Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G43960 Arabidopsis lyrata HOM05D005618 ORTHO05D007278 1.9e-119 432.6 222 100.0
AT1G30070 Arabidopsis thaliana HOM05D005618 ORTHO05D007278 5.5e-111 404.4 223 93.7
Carub.0001s2829 Capsella rubella HOM05D005618 ORTHO05D007278 3.3e-108 395.2 222 91.0
Sp1g25930 Schrenkiella parvula HOM05D005618 ORTHO05D007278 1.3e-107 393.3 222 89.6
Thhalv10008455m.g Eutrema salsugineum HOM05D005618 ORTHO05D007278 6.3e-107 391.0 222 89.6
CARHR029340 Cardamine hirsuta HOM05D005618 ORTHO05D007278 5.9e-105 384.4 222 89.6
A09p36460 Brassica napus HOM05D005618 ORTHO05D007278 2.2e-104 382.5 222 87.8
BraA09t39168Z Brassica rapa HOM05D005618 ORTHO05D007278 2.2e-104 382.5 222 87.8
BcaC05g27023 Brassica carinata HOM05D005618 ORTHO05D007278 5.0e-104 381.3 222 86.5
BcaB07g32606 Brassica carinata HOM05D005618 ORTHO05D007278 1.1e-103 380.2 222 86.9
C05p28860 Brassica napus HOM05D005618 ORTHO05D007278 4.2e-103 378.3 221 86.0
BolC5t31605H Brassica oleracea HOM05D005618 ORTHO05D007278 4.2e-103 378.3 221 86.0
Aa31LG6G5600 Aethionema arabicum HOM05D005618 ORTHO05D007278 2.9e-96 355.5 236 78.8
THA.LOC104814300 Tarenaya hassleriana HOM05D005618 ORTHO05D007278 1.2e-89 333.6 222 72.1
THA.LOC104820649 Tarenaya hassleriana HOM05D005618 ORTHO05D007278 8.5e-88 327.4 222 72.5
TWI53G0952 Tripterygium wilfordii HOM05D005618 ORTHO05D007278 6.1e-86 321.2 221 70.1
Thecc.06G150300 Theobroma cacao HOM05D005618 ORTHO05D007278 1.4e-85 320.1 222 68.9
Manes.15G121800 Manihot esculenta HOM05D005618 ORTHO05D007278 6.7e-85 317.8 221 68.8
FAN25G1374 Fragaria x ananassa HOM05D005618 ORTHO05D007278 4.4e-84 315.1 220 70.0
Duzib192G0044 Durio zibethinus HOM05D005618 ORTHO05D007278 5.7e-84 314.7 222 68.9
Gohir.A10G041000 Gossypium hirsutum HOM05D005618 ORTHO05D007278 9.7e-84 313.9 222 67.6
FAN11G3487 Fragaria x ananassa HOM05D005618 ORTHO05D007278 1.3e-83 313.5 219 69.9
FvH4_3g05510 Fragaria vesca HOM05D005618 ORTHO05D007278 1.7e-83 313.2 219 69.4
Duzib235G0110 Durio zibethinus HOM05D005618 ORTHO05D007278 2.2e-83 312.8 221 68.3
Psat7g130040 Pisum sativum HOM05D005618 ORTHO05D007278 3.7e-83 312.0 218 69.3
PGR083G1302 Punica granatum HOM05D005618 ORTHO05D007278 6.3e-83 311.2 220 70.5
COL.COLO4_31069 Corchorus olitorius HOM05D005618 ORTHO05D007278 1.1e-82 310.5 221 67.0
FAN16G1298 Fragaria x ananassa HOM05D005618 ORTHO05D007278 1.1e-82 310.5 219 68.9
HanXRQChr15g0480861 Helianthus annuus HOM05D005618 ORTHO05D007278 2.4e-82 309.3 220 67.3
Dinv32254 Davidia involucrata HOM05D005618 ORTHO05D007278 5.3e-82 308.1 220 66.4
Gohir.D10G041800 Gossypium hirsutum HOM05D005618 ORTHO05D007278 5.3e-82 308.1 222 67.6
FAN21G3768 Fragaria x ananassa HOM05D005618 ORTHO05D007278 7.0e-82 307.8 219 68.5
Lalb_Chr09g0328651 Lupinus albus HOM05D005618 ORTHO05D007278 7.0e-82 307.8 219 68.9
Potri.011G085100 Populus trichocarpa HOM05D005618 ORTHO05D007278 9.1e-82 307.4 221 67.4
RcHm_v2.0_Chr5g0014231 Rosa chinensis HOM05D005618 ORTHO05D007278 9.1e-82 307.4 221 68.3
