THA.LOC104798603 Tarenaya hassleriana HOM05D004577 ORTHO05D005062 3.2e-31 139.0 168 60.7
Aa31LG6G11730 Aethionema arabicum HOM05D004577 ORTHO05D005062 4.7e-22 108.6 172 52.9
Thhalv10011850m.g Eutrema salsugineum HOM05D004577 ORTHO05D005062 6.1e-22 108.2 104 70.2
AT1G56200 Arabidopsis thaliana HOM05D004577 ORTHO05D005062 4.0e-21 105.5 117 61.5
BraA05t20207Z Brassica rapa HOM05D004577 ORTHO05D005062 6.8e-21 104.8 142 58.5
AL1G64510 Arabidopsis lyrata HOM05D004577 ORTHO05D005062 8.8e-21 104.4 93 71.0
BolC4t23212H Brassica oleracea HOM05D004577 ORTHO05D005062 8.8e-21 104.4 118 63.6
A05p12690 Brassica napus HOM05D004577 ORTHO05D005062 1.2e-20 104.0 95 73.7
C04p16620 Brassica napus HOM05D004577 ORTHO05D005062 1.2e-20 104.0 95 73.7
Carub.0001s4488 Capsella rubella HOM05D004577 ORTHO05D005062 1.5e-20 103.6 130 58.5
CARHR045970 Cardamine hirsuta HOM05D004577 ORTHO05D005062 3.4e-20 102.4 118 62.7
BcaB02g10507 Brassica carinata HOM05D004577 ORTHO05D005062 7.5e-20 101.3 118 61.9
Sp1g41840 Schrenkiella parvula HOM05D004577 ORTHO05D005062 6.3e-19 98.2 116 62.1
THA.LOC104826365 Tarenaya hassleriana HOM05D004577 ORTHO05D005062 5.4e-18 95.1 88 73.9
Gohir.D09G118900 Gossypium hirsutum HOM05D004577 ORTHO05D005062 1.2e-17 94.0 110 62.7
Thecc.07G153300 Theobroma cacao HOM05D004577 ORTHO05D005062 1.2e-17 94.0 107 63.6
Duzib187G1448 Durio zibethinus HOM05D004577 ORTHO05D005062 4.5e-17 92.0 96 62.5
Lsat_1_v5_gn_9_89100 Lactuca sativa HOM05D004577 ORTHO05D005062 1.3e-16 90.5 95 69.5
PGR004G1013 Punica granatum HOM05D004577 ORTHO05D005062 2.3e-16 89.7 112 58.9
Gohir.A01G038700 Gossypium hirsutum HOM05D004577 ORTHO05D005062 6.6e-16 88.2 110 60.9
Solyc04g051850.3 Solanum lycopersicum HOM05D004577 ORTHO05D005062 6.6e-16 88.2 95 69.5
Duzib213G0774 Durio zibethinus HOM05D004577 ORTHO05D005062 8.6e-16 87.8 97 62.9
Sopen04g023180 Solanum pennellii HOM05D004577 ORTHO05D005062 8.6e-16 87.8 95 69.5
PGSC0003DMG400016552 Solanum tuberosum HOM05D004577 ORTHO05D005062 8.6e-16 87.8 94 70.2
Peaxi162Scf00359g00123 Petunia axillaris HOM05D004577 ORTHO05D005062 1.1e-15 87.4 94 68.1
Sopen08g002020 Solanum pennellii HOM05D004577 ORTHO05D005062 5.6e-15 85.1 93 61.3
unitig_578.g16418 Utricularia gibba HOM05D004577 ORTHO05D005062 5.6e-15 85.1 128 53.9
unitig_8.g4693 Utricularia gibba HOM05D002703 ORTHO05D002921 5.6e-15 85.1 96 68.8
Ca_12454_v3 Cicer arietinum L. HOM05D004577 ORTHO05D005062 9.5e-15 84.3 87 69.0
DCAR_019165 Daucus carota HOM05D004577 ORTHO05D005062 1.2e-14 84.0 112 57.1
QL08p002692 Quercus lobata HOM05D004577 ORTHO05D005062 1.6e-14 83.6 165 45.5
Sed0027009 Sechium edule HOM05D004577 ORTHO05D005062 2.1e-14 83.2 109 61.5
