Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G41670 Arabidopsis lyrata HOM05D005950 ORTHO05D008673 8.6e-154 547.0 281 100.0
AT1G28140 Arabidopsis thaliana HOM05D005950 ORTHO05D008673 1.1e-145 520.0 281 94.7
Carub.0001s2657 Capsella rubella HOM05D005950 ORTHO05D008673 7.8e-139 497.3 281 91.5
Sp1g24330 Schrenkiella parvula HOM05D005950 ORTHO05D008673 1.2e-131 473.4 282 87.6
CARHR027610 Cardamine hirsuta HOM05D005950 ORTHO05D008673 3.0e-130 468.8 284 86.3
Thhalv10008446m.g Eutrema salsugineum HOM05D005950 ORTHO05D008673 9.6e-129 463.8 281 86.1
BolC5t31407H Brassica oleracea HOM05D005950 ORTHO05D008673 1.7e-125 453.0 282 84.0
BcaC05g26819 Brassica carinata HOM05D005950 ORTHO05D008673 1.4e-124 449.9 282 83.7
BraA09t39303Z Brassica rapa HOM05D005950 ORTHO05D008673 1.4e-124 449.9 283 83.7
C05p26890 Brassica napus HOM05D005950 ORTHO05D008673 2.4e-124 449.1 283 83.7
A09p37910 Brassica napus HOM05D005950 ORTHO05D008673 5.5e-124 448.0 283 83.4
BcaB07g32425 Brassica carinata HOM05D005950 ORTHO05D008673 2.1e-123 446.0 277 84.5
Aa31sc45G70 Aethionema arabicum HOM05D005950 ORTHO05D008673 1.1e-121 440.3 280 82.5
THA.LOC104820536 Tarenaya hassleriana HOM05D005950 ORTHO05D008673 2.0e-110 402.9 279 76.7
Atru.chr12.1419 Acer truncatum HOM05D005950 ORTHO05D008673 3.8e-109 398.7 286 71.7
Thecc.02G192100 Theobroma cacao HOM05D005950 ORTHO05D008673 7.9e-107 391.0 293 69.3
COL.COLO4_36001 Corchorus olitorius HOM05D005950 ORTHO05D008673 6.3e-104 381.3 285 69.5
Duzib248G1270 Durio zibethinus HOM05D005950 ORTHO05D008673 1.5e-102 376.7 254 72.8
CiPaw.05G101200 Carya illinoinensis HOM05D005950 ORTHO05D008673 2.6e-102 375.9 297 66.3
QL03p049137 Quercus lobata HOM05D005950 ORTHO05D008673 1.0e-101 374.0 282 67.7
TWI36G0089 Tripterygium wilfordii HOM05D005950 ORTHO05D008673 2.2e-101 372.9 284 67.6
Haze_12503 Corylus avellana HOM05D005950 ORTHO05D008673 3.8e-101 372.1 297 67.0
Ciclev10005525m.g Citrus clementina HOM05D005950 ORTHO05D008673 1.1e-100 370.5 297 66.3
Gorai.002G021400 Gossypium raimondii HOM05D005950 ORTHO05D008673 4.2e-100 368.6 295 65.1
Eucgr.B03560 Eucalyptus grandis HOM05D005950 ORTHO05D008673 9.4e-100 367.5 281 70.1
Manes.08G101200 Manihot esculenta HOM05D005950 ORTHO05D008673 1.6e-99 366.7 283 68.2
Potri.001G100300 Populus trichocarpa HOM05D005950 ORTHO05D008673 2.7e-99 365.9 280 69.3
Gohir.A01G020600 Gossypium hirsutum HOM05D005950 ORTHO05D008673 1.8e-98 363.2 294 63.9
GSVIVG01001090001 Vitis vinifera HOM05D005950 ORTHO05D008673 6.7e-98 361.3 289 64.7
