Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G42790 Arabidopsis lyrata HOM05D005954 ORTHO05D007347 4.5e-75 284.6 160 100.0
AT1G29070 Arabidopsis thaliana HOM05D005954 ORTHO05D007347 4.9e-69 264.6 160 95.0
Carub.0001s2727 Capsella rubella HOM05D005954 ORTHO05D007347 4.7e-64 248.1 160 91.2
Sp1g25010 Schrenkiella parvula HOM05D005954 ORTHO05D007347 7.0e-60 234.2 162 86.4
Thhalv10008967m.g Eutrema salsugineum HOM05D005954 ORTHO05D007347 9.2e-60 233.8 162 85.8
BcaB07g32486 Brassica carinata HOM05D005954 ORTHO05D007347 4.6e-59 231.5 163 84.0
CARHR028290 Cardamine hirsuta HOM05D005954 ORTHO05D007347 7.8e-59 230.7 162 87.7
A09p37340 Brassica napus HOM05D005954 ORTHO05D007347 1.0e-58 230.3 160 84.4
BraA09t39243Z Brassica rapa HOM05D005954 ORTHO05D007347 1.0e-58 230.3 160 84.4
BcaNung06433 Brassica carinata HOM05D005954 ORTHO05D007347 3.0e-58 228.8 162 84.6
Aa31LG5G21180 Aethionema arabicum HOM05D005954 ORTHO05D007347 1.9e-57 226.1 165 82.4
C03p75510 Brassica napus HOM05D005954 ORTHO05D007347 5.6e-57 224.6 163 84.0
A08p25330 Brassica napus HOM05D005954 ORTHO05D007347 1.2e-56 223.4 160 83.8
BraA08t34485Z Brassica rapa HOM05D005954 ORTHO05D007347 1.2e-56 223.4 160 83.8
BolC3t19807H Brassica oleracea HOM05D005954 ORTHO05D007347 1.1e-55 220.3 163 82.8
BcaNung06755 Brassica carinata HOM05D005954 ORTHO05D007347 1.8e-55 219.5 163 82.8
C07p16610 Brassica napus HOM05D005954 ORTHO05D007347 3.4e-54 215.3 160 84.4
BcaC05g26922 Brassica carinata HOM05D005954 ORTHO05D007347 1.3e-50 203.4 160 78.1
C05p27750 Brassica napus HOM05D005954 ORTHO05D007347 1.3e-50 203.4 160 78.1
BolC5t31496H Brassica oleracea HOM05D005954 ORTHO05D007347 1.3e-50 203.4 160 78.1
THA.LOC104820590 Tarenaya hassleriana HOM05D005954 ORTHO05D007347 4.2e-44 181.8 162 69.8
BcaC06g35397 Brassica carinata HOM05D005954 ORTHO05D007347 1.6e-43 179.9 160 75.0
MELO3C007218.2 Cucumis melo HOM05D005954 ORTHO05D007347 6.0e-35 151.4 156 67.9
Gorai.009G163700 Gossypium raimondii HOM05D005954 ORTHO05D007347 5.1e-34 148.3 137 67.9
CsaV3_6G050830 Cucumis sativus L. HOM05D005954 ORTHO05D007347 6.6e-34 147.9 156 67.3
Atru.chr10.1690 Acer truncatum HOM05D005954 ORTHO05D007347 8.7e-34 147.5 153 61.4
Gohir.D05G158700 Gossypium hirsutum HOM05D005954 ORTHO05D007347 8.7e-34 147.5 137 67.2
Cpa.g.sc7.59 Carica papaya HOM05D005954 ORTHO05D007347 1.5e-33 146.7 163 63.2
Gohir.A05G156000 Gossypium hirsutum HOM05D005954 ORTHO05D007347 5.6e-33 144.8 137 67.2
Ciclev10017015m.g Citrus clementina HOM05D005954 ORTHO05D007347 9.6e-33 144.1 139 66.2
Nn1g09054 Nelumbo nucifera HOM05D005954 ORTHO05D007347 9.6e-33 144.1 158 61.4
MD10G1282300 Malus domestica HOM05D005954 ORTHO05D007347 2.1e-32 142.9 155 63.2
Manes.17G054200 Manihot esculenta HOM05D005954 ORTHO05D007347 2.1e-32 142.9 160 63.1