Solyc08g006050.2 Solanum lycopersicum HOM05D004577 ORTHO05D005062 2.1e-14 83.2 93 63.4
CsaV3_3G003860 Cucumis sativus L. HOM05D004577 ORTHO05D005062 2.8e-14 82.8 110 60.0
Dinv40884 Davidia involucrata HOM05D002691 ORTHO05D003304 2.8e-14 82.8 102 61.8
ECA240G1529 Erigeron canadensis HOM05D000491 ORTHO05D000359 2.8e-14 82.8 139 55.4
Nitab4.5_0000904g0010 Nicotiana tabacum HOM05D004577 ORTHO05D005062 2.8e-14 82.8 94 66.0
Cc10_g02580 Coffea canephora HOM05D004577 ORTHO05D005062 3.6e-14 82.4 94 66.0
MELO3C014068.2 Cucumis melo HOM05D004577 ORTHO05D005062 3.6e-14 82.4 121 55.4
Eucgr.K00372 Eucalyptus grandis HOM05D004577 ORTHO05D005062 3.6e-14 82.4 98 63.3
MD03G1035300 Malus domestica HOM05D004577 ORTHO05D005062 4.7e-14 82.0 99 61.6
PGSC0003DMG400014846 Solanum tuberosum HOM05D004577 ORTHO05D005062 4.7e-14 82.0 94 67.0
MSTRG.14503 Avicennia marina HOM05D004577 ORTHO05D005062 6.1e-14 81.6 99 63.6
CSS0030856 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 6.1e-14 81.6 187 42.8
Migut.M01633 Erythranthe guttata HOM05D004577 ORTHO05D005062 6.1e-14 81.6 92 68.5
MSTRG.13031 Avicennia marina HOM05D004577 ORTHO05D005062 8.0e-14 81.3 157 49.0
CiPaw.11G206900 Carya illinoinensis HOM05D004577 ORTHO05D005062 8.0e-14 81.3 86 72.1
CiPaw.12G140600 Carya illinoinensis HOM05D004577 ORTHO05D005062 8.0e-14 81.3 95 66.3
MD11G1037000 Malus domestica HOM05D004577 ORTHO05D005062 8.0e-14 81.3 86 66.3
ClCG10G003880 Citrullus lanatus HOM05D004577 ORTHO05D005062 1.0e-13 80.9 121 55.4
ClCG10G004020 Citrullus lanatus HOM05D004577 ORTHO05D005062 1.0e-13 80.9 121 55.4
ClCG10G004040 Citrullus lanatus HOM05D004577 ORTHO05D005062 1.0e-13 80.9 176 44.3
Nitab4.5_0005865g0040 Nicotiana tabacum HOM05D004577 ORTHO05D005062 1.0e-13 80.9 94 64.9
TWI38G1007 Tripterygium wilfordii HOM05D004577 ORTHO05D005062 1.0e-13 80.9 126 54.0
arahy.Tifrunner.gnm1.ann1.DGYJ7N Arachis hypogaea HOM05D004577 ORTHO05D005062 1.8e-13 80.1 166 47.0
Cfa021890 Carpinus fangiana HOM05D004577 ORTHO05D005062 1.8e-13 80.1 103 61.2
Glyma.18G074400 Glycine max HOM05D004577 ORTHO05D005062 1.8e-13 80.1 86 74.4
Haze_09864 Corylus avellana HOM05D004577 ORTHO05D005062 2.3e-13 79.7 86 70.9
Nn1g08321 Nelumbo nucifera HOM05D004577 ORTHO05D005062 2.3e-13 79.7 95 61.1
Psat5g166440 Pisum sativum HOM05D004577 ORTHO05D005062 2.3e-13 79.7 88 68.2
VMungo0540G1151 Vigna mungo HOM05D004577 ORTHO05D005062 2.3e-13 79.7 86 72.1
CSS0013049 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 3.0e-13 79.3 130 54.6
DCAR_015198 Daucus carota HOM05D004577 ORTHO05D005062 3.0e-13 79.3 128 53.1
FAN21G3744 Fragaria x ananassa HOM05D004577 ORTHO05D005062 3.0e-13 79.3 124 52.4
MBI15_g38535_MAGBIO Magnolia biondii HOM05D004577 ORTHO05D005062 3.0e-13 79.3 118 57.6
