Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G41800 Arabidopsis lyrata HOM05D007285 ORTHO05D009224 7.5e-50 200.3 106 100.0
AT1G28250 Arabidopsis thaliana HOM05D007285 ORTHO05D009224 5.5e-45 184.1 102 96.1
Carub.0001s2669 Capsella rubella HOM05D007285 ORTHO05D009224 1.5e-42 176.0 107 88.8
CARHR027740 Cardamine hirsuta HOM05D007285 ORTHO05D009224 5.7e-42 174.1 102 91.2
BolC3t19748H Brassica oleracea HOM05D007285 ORTHO05D009224 7.5e-42 173.7 106 82.1
BcaB07g32433 Brassica carinata HOM05D007285 ORTHO05D009224 2.2e-41 172.2 106 83.0
Thhalv10009792m.g Eutrema salsugineum HOM05D007285 ORTHO05D009224 3.8e-38 161.4 112 76.8
A09p37820 Brassica napus HOM05D007285 ORTHO05D009224 8.6e-38 160.2 107 81.3
BraA09t39294Z Brassica rapa HOM05D007285 ORTHO05D009224 8.6e-38 160.2 107 81.3
BcaC05g26830 Brassica carinata HOM05D007285 ORTHO05D009224 1.1e-37 159.8 107 81.3
BcaC01g00030 Brassica carinata HOM05D007285 ORTHO05D009224 1.5e-37 159.5 132 65.9
C05p27060 Brassica napus HOM05D007285 ORTHO05D009224 2.5e-37 158.7 107 80.4
Aa31LG6G10160 Aethionema arabicum HOM05D007285 ORTHO05D009224 4.3e-37 157.9 103 77.7
BolC5t31425H Brassica oleracea HOM05D007285 ORTHO05D009224 2.6e-34 148.7 125 69.6
THA.LOC104820545 Tarenaya hassleriana HOM05D007285 ORTHO05D009224 1.3e-33 146.4 107 69.2
Ciclev10017252m.g Citrus clementina HOM05D007285 ORTHO05D009224 2.3e-30 135.6 102 66.7
Potri.004G045400 Populus trichocarpa HOM05D007285 ORTHO05D009224 3.9e-30 134.8 101 65.3
TWI38G2229 Tripterygium wilfordii HOM05D007285 ORTHO05D009224 2.5e-29 132.1 101 65.3
Thecc.06G185100 Theobroma cacao HOM05D007285 ORTHO05D009224 4.3e-29 131.3 107 63.6
BcaB03g12118 Brassica carinata HOM05D007285 ORTHO05D009224 7.3e-29 130.6 81 77.8
COL.COLO4_31450 Corchorus olitorius HOM05D007285 ORTHO05D009224 9.5e-29 130.2 98 66.3
Manes.17G046800 Manihot esculenta HOM05D007285 ORTHO05D009224 2.1e-28 129.0 99 63.6
TWI63G1057 Tripterygium wilfordii HOM05D007285 ORTHO05D009224 3.6e-28 128.3 101 64.4
Atru.chr10.1858 Acer truncatum HOM05D007285 ORTHO05D009224 4.7e-28 127.9 101 61.4
CsaV3_1G012400 Cucumis sativus L. HOM05D007285 ORTHO05D009224 6.2e-28 127.5 97 63.9
Gohir.D06G133300 Gossypium hirsutum HOM05D007285 ORTHO05D009224 6.2e-28 127.5 103 64.1
Prupe.4G049200 Prunus persica HOM05D007285 ORTHO05D009224 6.2e-28 127.5 102 62.7
MD00G1116000 Malus domestica HOM05D007285 ORTHO05D009224 8.0e-28 127.1 102 61.8
FvH4_3g08990 Fragaria vesca HOM05D007285 ORTHO05D009224 1.0e-27 126.7 94 63.8
FAN16G1611 Fragaria x ananassa HOM05D007285 ORTHO05D009224 1.0e-27 126.7 94 63.8
FAN21G1653 Fragaria x ananassa HOM05D007285 ORTHO05D009224 1.0e-27 126.7 94 63.8
FAN25G3510 Fragaria x ananassa HOM05D007285 ORTHO05D009224 1.0e-27 126.7 96 62.5
Gorai.010G155100 Gossypium raimondii HOM05D007285 ORTHO05D009224 1.0e-27 126.7 103 64.1
Ca_18554_v3 Cicer arietinum L. HOM05D007285 ORTHO05D009224 1.4e-27 126.3 101 62.4
Gohir.A06G129300 Gossypium hirsutum HOM05D007285 ORTHO05D009224 1.8e-27 125.9 103 64.1