ClCG01G023670 Citrullus lanatus HOM05D005954 ORTHO05D007347 2.8e-32 142.5 156 65.4
Gohir.A06G134004 Gossypium hirsutum HOM05D005954 ORTHO05D007347 4.8e-32 141.7 133 69.2
PGR004G0539 Punica granatum HOM05D005954 ORTHO05D007347 4.8e-32 141.7 163 61.3
PGR004G0737 Punica granatum HOM05D005954 ORTHO05D007347 4.8e-32 141.7 163 61.3
Gohir.D06G136500 Gossypium hirsutum HOM05D005954 ORTHO05D007347 6.2e-32 141.4 134 68.7
Thecc.06G173000 Theobroma cacao HOM05D005954 ORTHO05D007347 6.2e-32 141.4 139 66.2
Gorai.010G158700 Gossypium raimondii HOM05D005954 ORTHO05D007347 8.1e-32 141.0 134 68.7
TWI38G2142 Tripterygium wilfordii HOM05D005954 ORTHO05D007347 8.1e-32 141.0 131 65.6
Manes.16G037400 Manihot esculenta HOM05D005954 ORTHO05D007347 2.4e-31 139.4 160 61.2
Prupe.4G059500 Prunus persica HOM05D005954 ORTHO05D007347 3.1e-31 139.0 157 61.8
Cc02_g14660 Coffea canephora HOM05D005954 ORTHO05D007347 5.3e-31 138.3 144 65.3
FAN21G0082 Fragaria x ananassa HOM05D005954 ORTHO05D007347 9.0e-31 137.5 155 61.9
MSTRG.14726 Avicennia marina HOM05D005954 ORTHO05D007347 1.2e-30 137.1 138 63.8
PGSC0003DMG400021493 Solanum tuberosum HOM05D005954 ORTHO05D007347 1.2e-30 137.1 140 65.0
Eucgr.D00519 Eucalyptus grandis HOM05D005954 ORTHO05D007347 2.0e-30 136.3 162 58.0
FvH4_3g07980 Fragaria vesca HOM05D005954 ORTHO05D007347 2.0e-30 136.3 155 61.3
FAN16G0914 Fragaria x ananassa HOM05D005954 ORTHO05D007347 2.0e-30 136.3 155 61.3
Nitab4.5_0004274g0040 Nicotiana tabacum HOM05D005954 ORTHO05D007347 2.0e-30 136.3 143 62.9
CANSAT11G0094 Cannabis sativa HOM05D005954 ORTHO05D007347 5.8e-30 134.8 170 60.6
Dinv04624 Davidia involucrata HOM05D005954 ORTHO05D007347 9.9e-30 134.0 159 60.4
Nitab4.5_0000117g0150 Nicotiana tabacum HOM05D005954 ORTHO05D007347 9.9e-30 134.0 143 62.2
RcHm_v2.0_Chr5g0010351 Rosa chinensis HOM05D005954 ORTHO05D007347 9.9e-30 134.0 155 60.6
Potri.011G064800 Populus trichocarpa HOM05D005954 ORTHO05D007347 1.3e-29 133.7 159 60.4
Solyc01g056780.3 Solanum lycopersicum HOM05D005954 ORTHO05D007347 1.3e-29 133.7 140 62.1
Peaxi162Scf00061g00155 Petunia axillaris HOM05D005954 ORTHO05D007347 1.7e-29 133.3 139 61.9
AUR62036591 Chenopodium quinoa HOM05D005954 ORTHO05D007347 2.2e-29 132.9 131 65.6
Duzib160G0806 Durio zibethinus HOM05D005954 ORTHO05D007347 2.2e-29 132.9 137 65.7
FAN11G0799 Fragaria x ananassa HOM05D005954 ORTHO05D007347 3.8e-29 132.1 155 60.0
GSVIVG01021193001 Vitis vinifera HOM05D005954 ORTHO05D007347 3.8e-29 132.1 109 73.4
TAR626G1287 Trochodendron aralioides HOM05D005954 ORTHO05D007347 4.9e-29 131.7 135 63.7
Haze_06257 Corylus avellana HOM05D005954 ORTHO05D007347 6.4e-29 131.3 163 56.4
PSO541G3988 Papaver somniferum HOM05D005954 ORTHO05D007347 8.4e-29 131.0 143 60.1
