Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G43560 Arabidopsis lyrata HOM05D000054 ORTHO05D005077 2.6e-59 232.3 154 100.0
BcaB07g32557 Brassica carinata HOM05D000054 ORTHO05D000171 1.3e-10 70.5 47 68.1
BraA05t21243Z Brassica rapa HOM05D000054 ORTHO05D000171 3.8e-10 68.9 64 59.4
AL1G43550 Arabidopsis lyrata HOM05D000054 ORTHO05D000171 4.9e-10 68.6 37 83.8
BcaB03g13863 Brassica carinata HOM05D000054 ORTHO05D000171 4.9e-10 68.6 37 86.5
BcaC05g26988 Brassica carinata HOM05D000054 ORTHO05D000171 4.9e-10 68.6 37 86.5
C05p28490 Brassica napus HOM05D000054 ORTHO05D000171 4.9e-10 68.6 37 86.5
C07p15830 Brassica napus HOM05D000054 ORTHO05D000171 4.9e-10 68.6 49 69.4
BcaB03g12174 Brassica carinata HOM05D000054 ORTHO05D000171 6.4e-10 68.2 37 86.5
A05p23740 Brassica napus HOM05D000054 ORTHO05D000171 6.4e-10 68.2 44 72.7
A06p41360 Brassica napus HOM05D000054 ORTHO05D000171 6.4e-10 68.2 37 89.2
A07p10300 Brassica napus HOM05D000054 ORTHO05D000171 6.4e-10 68.2 40 80.0
A08p24900 Brassica napus HOM05D000054 ORTHO05D005077 6.4e-10 68.2 37 86.5
BraA06t27061Z Brassica rapa HOM05D000054 ORTHO05D000171 6.4e-10 68.2 37 89.2
BraA07t28830Z Brassica rapa HOM05D000054 ORTHO05D000171 6.4e-10 68.2 40 80.0
BraA08t34446Z Brassica rapa HOM05D000054 ORTHO05D005077 6.4e-10 68.2 37 86.5
BcaC06g35460 Brassica carinata HOM05D000054 ORTHO05D000171 8.4e-10 67.8 37 86.5
C07p15800 Brassica napus HOM05D000054 ORTHO05D000171 8.4e-10 67.8 37 86.5
C07p15880 Brassica napus HOM05D000054 ORTHO05D000171 8.4e-10 67.8 40 80.0
Thhalv10015261m.g Eutrema salsugineum HOM05D000054 ORTHO05D000171 1.1e-09 67.4 37 86.5
BcaC05g26987 Brassica carinata HOM05D000054 ORTHO05D000171 1.4e-09 67.0 37 81.1
A07p10310 Brassica napus HOM05D000054 ORTHO05D000171 1.4e-09 67.0 41 75.6
A09p36720 Brassica napus HOM05D000054 ORTHO05D000171 1.4e-09 67.0 37 83.8
C05p28470 Brassica napus HOM05D000054 ORTHO05D000171 1.4e-09 67.0 37 81.1
BolC5t31572H Brassica oleracea HOM05D000054 ORTHO05D000171 1.4e-09 67.0 37 81.1
BolC5t32468H Brassica oleracea HOM05D000054 ORTHO05D000171 1.9e-09 66.6 44 70.5
Carub.0001s2795 Capsella rubella HOM05D000054 ORTHO05D000171 1.9e-09 66.6 37 83.8
CARHR029070 Cardamine hirsuta HOM05D000054 ORTHO05D000171 1.9e-09 66.6 37 83.8
BcaC06g35453 Brassica carinata HOM05D000054 ORTHO05D000171 3.2e-09 65.9 37 86.5
A07p19780 Brassica napus HOM05D000054 ORTHO05D000171 3.2e-09 65.9 36 80.6
C06p18260 Brassica napus HOM05D000054 ORTHO05D006076 3.2e-09 65.9 36 80.6
C07p15860 Brassica napus HOM05D000054 ORTHO05D000171 3.2e-09 65.9 41 73.2
C07p15920 Brassica napus HOM05D000054 ORTHO05D000171 3.2e-09 65.9 37 86.5
BolC7t42079H Brassica oleracea HOM05D000054 ORTHO05D000171 3.2e-09 65.9 41 73.2
BolC7t42080H Brassica oleracea HOM05D000054 ORTHO05D000171 3.2e-09 65.9 37 86.5