RcHm_v2.0_Chr5g0075591 Rosa chinensis HOM05D004577 ORTHO05D005062 3.0e-13 79.3 124 53.2
TAR627G0729 Trochodendron aralioides HOM05D004577 ORTHO05D005062 4.0e-13 79.0 86 69.8
FvH4_3g42270 Fragaria vesca HOM05D004577 ORTHO05D005062 5.2e-13 78.6 106 56.6
Glyma.08G332600 Glycine max HOM05D004577 ORTHO05D005062 5.2e-13 78.6 84 75.0
Oeu021394.1 Olea europaea HOM05D004577 ORTHO05D005062 5.2e-13 78.6 137 49.6
Ciclev10009709m.g Citrus clementina HOM05D004577 ORTHO05D005062 8.9e-13 77.8 167 46.7
Phvul.006G059254 Phaseolus vulgaris HOM05D004577 ORTHO05D005062 8.9e-13 77.8 145 52.4
arahy.Tifrunner.gnm1.ann1.JWFX0I Arachis hypogaea HOM05D004577 ORTHO05D005062 1.2e-12 77.4 139 51.1
CSS0048553 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 1.2e-12 77.4 135 50.4
CSS0050514 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 1.2e-12 77.4 122 57.4
Eucgr.E00269 Eucalyptus grandis HOM05D004577 ORTHO05D005062 1.2e-12 77.4 58 63.8
FAN25G2651 Fragaria x ananassa HOM05D004577 ORTHO05D005062 1.2e-12 77.4 130 50.8
Prupe.6G028300 Prunus persica HOM05D004577 ORTHO05D005062 1.5e-12 77.0 97 59.8
FAN16G3679 Fragaria x ananassa HOM05D004577 ORTHO05D005062 2.0e-12 76.6 86 65.1
Lj6g0018119 Lotus japonicus HOM05D004577 ORTHO05D005062 2.0e-12 76.6 92 66.3
HanXRQChr13g0408461 Helianthus annuus HOM05D004577 ORTHO05D005062 3.4e-12 75.9 92 68.5
Lalb_Chr16g0391221 Lupinus albus HOM05D004577 ORTHO05D005062 3.4e-12 75.9 95 62.1
Manes.01G021500 Manihot esculenta HOM05D004577 ORTHO05D005062 3.4e-12 75.9 134 50.0
Medtr3g461020 Medicago truncatula HOM05D004577 ORTHO05D005062 3.4e-12 75.9 144 50.0
SGA_v2.0_scaffold8G04425 Striga asiatica HOM05D004577 ORTHO05D005062 3.4e-12 75.9 93 64.5
TAR629G1725 Trochodendron aralioides HOM05D004577 ORTHO05D005062 3.4e-12 75.9 103 58.3
HPP92_011618 Vanilla planifolia HOM05D004577 ORTHO05D005062 3.4e-12 75.9 83 66.3
Migut.H01738 Erythranthe guttata HOM05D004577 ORTHO05D005062 1.3e-11 73.9 90 67.8
HanXRQChr03g0080381 Helianthus annuus HOM05D004577 ORTHO05D005062 1.3e-11 73.9 92 66.3
Sc22g0002120 Simmondsia chinensis HOM05D004577 ORTHO05D005062 1.7e-11 73.6 145 48.3
GSVIVG01014742001 Vitis vinifera HOM05D004577 ORTHO05D005062 2.2e-11 73.2 48 72.9
unitig_0.g986 Utricularia gibba HOM05D004577 ORTHO05D005062 2.9e-11 72.8 102 57.8
PSO541G2111 Papaver somniferum HOM05D004577 ORTHO05D005062 8.3e-11 71.2 84 67.9
PSO675G7851 Papaver somniferum HOM05D004577 ORTHO05D005062 8.3e-11 71.2 84 67.9
ATR0681G062 Amborella trichopoda HOM05D004577 ORTHO05D005062 1.1e-10 70.9 85 62.4
FAN11G1489 Fragaria x ananassa HOM05D004577 ORTHO05D005062 1.1e-10 70.9 105 56.2
Potri.011G163900 Populus trichocarpa HOM05D004577 ORTHO05D005062 1.1e-10 70.9 103 57.3