PSO675G5672 Papaver somniferum HOM05D005954 ORTHO05D007347 1.1e-28 130.6 143 59.4
Sed0006910 Sechium edule HOM05D005954 ORTHO05D007347 1.1e-28 130.6 154 62.3
Sopen01g025250 Solanum pennellii HOM05D005954 ORTHO05D007347 1.4e-28 130.2 142 60.6
MD05G1303200 Malus domestica HOM05D005954 ORTHO05D007347 1.9e-28 129.8 155 58.7
CSS0014251 Camellia sinensis var. sinensis HOM05D005954 ORTHO05D007347 3.2e-28 129.0 141 59.6
CDE05G1458 Ceratophyllum demersum HOM05D005954 ORTHO05D007347 4.2e-28 128.6 133 63.9
QL05p046336 Quercus lobata HOM05D005954 ORTHO05D007347 4.2e-28 128.6 135 63.0
Ah.09g233660 Amaranthus hybridus HOM05D005954 ORTHO05D007347 5.4e-28 128.3 132 62.9
AUR62031174 Chenopodium quinoa HOM05D005954 ORTHO05D007347 2.7e-27 125.9 131 63.4
Migut.H01450 Erythranthe guttata HOM05D005954 ORTHO05D007347 2.7e-27 125.9 138 60.1
HanXRQChr04g0116001 Helianthus annuus HOM05D005954 ORTHO05D007347 2.7e-27 125.9 135 63.0
Lsat_1_v5_gn_7_23061 Lactuca sativa HOM05D005954 ORTHO05D007347 2.7e-27 125.9 141 61.7
DCAR_007962 Daucus carota HOM05D005954 ORTHO05D007347 6.0e-27 124.8 135 61.5
Phvul.006G176900 Phaseolus vulgaris HOM05D005954 ORTHO05D007347 7.9e-27 124.4 133 62.4
Phvul.006G176980 Phaseolus vulgaris HOM05D005954 ORTHO05D007347 7.9e-27 124.4 133 62.4
Lj6g0020578 Lotus japonicus HOM05D005954 ORTHO05D007347 1.8e-26 123.2 134 61.2
SalBow8G3893 Salvia bowleyana HOM05D005954 ORTHO05D007347 1.8e-26 123.2 137 63.5
Glyma.13G230600 Glycine max HOM05D005954 ORTHO05D007347 2.3e-26 122.9 133 63.2
EL10Ac8g20509 Beta vulgaris HOM05D005954 ORTHO05D007347 8.7e-26 120.9 119 67.2
arahy.Tifrunner.gnm1.ann1.N07IEU Arachis hypogaea HOM05D005954 ORTHO05D007347 1.5e-25 120.2 135 61.5
ECA236G0551 Erigeron canadensis HOM05D005954 ORTHO05D007347 1.9e-25 119.8 139 60.4
Hund23979 Selenicereus undatus HOM05D005954 ORTHO05D007347 5.6e-25 118.2 132 62.1
TPR.G11659 Trifolium pratense HOM05D005954 ORTHO05D007347 1.3e-24 117.1 160 54.4
Sabra11G0046600 Salix brachista HOM05D005954 ORTHO05D007347 1.6e-24 116.7 203 50.2
CDE02G3841 Ceratophyllum demersum HOM05D005954 ORTHO05D009675 3.7e-24 115.5 118 64.4
Cfa000593 Carpinus fangiana HOM05D005954 ORTHO05D007347 6.2e-24 114.8 162 51.2
CiPaw.09G068600 Carya illinoinensis HOM05D005954 ORTHO05D007347 1.1e-23 114.0 172 52.3
COL.COLO4_31320 Corchorus olitorius HOM05D005954 ORTHO05D007347 1.1e-23 114.0 76 80.3
Glyma.15G082000 Glycine max HOM05D005954 ORTHO05D007347 1.1e-23 114.0 161 54.7
arahy.Tifrunner.gnm1.ann1.YBYE48 Arachis hypogaea HOM05D005954 ORTHO05D007347 2.4e-23 112.8 144 59.0
CAN.G889.12 Capsicum annuum HOM05D005954 ORTHO05D007347 1.2e-22 110.5 166 52.4
MD16G1032000 Malus domestica HOM05D005954 ORTHO05D007347 2.0e-22 109.8 163 52.8