PGR102G2360 Punica granatum HOM05D005950 ORTHO05D008673 2.6e-97 359.4 240 74.2
TAR371G0811 Trochodendron aralioides HOM05D005950 ORTHO05D008673 4.4e-97 358.6 253 71.1
RhsimUnG0153300 Rhododendron simsii HOM05D005950 ORTHO05D008673 5.7e-97 358.2 305 63.3
RcHm_v2.0_Chr4g0428871 Rosa chinensis HOM05D005950 ORTHO05D008673 7.4e-97 357.8 280 68.6
Rhsim12G0072500 Rhododendron simsii HOM05D005950 ORTHO05D008673 9.7e-97 357.5 305 63.3
TAR629G3081 Trochodendron aralioides HOM05D005950 ORTHO05D008673 1.3e-96 357.1 293 64.5
Dinv03756 Davidia involucrata HOM05D005950 ORTHO05D008673 3.7e-96 355.5 276 65.9
MD13G1130900 Malus domestica HOM05D005950 ORTHO05D008673 6.3e-96 354.8 294 64.3
Cpa.g.sc182.2 Carica papaya HOM05D005950 ORTHO05D008673 1.4e-95 353.6 251 70.9
CSS0041196 Camellia sinensis var. sinensis HOM05D005950 ORTHO05D008673 3.1e-95 352.4 244 70.1
Sed0005763 Sechium edule HOM05D005950 ORTHO05D008673 3.1e-95 352.4 283 65.7
CSS0009236 Camellia sinensis var. sinensis HOM05D005950 ORTHO05D008673 4.1e-95 352.1 244 70.1
FAN12G2095 Fragaria x ananassa HOM05D005950 ORTHO05D008673 6.9e-95 351.3 280 67.9
FvH4_4g22640 Fragaria vesca HOM05D005950 ORTHO05D008673 9.1e-95 350.9 280 67.5
Lalb_Chr06g0164721 Lupinus albus HOM05D005950 ORTHO05D008673 1.5e-94 350.1 243 72.0
MELO3C022359.2 Cucumis melo HOM05D005950 ORTHO05D008673 2.0e-94 349.7 233 73.4
Hund27394 Selenicereus undatus HOM05D005950 ORTHO05D008673 2.6e-94 349.4 249 69.1
Nitab4.5_0006153g0020 Nicotiana tabacum HOM05D005950 ORTHO05D008673 3.4e-94 349.0 241 71.8
FAN07G2488 Fragaria x ananassa HOM05D005950 ORTHO05D008673 4.5e-94 348.6 282 67.7
FAN17G1731 Fragaria x ananassa HOM05D005950 ORTHO05D008673 4.5e-94 348.6 280 66.8
MBI10_g32324_MAGBIO Magnolia biondii HOM05D005950 ORTHO05D008673 7.7e-94 347.8 270 66.7
Sc19g0003090 Simmondsia chinensis HOM05D005950 ORTHO05D008673 1.3e-93 347.1 245 70.2
AUR62005715 Chenopodium quinoa HOM05D005950 ORTHO05D008673 1.7e-93 346.7 231 74.5
PGSC0003DMG400028387 Solanum tuberosum HOM05D005950 ORTHO05D008673 2.2e-93 346.3 225 75.6
Phvul.007G000300 Phaseolus vulgaris HOM05D005950 ORTHO05D008673 2.9e-93 345.9 247 70.4
Solyc05g012700.3 Solanum lycopersicum HOM05D005950 ORTHO05D008673 3.8e-93 345.5 282 62.8
Actinidia33998 Actinidia chinensis HOM05D005950 ORTHO05D008673 5.0e-93 345.1 252 70.2
CsaV3_6G007730 Cucumis sativus L. HOM05D005950 ORTHO05D008673 5.0e-93 345.1 285 64.6
Hma1.2p1_0660F.1_g197630 Hydrangea macrophylla HOM05D005950 ORTHO05D008673 8.5e-93 344.4 236 72.5