BraA07t29679Z Brassica rapa HOM05D000054 ORTHO05D000171 3.2e-09 65.9 36 80.6
Sp1g25600 Schrenkiella parvula HOM05D000054 ORTHO05D000171 3.2e-09 65.9 37 81.1
A09p36740 Brassica napus HOM05D000054 ORTHO05D000171 4.2e-09 65.5 37 78.4
BraA09t39190Z Brassica rapa HOM05D000054 ORTHO05D000171 4.2e-09 65.5 37 78.4
Carub.0001s2796 Capsella rubella HOM05D000054 ORTHO05D000171 4.2e-09 65.5 37 81.1
Sp1g25620 Schrenkiella parvula HOM05D000054 ORTHO05D000171 5.5e-09 65.1 41 75.6
A07p10270 Brassica napus HOM05D000054 ORTHO05D000171 7.1e-09 64.7 41 73.2
C07p15820 Brassica napus HOM05D000054 ORTHO05D000171 7.1e-09 64.7 41 73.2
BolC7t42073H Brassica oleracea HOM05D000054 ORTHO05D000171 7.1e-09 64.7 41 73.2
BraA07t28826Z Brassica rapa HOM05D000054 ORTHO05D000171 7.1e-09 64.7 41 73.2
BraA07t28825Z Brassica rapa HOM05D000054 ORTHO05D000171 9.3e-09 64.3 37 83.8
CARHR029080 Cardamine hirsuta HOM05D000054 ORTHO05D000286 9.3e-09 64.3 42 76.2
A08p24920 Brassica napus HOM05D000054 ORTHO05D000171 1.2e-08 63.9 44 68.2
BraA08t34447Z Brassica rapa HOM05D000054 ORTHO05D000171 1.2e-08 63.9 44 68.2
BcaB02g08003 Brassica carinata HOM05D000054 ORTHO05D000171 1.6e-08 63.5 36 77.8
CARHR029060 Cardamine hirsuta HOM05D000054 ORTHO05D000171 1.6e-08 63.5 37 78.4
Sp1g25590 Schrenkiella parvula HOM05D000054 ORTHO05D000171 2.1e-08 63.2 37 81.1
AT1G29720 Arabidopsis thaliana HOM05D000054 ORTHO05D000171 2.7e-08 62.8 37 81.1
BcaB03g12173 Brassica carinata HOM05D000054 ORTHO05D000171 2.7e-08 62.8 37 78.4
C03p76050 Brassica napus HOM05D000054 ORTHO05D000171 2.7e-08 62.8 44 68.2
C03p76080 Brassica napus HOM05D000054 ORTHO05D000171 2.7e-08 62.8 37 81.1
BolC7t42085H Brassica oleracea HOM05D000054 ORTHO05D000171 2.7e-08 62.8 37 83.8
C03p76070 Brassica napus HOM05D000054 ORTHO05D005077 3.5e-08 62.4 44 68.2
BolC3t19861H Brassica oleracea HOM05D000054 ORTHO05D000171 3.5e-08 62.4 44 68.2
C05p37220 Brassica napus HOM05D000054 ORTHO05D000171 4.6e-08 62.0 36 80.6
BcaB03g12172 Brassica carinata HOM05D000054 ORTHO05D000171 6.0e-08 61.6 37 78.4
A02p30390 Brassica napus HOM05D000054 ORTHO05D000171 6.0e-08 61.6 41 68.3
BraA02t08054Z Brassica rapa HOM05D000054 ORTHO05D000171 6.0e-08 61.6 41 68.3
A07p10360 Brassica napus HOM05D000054 ORTHO05D000171 1.0e-07 60.8 37 81.1
BraA07t28838Z Brassica rapa HOM05D000054 ORTHO05D000171 1.0e-07 60.8 37 81.1
Lj3g0020486 Lotus japonicus HOM05D000054 ORTHO05D000286 1.3e-07 60.5 59 44.1
Carub.0001s2792 Capsella rubella HOM05D000054 ORTHO05D000171 1.8e-07 60.1 37 75.7
CiPaw.09G134200 Carya illinoinensis HOM05D000054 ORTHO05D000171 1.8e-07 60.1 41 65.9
CiPaw.09G134300 Carya illinoinensis HOM05D000054 ORTHO05D000171 2.3e-07 59.7 41 65.9
QL05p051513 Quercus lobata HOM05D000054 ORTHO05D000171 2.3e-07 59.7 41 68.3
QL05p052283 Quercus lobata HOM05D000054 ORTHO05D000171 2.3e-07 59.7 41 68.3