CANSAT35G0334 Cannabis sativa HOM05D005618 ORTHO05D007278 1.2e-81 307.0 224 67.9
Gorai.011G044400 Gossypium raimondii HOM05D005618 ORTHO05D007278 2.0e-81 306.2 225 66.7
QL05p057939 Quercus lobata HOM05D005618 ORTHO05D007278 2.0e-81 306.2 221 65.6
MSTRG.7487 Avicennia marina HOM05D005618 ORTHO05D007278 4.5e-81 305.1 223 66.4
CiPaw.09G123100 Carya illinoinensis HOM05D005618 ORTHO05D007278 7.7e-81 304.3 221 65.2
Sabra11G0068900 Salix brachista HOM05D005618 ORTHO05D007278 1.0e-80 303.9 221 66.5
Lalb_Chr05g0219641 Lupinus albus HOM05D005618 ORTHO05D007278 1.3e-80 303.5 219 66.7
Sabra11G0067000 Salix brachista HOM05D005618 ORTHO05D007278 2.9e-80 302.4 221 66.1
TAR624G0623 Trochodendron aralioides HOM05D005618 ORTHO05D007278 6.5e-80 301.2 220 65.9
arahy.Tifrunner.gnm1.ann1.R3FQ90 Arachis hypogaea HOM05D005618 ORTHO05D007278 8.5e-80 300.8 221 64.3
SalBow8G3565 Salvia bowleyana HOM05D005618 ORTHO05D007278 8.5e-80 300.8 224 66.5
arahy.Tifrunner.gnm1.ann1.LME4NB Arachis hypogaea HOM05D005618 ORTHO05D007278 1.1e-79 300.4 221 64.3
CDE02G0590 Ceratophyllum demersum HOM05D005618 ORTHO05D007278 1.1e-79 300.4 221 66.1
TAR626G0061 Trochodendron aralioides HOM05D005618 ORTHO05D007278 1.1e-79 300.4 220 65.9
PGSC0003DMG400012093 Solanum tuberosum HOM05D005618 ORTHO05D007278 1.9e-79 299.7 220 67.3
Manes.17G070300 Manihot esculenta HOM05D005618 ORTHO05D007278 2.5e-79 299.3 221 65.6
Cc00_g08440 Coffea canephora HOM05D005618 ORTHO05D007278 3.2e-79 298.9 220 65.9
Gohir.A05G148300 Gossypium hirsutum HOM05D005618 ORTHO05D007278 3.2e-79 298.9 222 63.5
TPR.G38285 Trifolium pratense HOM05D005618 ORTHO05D007278 4.2e-79 298.5 218 67.4
Glyma.07G220200 Glycine max HOM05D005618 ORTHO05D007278 7.2e-79 297.7 220 67.3
Nn4g26571 Nelumbo nucifera HOM05D005618 ORTHO05D007278 9.4e-79 297.4 220 66.8
MSTRG.16244 Avicennia marina HOM05D005618 ORTHO05D007278 1.2e-78 297.0 222 64.0
Glyma.20G018500 Glycine max HOM05D005618 ORTHO05D007278 1.6e-78 296.6 219 66.2
Phvul.002G096900 Phaseolus vulgaris HOM05D005618 ORTHO05D007278 1.6e-78 296.6 220 65.5
Sopen08g007080 Solanum pennellii HOM05D005618 ORTHO05D007278 2.1e-78 296.2 220 66.8
Solyc08g016670.3 Solanum lycopersicum HOM05D005618 ORTHO05D007278 2.7e-78 295.8 220 66.8
DCAR_003916 Daucus carota HOM05D005618 ORTHO05D007278 6.1e-78 294.7 220 64.1
GSVIVG01021471001 Vitis vinifera HOM05D005618 ORTHO05D007278 6.1e-78 294.7 221 64.7
Ca_18751_v3 Cicer arietinum L. HOM05D005618 ORTHO05D007278 8.0e-78 294.3 218 64.2
Nitab4.5_0006887g0020 Nicotiana tabacum HOM05D005618 ORTHO05D007278 8.0e-78 294.3 219 66.7
CDE06G1306 Ceratophyllum demersum HOM05D005618 ORTHO05D007278 1.0e-77 293.9 220 63.2
Hma1.2p1_0053F.1_g030930 Hydrangea macrophylla HOM05D005618 ORTHO05D007278 1.0e-77 293.9 220 64.5
CAN.G50.16 Capsicum annuum HOM05D005618 ORTHO05D007278 1.4e-77 293.5 218 65.6
Eucgr.D00295 Eucalyptus grandis HOM05D005618 ORTHO05D007278 1.4e-77 293.5 221 66.1