Sopen05g007530 Solanum pennellii HOM05D005950 ORTHO05D008673 8.5e-93 344.4 282 62.4
CAN.G624.24 Capsicum annuum HOM05D005950 ORTHO05D008673 1.1e-92 344.0 227 73.1
Cc11_g15000 Coffea canephora HOM05D005950 ORTHO05D008673 1.4e-92 343.6 234 73.9
Peaxi162Scf00023g00931 Petunia axillaris HOM05D005950 ORTHO05D008673 1.4e-92 343.6 238 72.3
Medtr1g099520 Medicago truncatula HOM05D005950 ORTHO05D008673 2.5e-92 342.8 272 66.2
Prupe.1G214800 Prunus persica HOM05D005950 ORTHO05D008673 2.5e-92 342.8 290 63.4
Aqoxy5G03108 Aquilegia oxysepala HOM05D005950 ORTHO05D008673 5.5e-92 341.7 273 64.8
LjContig00470g0001843 Lotus japonicus HOM05D005950 ORTHO05D008673 5.5e-92 341.7 249 67.5
Sabra01G0075200 Salix brachista HOM05D005950 ORTHO05D008673 5.5e-92 341.7 334 58.1
VMungo0720G2460 Vigna mungo HOM05D005950 ORTHO05D008673 5.5e-92 341.7 288 64.9
Ah.03g135560 Amaranthus hybridus HOM05D005950 ORTHO05D008673 7.2e-92 341.3 244 70.5
Nitab4.5_0000208g0380 Nicotiana tabacum HOM05D005950 ORTHO05D008673 7.2e-92 341.3 238 71.4
EL10Ac6g13611 Beta vulgaris HOM05D005950 ORTHO05D008673 1.6e-91 340.1 249 67.1
SalBow2G0445 Salvia bowleyana HOM05D005950 ORTHO05D008673 2.7e-91 339.3 249 69.9
Lsat_1_v5_gn_3_32320 Lactuca sativa HOM05D005950 ORTHO05D008673 4.7e-91 338.6 224 73.7
PSO478G4484 Papaver somniferum HOM05D005950 ORTHO05D008673 7.9e-91 337.8 264 64.0
TPR.G7754 Trifolium pratense HOM05D005950 ORTHO05D008673 7.9e-91 337.8 277 63.9
PSO017G6070 Papaver somniferum HOM05D005950 ORTHO05D008673 1.8e-90 336.7 235 69.8
Migut.K01055 Erythranthe guttata HOM05D005950 ORTHO05D008673 3.9e-90 335.5 275 66.2
DCAR_024633 Daucus carota HOM05D000512 ORTHO05D008673 6.7e-90 334.7 240 69.6
HanXRQChr06g0175111 Helianthus annuus HOM05D005950 ORTHO05D008673 2.0e-89 333.2 228 73.7
vmacro16072 Vaccinium macrocarpon HOM05D005950 ORTHO05D008673 2.6e-89 332.8 298 60.7
CANSAT01G2759 Cannabis sativa HOM05D005950 ORTHO05D008673 5.7e-89 331.6 264 65.9
Oeu027106.1 Olea europaea HOM05D005950 ORTHO05D008673 1.1e-87 327.4 223 72.6
MSTRG.8054 Avicennia marina HOM05D005950 ORTHO05D008673 1.8e-87 326.6 247 68.0
SGA_v2.0_scaffold157G37356 Striga asiatica HOM05D005950 ORTHO05D008673 4.1e-87 325.5 276 65.2
HPP92_007045 Vanilla planifolia HOM05D005950 ORTHO05D008673 7.0e-87 324.7 252 65.5
arahy.Tifrunner.gnm1.ann1.MTDN4F Arachis hypogaea HOM05D005950 ORTHO05D008673 1.2e-86 323.9 251 62.9
Os03g0850600 Oryza sativa ssp. japonica HOM05D005950 ORTHO05D008673 2.9e-85 319.3 236 66.9