BraA07t28836Z Brassica rapa HOM05D000054 ORTHO05D005077 3.0e-07 59.3 36 75.0
MD10G1272800 Malus domestica HOM05D000054 ORTHO05D000171 3.0e-07 59.3 41 65.9
Thecc.06G161900 Theobroma cacao HOM05D000054 ORTHO05D000171 3.0e-07 59.3 41 65.9
Carub.0001s2794 Capsella rubella HOM05D000054 ORTHO05D000171 3.9e-07 58.9 37 73.0
Manes.17G061300 Manihot esculenta HOM05D000054 ORTHO05D000171 6.7e-07 58.2 41 63.4
Thecc.06G162300 Theobroma cacao HOM05D000054 ORTHO05D000171 6.7e-07 58.2 41 63.4
Thecc.06G162500 Theobroma cacao HOM05D000054 ORTHO05D000171 6.7e-07 58.2 41 63.4
Thecc.06G162600 Theobroma cacao HOM05D000054 ORTHO05D000171 6.7e-07 58.2 41 63.4
GSVIVG01021293001 Vitis vinifera HOM05D000054 ORTHO05D000171 6.7e-07 58.2 41 68.3
Potri.011G073366 Populus trichocarpa HOM05D000054 ORTHO05D000171 8.7e-07 57.8 41 61.0
QL05p051190 Quercus lobata HOM05D000054 ORTHO05D000171 8.7e-07 57.8 41 65.9
QL05p051710 Quercus lobata HOM05D000054 ORTHO05D000171 8.7e-07 57.8 41 65.9
Potri.011G072866 Populus trichocarpa HOM05D000054 ORTHO05D000171 1.1e-06 57.4 41 58.5
QL05p051832 Quercus lobata HOM05D000054 ORTHO05D000171 1.1e-06 57.4 41 63.4
BcaB03g13864 Brassica carinata HOM05D000054 ORTHO05D000171 1.9e-06 56.6 41 65.9
COL.COLO4_22842 Corchorus olitorius HOM05D000054 ORTHO05D000171 1.9e-06 56.6 41 63.4
Duzib235G0795 Durio zibethinus HOM05D000054 ORTHO05D000171 1.9e-06 56.6 41 61.0
Gohir.A05G152600 Gossypium hirsutum HOM05D000054 ORTHO05D000171 1.9e-06 56.6 41 63.4
Potri.011G072591 Populus trichocarpa HOM05D000054 ORTHO05D000171 1.9e-06 56.6 41 58.5
Potri.011G072941 Populus trichocarpa HOM05D000054 ORTHO05D000171 1.9e-06 56.6 41 58.5
Potri.011G073066 Populus trichocarpa HOM05D000054 ORTHO05D000171 1.9e-06 56.6 41 58.5
Potri.011G073191 Populus trichocarpa HOM05D000054 ORTHO05D000171 1.9e-06 56.6 41 58.5
Potri.011G073241 Populus trichocarpa HOM05D000054 ORTHO05D000171 1.9e-06 56.6 41 58.5
RcHm_v2.0_Chr5g0012291 Rosa chinensis HOM05D000054 ORTHO05D005077 1.9e-06 56.6 41 63.4
GSVIVG01021291001 Vitis vinifera HOM05D000054 ORTHO05D000171 1.9e-06 56.6 41 58.5
Potri.011G072741 Populus trichocarpa HOM05D000054 ORTHO05D000171 2.5e-06 56.2 41 58.5
Potri.011G072966 Populus trichocarpa HOM05D000054 ORTHO05D000171 2.5e-06 56.2 41 58.5
Potri.011G073516 Populus trichocarpa HOM05D000054 ORTHO05D000171 2.5e-06 56.2 41 58.5
Sabra11G0061500 Salix brachista HOM05D000054 ORTHO05D000171 2.5e-06 56.2 55 45.5
FAN21G3729 Fragaria x ananassa HOM05D000054 ORTHO05D000171 3.3e-06 55.8 41 58.5
Thecc.06G162200 Theobroma cacao HOM05D000054 ORTHO05D000171 3.3e-06 55.8 62 48.4
TWI73G0043 Tripterygium wilfordii HOM05D000054 ORTHO05D000171 3.3e-06 55.8 41 63.4
TAR627G0417 Trochodendron aralioides HOM05D000054 ORTHO05D000171 3.3e-06 55.8 41 58.5
TAR627G1119 Trochodendron aralioides HOM05D000054 ORTHO05D000171 3.3e-06 55.8 41 58.5