Aqoxy1G03187 Aquilegia oxysepala HOM05D005954 ORTHO05D007347 2.6e-22 109.4 131 59.5
Medtr2g015790 Medicago truncatula HOM05D005954 ORTHO05D007347 2.6e-22 109.4 160 51.9
Oeu001090.1 Olea europaea HOM05D005954 ORTHO05D007347 2.6e-22 109.4 108 63.9
Atru.chr10.1684 Acer truncatum HOM05D005954 ORTHO05D007347 4.5e-22 108.6 72 79.2
arahy.Tifrunner.gnm1.ann1.69550A Arachis hypogaea HOM05D005954 ORTHO05D007347 4.5e-22 108.6 122 63.1
SGA_v2.0_scaffold1G00032 Striga asiatica HOM05D005954 ORTHO05D007347 5.8e-22 108.2 160 55.6
unitig_22.g6753 Utricularia gibba HOM05D005954 ORTHO05D007347 1.3e-21 107.1 164 50.0
MD10G1067400 Malus domestica HOM05D005954 ORTHO05D007347 3.8e-21 105.5 145 53.8
MBI13_g00561_MAGBIO Magnolia biondii HOM05D005954 ORTHO05D007347 1.9e-20 103.2 165 50.3
Lj1P1194T69 Lonicera japonica HOM05D005954 ORTHO05D007347 4.2e-20 102.1 87 66.7
Psat1g199440 Pisum sativum HOM05D005954 ORTHO05D007347 9.3e-20 100.9 136 58.1
Rhsim13G0191500 Rhododendron simsii HOM05D005954 ORTHO05D007347 1.6e-19 100.1 140 53.6
Zm00001eb150530 Zea mays HOM05D005954 ORTHO05D007347 3.5e-19 99.0 86 66.3
ATR0602G014 Amborella trichopoda HOM05D005954 ORTHO05D007347 6.0e-19 98.2 136 54.4
CARHR028330 Cardamine hirsuta HOM05D005954 ORTHO05D007347 6.0e-19 98.2 59 89.8
HPP92_016045 Vanilla planifolia HOM05D005954 ORTHO05D007347 1.3e-18 97.1 94 63.8
Lalb_Chr20g0121221 Lupinus albus HOM05D005954 ORTHO05D007347 2.3e-18 96.3 66 80.3
Sc05g0007180 Simmondsia chinensis HOM05D005954 ORTHO05D007347 3.0e-18 95.9 77 70.1
vmacro01548 Vaccinium macrocarpon HOM05D005954 ORTHO05D007347 3.0e-18 95.9 158 48.1
Os01g0805000 Oryza sativa ssp. japonica HOM05D005954 ORTHO05D007347 1.5e-17 93.6 90 61.1
Ca_00467_v3 Cicer arietinum L. HOM05D005954 ORTHO05D007347 3.3e-17 92.4 92 60.9
Ca_30955_v3 Cicer arietinum L. HOM05D005954 ORTHO05D007347 3.3e-17 92.4 92 60.9
MD16G1032400 Malus domestica HOM05D005954 ORTHO05D007347 1.6e-16 90.1 100 62.0
BolC7t42159H Brassica oleracea HOM05D003540 ORTHO05D004012 4.5e-14 82.0 74 78.4
MD16G1032600 Malus domestica HOM05D005954 ORTHO05D007347 2.7e-11 72.8 119 49.6
Pp3c18_19220 Physcomitrium patens HOM05D005954 ORTHO05D007347 2.7e-11 72.8 133 48.9
Pp3c21_6450 Physcomitrium patens HOM05D005954 ORTHO05D007347 1.1e-09 67.4 135 47.4
SEGI_22528 Sequoiadendron giganteum HOM05D005954 ORTHO05D007347 1.5e-09 67.0 70 60.0
Mapoly0043s0046 Marchantia polymorpha HOM05D005954 ORTHO05D007347 5.7e-09 65.1 126 46.8
CBR_g29683 Chara braunii HOM05D005954 ORTHO05D007347 1.6e-08 63.5 147 42.2
AagrBONN_evm.TU.Sc2ySwM_117.1983 Anthoceros agrestis HOM05D005954 ORTHO05D007347 3.7e-08 62.4 133 42.1
Nn3g19836 Nelumbo nucifera HOM05D005954 ORTHO05D007347 5.9e-06 55.1 46 67.4


User provided reference genes

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