CANSAT11G1943 Cannabis sativa HOM05D004577 ORTHO05D005062 2.4e-10 69.7 95 60.0
Hma1.2p1_3473F.1_g336250 Hydrangea macrophylla HOM05D004577 ORTHO05D005062 2.4e-10 69.7 80 63.8
HPP92_020499 Vanilla planifolia HOM05D004577 ORTHO05D005062 2.4e-10 69.7 101 59.4
CDE01G0461 Ceratophyllum demersum HOM05D004577 ORTHO05D005062 3.2e-10 69.3 84 67.9
Gorai.002G035900 Gossypium raimondii HOM05D004577 ORTHO05D005062 3.2e-10 69.3 109 52.3
Aqoxy5G01161 Aquilegia oxysepala HOM05D004577 ORTHO05D005062 4.1e-10 68.9 92 65.2
Gohir.A04G049900 Gossypium hirsutum HOM05D004577 ORTHO05D005062 4.1e-10 68.9 86 46.5
CDE02G2114 Ceratophyllum demersum HOM05D000091 ORTHO05D002116 7.0e-10 68.2 86 62.8
TWI39G1131 Tripterygium wilfordii HOM05D004577 ORTHO05D005062 7.0e-10 68.2 88 58.0
Manes.05G118000 Manihot esculenta HOM05D004577 ORTHO05D005062 1.2e-09 67.4 139 50.4
TPR.G17935 Trifolium pratense HOM05D004577 ORTHO05D005062 1.2e-09 67.4 96 49.0
EL10Ac7g17857 Beta vulgaris HOM05D004577 ORTHO05D005062 2.0e-09 66.6 97 59.8
MBI07_g28243_MAGBIO Magnolia biondii HOM05D004577 ORTHO05D005062 3.5e-09 65.9 110 48.2
Atru.chr2.3835 Acer truncatum HOM05D004577 ORTHO05D005062 4.6e-09 65.5 163 41.7
Nitab4.5_0000329g0070 Nicotiana tabacum HOM05D004577 ORTHO05D005062 4.6e-09 65.5 112 51.8
QL08p055193 Quercus lobata HOM05D004577 ORTHO05D005062 5.9e-09 65.1 91 52.7
SalBow1G5164 Salvia bowleyana HOM05D004577 ORTHO05D005062 1.0e-08 64.3 128 50.8
EL10Ac2g03806 Beta vulgaris HOM05D004577 ORTHO05D005062 1.7e-08 63.5 87 64.4
Hma1.2p1_0193F.1_g083910 Hydrangea macrophylla HOM05D004577 ORTHO05D005062 3.0e-08 62.8 81 66.7
Haze_16864 Corylus avellana HOM05D004577 ORTHO05D005062 3.9e-08 62.4 90 61.1
Cfa001670 Carpinus fangiana HOM05D004577 ORTHO05D005062 6.6e-08 61.6 90 62.2
Potri.001G371500 Populus trichocarpa HOM05D004577 ORTHO05D005062 2.5e-07 59.7 141 43.3
Aa31LG10G60 Aethionema arabicum HOM05D004577 ORTHO05D005062 3.3e-07 59.3 38 71.1
CiPaw.01G270900 Carya illinoinensis HOM05D004577 ORTHO05D005062 1.6e-06 57.0 140 45.7
Aa31LG10G50 Aethionema arabicum HOM05D004577 ORTHO05D005062 2.8e-06 56.2 56 71.4
Mapoly0031s0147 Marchantia polymorpha HOM05D034204 ORTHO05D005062 3.6e-06 55.8 85 58.8
Rhsim06G0184100 Rhododendron simsii HOM05D041616 ORTHO05D005062 3.6e-06 55.8 138 45.7
Dinv26646 Davidia involucrata HOM05D004577 ORTHO05D005062 6.2e-06 55.1 79 55.7
Mapoly0050s0087 Marchantia polymorpha HOM05D034204 ORTHO05D005062 6.2e-06 55.1 107 49.5
TPR.G2686 Trifolium pratense HOM05D011393 ORTHO05D013493 6.2e-06 55.1 144 39.6
vmacro12024 Vaccinium macrocarpon HOM05D041616 ORTHO05D005062 6.2e-06 55.1 76 64.5


User provided reference genes

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