Lj4g0005080 Lotus japonicus HOM05D005618 ORTHO05D007278 1.4e-77 293.5 219 67.6
Lsat_1_v5_gn_7_28281 Lactuca sativa HOM05D005618 ORTHO05D007278 3.0e-77 292.4 224 63.8
Oeu052366.1 Olea europaea HOM05D005618 ORTHO05D007278 3.0e-77 292.4 234 62.4
Sed0020286 Sechium edule HOM05D005618 ORTHO05D007278 4.0e-77 292.0 220 65.5
SGA_v2.0_scaffold1G00178 Striga asiatica HOM05D005618 ORTHO05D007278 4.0e-77 292.0 224 62.5
CiPaw.10G091700 Carya illinoinensis HOM05D005618 ORTHO05D007278 5.2e-77 291.6 221 62.9
Cfa000939 Carpinus fangiana HOM05D005618 ORTHO05D007278 6.7e-77 291.2 246 60.2
Gorai.009G154900 Gossypium raimondii HOM05D005618 ORTHO05D007278 6.7e-77 291.2 222 62.2
Sc17g0004900 Simmondsia chinensis HOM05D005618 ORTHO05D007278 8.8e-77 290.8 222 64.0
Migut.M00907 Erythranthe guttata HOM05D005618 ORTHO05D007278 2.0e-76 289.7 218 65.1
SGA_v2.0_scaffold333G48991 Striga asiatica HOM05D005618 ORTHO05D007278 2.6e-76 289.3 219 62.1
VMungo0251G3758 Vigna mungo HOM05D005618 ORTHO05D007278 2.6e-76 289.3 219 64.8
Gohir.D05G150800 Gossypium hirsutum HOM05D005618 ORTHO05D007278 9.7e-76 287.3 225 60.4
Ciclev10016692m.g Citrus clementina HOM05D005618 ORTHO05D007278 1.7e-75 286.6 220 65.0
Hund21546 Selenicereus undatus HOM05D005618 ORTHO05D007278 4.8e-75 285.0 220 62.3
Lj2A305G54 Lonicera japonica HOM05D005618 ORTHO05D007278 1.8e-74 283.1 221 61.5
CsaV3_1G032420 Cucumis sativus L. HOM05D005618 ORTHO05D007278 2.4e-74 282.7 220 61.8
Oeu034148.1 Olea europaea HOM05D005618 ORTHO05D007278 2.4e-74 282.7 231 61.0
ClCG03G006840 Citrullus lanatus HOM05D005618 ORTHO05D007278 5.3e-74 281.6 223 63.7
ECA236G2996 Erigeron canadensis HOM05D005618 ORTHO05D007278 7.0e-74 281.2 223 61.4
Haze_05608 Corylus avellana HOM05D005618 ORTHO05D007278 2.7e-73 279.3 211 63.0
ATR0730G012 Amborella trichopoda HOM05D005618 ORTHO05D007278 2.2e-72 276.2 221 59.7
Os01g0757500 Oryza sativa ssp. japonica HOM05D005618 ORTHO05D007278 2.9e-72 275.8 227 59.0
PSO675G5881 Papaver somniferum HOM05D005618 ORTHO05D007278 2.9e-72 275.8 240 58.8
MELO3C002736.2 Cucumis melo HOM05D005618 ORTHO05D007278 1.1e-71 273.9 222 60.8
Aqoxy1G01706 Aquilegia oxysepala HOM05D005618 ORTHO05D007278 7.2e-71 271.2 225 60.0
MD05G1283600 Malus domestica HOM05D005618 ORTHO05D007278 7.2e-71 271.2 213 63.4
Zm00001eb370650 Zea mays HOM05D005618 ORTHO05D007278 7.2e-71 271.2 220 57.3
Peaxi162Scf01211g00117 Petunia axillaris HOM05D005618 ORTHO05D007278 9.4e-71 270.8 263 53.2
SEGI_02039 Sequoiadendron giganteum HOM05D005618 ORTHO05D007278 1.6e-70 270.0 220 57.7
AUR62030187 Chenopodium quinoa HOM05D005618 ORTHO05D007278 1.0e-69 267.3 220 60.0
HPP92_020290 Vanilla planifolia HOM05D005618 ORTHO05D007278 1.0e-69 267.3 222 59.0
vmacro10962 Vaccinium macrocarpon HOM05D005618 ORTHO05D007278 1.8e-69 266.5 255 55.7
AUR62002738 Chenopodium quinoa HOM05D005618 ORTHO05D007278 3.0e-69 265.8 220 58.6
Thhalv10002717m.g Eutrema salsugineum HOM05D005618 ORTHO05D007278 2.8e-67 259.2 134 92.5