MD10G1292600 Malus domestica HOM05D007285 ORTHO05D009224 2.3e-27 125.6 102 60.8
Sed0014393 Sechium edule HOM05D007285 ORTHO05D009224 3.1e-27 125.2 97 61.9
CiPaw.09G061300 Carya illinoinensis HOM05D007285 ORTHO05D009224 4.0e-27 124.8 93 65.6
RcHm_v2.0_Chr5g0008721 Rosa chinensis HOM05D007285 ORTHO05D009224 4.0e-27 124.8 94 63.8
Actinidia07587 Actinidia chinensis HOM05D007285 ORTHO05D009224 5.2e-27 124.4 102 62.7
Hma1.2p1_0208F.1_g088230 Hydrangea macrophylla HOM05D007285 ORTHO05D009224 6.8e-27 124.0 93 65.6
Medtr4g088680 Medicago truncatula HOM05D007285 ORTHO05D009224 8.9e-27 123.6 101 61.4
ClCG03G008150 Citrullus lanatus HOM05D007285 ORTHO05D009224 1.2e-26 123.2 97 61.9
Rhsim02G0132100 Rhododendron simsii HOM05D007285 ORTHO05D009224 1.5e-26 122.9 105 61.9
Actinidia26129 Actinidia chinensis HOM05D007285 ORTHO05D009224 2.6e-26 122.1 103 64.1
Dinv40575 Davidia involucrata HOM05D007285 ORTHO05D009224 4.4e-26 121.3 93 66.7
Sed0001788 Sechium edule HOM05D007285 ORTHO05D009224 4.4e-26 121.3 95 62.1
arahy.Tifrunner.gnm1.ann1.J7N80D Arachis hypogaea HOM05D007285 ORTHO05D009224 7.5e-26 120.6 96 62.5
arahy.Tifrunner.gnm1.ann1.VSLT1W Arachis hypogaea HOM05D007285 ORTHO05D009224 7.5e-26 120.6 96 62.5
Migut.M01131 Erythranthe guttata HOM05D007285 ORTHO05D009224 1.7e-25 119.4 96 64.6
Psat7g114520 Pisum sativum HOM05D007285 ORTHO05D009224 2.2e-25 119.0 90 67.8
SalBow8G5072 Salvia bowleyana HOM05D007285 ORTHO05D009224 2.2e-25 119.0 94 64.9
Eucgr.E03264 Eucalyptus grandis HOM05D007285 ORTHO05D009224 2.9e-25 118.6 100 60.0
Lj4g0016922 Lotus japonicus HOM05D007285 ORTHO05D009224 3.7e-25 118.2 101 60.4
Lsat_1_v5_gn_4_52261 Lactuca sativa HOM05D007285 ORTHO05D009224 8.3e-25 117.1 105 59.0
Dinv17325 Davidia involucrata HOM05D007285 ORTHO05D009224 1.1e-24 116.7 93 66.7
Lalb_Chr15g0089751 Lupinus albus HOM05D007285 ORTHO05D009224 1.4e-24 116.3 102 58.8
PGR042G2867 Punica granatum HOM05D007285 ORTHO05D009224 1.4e-24 116.3 93 62.4
TPR.G16329 Trifolium pratense HOM05D007285 ORTHO05D009224 1.4e-24 116.3 99 60.6
Nitab4.5_0005745g0020 Nicotiana tabacum HOM05D007285 ORTHO05D009224 1.9e-24 115.9 106 56.6
Peaxi162Scf00623g00519 Petunia axillaris HOM05D007285 ORTHO05D009224 1.9e-24 115.9 109 56.9
C03p74970 Brassica napus HOM05D007285 ORTHO05D009224 2.4e-24 115.5 114 56.1
MSTRG.7339 Avicennia marina HOM05D007285 ORTHO05D009224 3.2e-24 115.2 92 65.2
VMungo0251G0987 Vigna mungo HOM05D007285 ORTHO05D009224 4.1e-24 114.8 96 60.4
Glyma.07G198400 Glycine max HOM05D007285 ORTHO05D009224 5.4e-24 114.4 89 65.2
Phvul.002G229600 Phaseolus vulgaris HOM05D007285 ORTHO05D009224 5.4e-24 114.4 96 59.4
CSS0032734 Camellia sinensis var. sinensis HOM05D007285 ORTHO05D009224 1.2e-23 113.2 103 61.2
Glyma.13G178000 Glycine max HOM05D007285 ORTHO05D009224 1.6e-23 112.8 89 65.2
SGA_v2.0_scaffold100G29692 Striga asiatica HOM05D007285 ORTHO05D009224 1.6e-23 112.8 92 63.0
CANSAT35G0751 Cannabis sativa HOM05D007285 ORTHO05D009224 2.0e-23 112.5 95 56.8
CAN.G529.14 Capsicum annuum HOM05D007285 ORTHO05D009224 2.0e-23 112.5 99 58.6