GSVIVG01021295001 Vitis vinifera HOM05D000054 ORTHO05D000171 3.3e-06 55.8 41 63.4
C03p76100 Brassica napus HOM05D000054 ORTHO05D000171 4.3e-06 55.5 30 86.7
Haze_05416 Corylus avellana HOM05D000054 ORTHO05D000171 4.3e-06 55.5 50 56.0
FAN11G3361 Fragaria x ananassa HOM05D000054 ORTHO05D000171 4.3e-06 55.5 41 58.5
Gohir.A05G152675 Gossypium hirsutum HOM05D000054 ORTHO05D005077 4.3e-06 55.5 41 61.0
Gohir.A12G042380 Gossypium hirsutum HOM05D000054 ORTHO05D000171 4.3e-06 55.5 41 61.0
Gohir.D05G155420 Gossypium hirsutum HOM05D000054 ORTHO05D000171 4.3e-06 55.5 41 61.0
Gorai.009G159400 Gossypium raimondii HOM05D000054 ORTHO05D000171 4.3e-06 55.5 41 61.0
Gorai.009G159500 Gossypium raimondii HOM05D000054 ORTHO05D000171 4.3e-06 55.5 41 61.0
Gorai.009G159600 Gossypium raimondii HOM05D000054 ORTHO05D000171 4.3e-06 55.5 41 61.0
Potri.011G073016 Populus trichocarpa HOM05D000054 ORTHO05D000171 4.3e-06 55.5 41 58.5
Potri.011G072841 Populus trichocarpa HOM05D000054 ORTHO05D000171 5.6e-06 55.1 41 56.1
Gohir.D05G155340 Gossypium hirsutum HOM05D000054 ORTHO05D000171 7.4e-06 54.7 41 61.0
Manes.17G061400 Manihot esculenta HOM05D000054 ORTHO05D000171 7.4e-06 54.7 41 63.4
Potri.011G073391 Populus trichocarpa HOM05D000054 ORTHO05D000171 7.4e-06 54.7 37 62.2
Sabra11G0060400 Salix brachista HOM05D000054 ORTHO05D000171 7.4e-06 54.7 37 59.5
Sabra11G0060800 Salix brachista HOM05D000054 ORTHO05D000171 7.4e-06 54.7 37 59.5
Sabra11G0061700 Salix brachista HOM05D000054 ORTHO05D000171 7.4e-06 54.7 37 59.5
Sabra11G0062200 Salix brachista HOM05D000054 ORTHO05D000171 7.4e-06 54.7 46 56.5
Dinv12726 Davidia involucrata HOM05D000054 ORTHO05D000171 9.6e-06 54.3 41 58.5
FvH4_3g06810 Fragaria vesca HOM05D000054 ORTHO05D000171 9.6e-06 54.3 41 61.0
FvH4_3g06830 Fragaria vesca HOM05D000054 ORTHO05D000171 9.6e-06 54.3 41 61.0
FAN11G2174 Fragaria x ananassa HOM05D000054 ORTHO05D000171 9.6e-06 54.3 41 61.0
FAN16G2114 Fragaria x ananassa HOM05D000054 ORTHO05D000171 9.6e-06 54.3 41 61.0
FAN21G3260 Fragaria x ananassa HOM05D000054 ORTHO05D000171 9.6e-06 54.3 41 61.0
FAN25G0989 Fragaria x ananassa HOM05D000054 ORTHO05D000171 9.6e-06 54.3 41 61.0
Manes.16G044450 Manihot esculenta HOM05D000054 ORTHO05D000171 9.6e-06 54.3 41 61.0
PGR083G2082 Punica granatum HOM05D000054 ORTHO05D000171 9.6e-06 54.3 51 49.0
Rhsim02G0088900 Rhododendron simsii HOM05D000054 ORTHO05D000171 9.6e-06 54.3 41 61.0
Sabra11G0060600 Salix brachista HOM05D000054 ORTHO05D000171 9.6e-06 54.3 37 59.5
Sabra11G0061100 Salix brachista HOM05D000054 ORTHO05D000171 9.6e-06 54.3 37 59.5
Sabra11G0062600 Salix brachista HOM05D000054 ORTHO05D000171 9.6e-06 54.3 37 59.5
THA.LOC104820631 Tarenaya hassleriana HOM05D000054 ORTHO05D000171 9.6e-06 54.3 47 59.6


User provided reference genes

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