CSS0012983 Camellia sinensis var. sinensis HOM05D005618 ORTHO05D007278 4.8e-67 258.5 152 75.0
Zm00001eb152680 Zea mays HOM05D005618 ORTHO05D007278 2.4e-66 256.1 220 55.9
MBI10_g30420_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 5.4e-66 255.0 218 56.4
Actinidia39574 Actinidia chinensis HOM05D005618 ORTHO05D007278 1.6e-65 253.4 158 72.2
Nitab4.5_0000420g0030 Nicotiana tabacum HOM05D005618 ORTHO05D007278 1.6e-65 253.4 221 59.7
Medtr4g084250 Medicago truncatula HOM05D005618 ORTHO05D007278 2.0e-65 253.1 218 57.8
Ah.09g232560 Amaranthus hybridus HOM05D005618 ORTHO05D007278 1.3e-64 250.4 249 53.8
Atru.chr10.1223 Acer truncatum HOM05D005618 ORTHO05D007278 4.2e-63 245.4 206 57.3
MD10G1261800 Malus domestica HOM05D005618 ORTHO05D007278 1.8e-61 240.0 213 57.3
Pp3c4_13920 Physcomitrium patens HOM05D005618 ORTHO05D007278 6.8e-61 238.0 219 56.2
Nn3g20783 Nelumbo nucifera HOM05D005618 ORTHO05D007278 1.1e-58 230.7 178 60.1
Mapoly0148s0015 Marchantia polymorpha HOM05D005618 ORTHO05D007278 2.9e-56 222.6 235 51.1
AUR62026670 Chenopodium quinoa HOM05D005618 ORTHO05D007278 1.5e-55 220.3 220 51.8
Rhsim02G0158200 Rhododendron simsii HOM05D005618 ORTHO05D007278 2.8e-54 216.1 191 56.0
AagrBONN_evm.TU.Sc2ySwM_344.1819 Anthoceros agrestis HOM05D005618 ORTHO05D007278 4.7e-54 215.3 245 51.8
Cpa.g.c46789 Carica papaya HOM05D005618 ORTHO05D007278 8.3e-51 204.5 120 74.2
SMO364G0114 Selaginella moellendorffii HOM05D005618 ORTHO05D007278 1.7e-48 196.8 213 47.4
unitig_32.g11444 Utricularia gibba HOM05D005618 ORTHO05D007278 7.3e-47 191.4 111 75.7
Prupe.4G081000 Prunus persica HOM05D005618 ORTHO05D007278 1.4e-45 187.2 235 43.0
Actinidia07695 Actinidia chinensis HOM05D005618 ORTHO05D007278 3.1e-45 186.0 221 46.2
CBR_g22260 Chara braunii HOM05D005618 ORTHO05D007278 3.9e-40 169.1 251 39.4
AUR62040575 Chenopodium quinoa HOM05D005618 ORTHO05D007278 2.0e-36 156.8 156 47.4
MBI16_g34289_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 2.4e-34 149.8 100 63.0
SHI24907 Sapria himalayana HOM05D005618 ORTHO05D007278 4.6e-33 145.6 178 44.9
PSO541G3455 Papaver somniferum HOM05D005618 ORTHO05D007278 2.5e-23 113.2 243 34.2
MBI18_g05573_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 1.7e-11 73.9 41 80.5
SHI24908 Sapria himalayana HOM05D005618 ORTHO05D007278 7.1e-10 68.6 87 47.1
MBI18_g05572_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D006146 6.0e-09 65.5 43 67.4
Aqoxy7G01552 Aquilegia oxysepala HOM05D005618 ORTHO05D007278 6.7e-08 62.0 34 76.5
AT1G30060 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.5e-07 60.8 28 100.0
SMO353G0169 Selaginella moellendorffii HOM05D005618 ORTHO05D001361 1.5e-07 60.8 38 65.8
QL10p020720 Quercus lobata HOM05D005618 ORTHO05D337099 6.2e-06 55.5 49 61.2
QL10p031514 Quercus lobata HOM05D005618 ORTHO05D337805 6.2e-06 55.5 39 71.8
SMO364G0864 Selaginella moellendorffii HOM05D005618 ORTHO05D374196 8.1e-06 55.1 210 24.8


User provided reference genes

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