Sopen02g022850 Solanum pennellii HOM05D007285 ORTHO05D009224 2.7e-23 112.1 104 57.7
HanXRQChr14g0435131 Helianthus annuus HOM05D007285 ORTHO05D009224 3.5e-23 111.7 101 60.4
Solyc02g078010.4 Solanum lycopersicum HOM05D007285 ORTHO05D009224 3.5e-23 111.7 104 56.7
Hund23773 Selenicereus undatus HOM05D007285 ORTHO05D009224 6.0e-23 110.9 99 58.6
EL10Ac8g20395 Beta vulgaris HOM05D007285 ORTHO05D009224 7.8e-23 110.5 103 56.3
Cc02_g13540 Coffea canephora HOM05D007285 ORTHO05D009224 7.8e-23 110.5 98 59.2
DCAR_008032 Daucus carota HOM05D007285 ORTHO05D009224 1.7e-22 109.4 94 58.5
AUR62017028 Chenopodium quinoa HOM05D007285 ORTHO05D009224 3.0e-22 108.6 103 56.3
Nn1g04136 Nelumbo nucifera HOM05D007285 ORTHO05D009224 5.0e-22 107.8 93 60.2
Ah.09g237440 Amaranthus hybridus HOM05D007285 ORTHO05D009224 1.5e-21 106.3 103 54.4
unitig_27.g24965 Utricularia gibba HOM05D007285 ORTHO05D009224 5.6e-21 104.4 91 60.4
TAR626G1757 Trochodendron aralioides HOM05D007285 ORTHO05D009224 9.5e-21 103.6 99 54.5
Sc05g0007570 Simmondsia chinensis HOM05D007285 ORTHO05D009224 1.2e-20 103.2 104 53.8
Sabra04G0028300 Salix brachista HOM05D007285 ORTHO05D009224 2.1e-20 102.4 153 41.8
HPP92_007016 Vanilla planifolia HOM05D007285 ORTHO05D009224 3.6e-20 101.7 93 55.9
PSO541G0778 Papaver somniferum HOM05D007285 ORTHO05D009224 8.1e-20 100.5 100 51.0
QL05p041285 Quercus lobata HOM05D007285 ORTHO05D009224 1.4e-19 99.8 77 64.9
ATR0763G085 Amborella trichopoda HOM05D007285 ORTHO05D009224 2.3e-19 99.0 86 60.5
CDE01G0551 Ceratophyllum demersum HOM05D007285 ORTHO05D009224 3.1e-19 98.6 96 49.0
Haze_06424 Corylus avellana HOM05D007285 ORTHO05D009224 2.6e-18 95.5 82 59.8
Zm00001eb305570 Zea mays HOM05D007285 ORTHO05D009224 7.5e-18 94.0 96 50.0
SEGI_38595 Sequoiadendron giganteum HOM05D007285 ORTHO05D009224 2.9e-17 92.0 90 50.0
ECA234G4273 Erigeron canadensis HOM05D007285 ORTHO05D009224 1.1e-16 90.1 80 60.0
vmacro15913 Vaccinium macrocarpon HOM05D007285 ORTHO05D009224 2.4e-16 89.0 83 59.0
Pp3c8_510 Physcomitrium patens HOM05D007285 ORTHO05D009224 9.2e-16 87.0 100 51.0
DCAR_004065 Daucus carota HOM05D007285 ORTHO05D009224 1.6e-15 86.3 83 55.4
PGSC0003DMG401029703 Solanum tuberosum HOM05D007285 ORTHO05D009224 4.6e-15 84.7 83 55.4
SalBow8G3155 Salvia bowleyana HOM05D007285 ORTHO05D009224 7.8e-15 84.0 62 66.1
MELO3C002614.2 Cucumis melo HOM05D007285 ORTHO05D009224 2.3e-14 82.4 60 65.0
Mapoly0007s0165 Marchantia polymorpha HOM05D007285 ORTHO05D009224 1.9e-13 79.3 97 50.5
Os07g0299600 Oryza sativa ssp. japonica HOM05D007285 ORTHO05D009224 2.1e-12 75.9 82 48.8
CDE12G0235 Ceratophyllum demersum HOM05D007285 ORTHO05D009224 2.4e-08 62.4 96 38.5
A08p25730 Brassica napus HOM05D007285 ORTHO05D009224 1.3e-06 56.6 36 66.7
BraA08t34523Z Brassica rapa HOM05D007285 ORTHO05D009224 1.3e-06 56.6 36 66.7
SMO229G0021 Selaginella moellendorffii HOM05D007397 ORTHO05D009336 6.6e-06 54.3 64 48.4


User provided reference genes

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