ATR0582G132 Amborella trichopoda HOM05D005950 ORTHO05D008673 7.2e-84 314.7 224 65.6
Zm00001eb064540 Zea mays HOM05D005950 ORTHO05D008673 3.6e-83 312.4 227 67.8
CDE02G3863 Ceratophyllum demersum HOM05D005950 ORTHO05D008673 1.0e-82 310.8 218 68.8
Ca_10708_v3 Cicer arietinum L. HOM05D005950 ORTHO05D008673 8.8e-82 307.8 234 67.1
Psat6g195320 Pisum sativum HOM05D005950 ORTHO05D008673 3.7e-80 302.4 254 62.6
Glyma.20G249800 Glycine max HOM05D005950 ORTHO05D008673 1.1e-79 300.8 226 68.6
unitig_747.g21110 Utricularia gibba HOM05D005950 ORTHO05D008673 9.1e-79 297.7 266 60.5
Pp3c8_12800 Physcomitrium patens HOM05D005950 ORTHO05D008673 3.5e-78 295.8 245 60.8
Lj3A1077T57 Lonicera japonica HOM05D005950 ORTHO05D008673 2.2e-77 293.1 201 74.6
Mapoly0027s0093 Marchantia polymorpha HOM05D005950 ORTHO05D008673 5.0e-77 292.0 249 59.4
Duzib052G0358 Durio zibethinus HOM05D005950 ORTHO05D008673 8.5e-77 291.2 228 68.4
ClCG06G001700 Citrullus lanatus HOM05D005950 ORTHO05D008673 2.5e-76 289.7 275 57.5
SMO367G1143 Selaginella moellendorffii HOM05D005950 ORTHO05D008673 1.6e-75 287.0 253 57.7
AagrBONN_evm.TU.Sc2ySwM_344.2741 Anthoceros agrestis HOM05D005950 ORTHO05D008673 8.0e-75 284.6 243 59.3
SEGI_01129 Sequoiadendron giganteum HOM05D005950 ORTHO05D008673 4.4e-73 278.9 207 66.2
CBR_g3659 Chara braunii HOM05D005950 ORTHO05D008673 5.0e-69 265.4 237 57.0
Hma1.2p1_0660F.1_g197620 Hydrangea macrophylla HOM05D005950 ORTHO05D008673 2.5e-68 263.1 187 71.1
AUR62028840 Chenopodium quinoa HOM05D005950 ORTHO05D008673 9.5e-68 261.2 206 66.0
arahy.Tifrunner.gnm1.ann1.PXY63F Arachis hypogaea HOM05D005950 ORTHO05D008673 6.1e-67 258.5 251 54.6
Nn3g16271 Nelumbo nucifera HOM05D005950 ORTHO05D008673 2.5e-60 236.5 262 49.6
CDE06G2125 Ceratophyllum demersum HOM05D005950 ORTHO05D008673 1.6e-54 217.2 140 72.9
MCO02G210 Micromonas commoda HOM05D005950 ORTHO05D008673 3.3e-52 209.5 221 51.6
TWI18G1378 Tripterygium wilfordii HOM05D005950 ORTHO05D008673 1.0e-45 188.0 150 63.3
Cre04.g228450 Chlamydomonas reinhardtii HOM05D005950 ORTHO05D008673 9.5e-44 181.4 223 46.2
PRCOL_00003015 Prasinoderma coloniale HOM05D005950 ORTHO05D008673 1.7e-40 170.6 214 44.4
Gohir.D01G019100 Gossypium hirsutum HOM05D005950 ORTHO05D008673 6.0e-38 162.2 159 57.2
Peaxi162Scf00040g00101 Petunia axillaris HOM05D005950 ORTHO05D008673 1.6e-30 137.5 136 54.4
TPR.G36353 Trifolium pratense HOM05D005950 ORTHO05D008673 1.3e-29 134.4 86 74.4
AL1G56270 Arabidopsis lyrata HOM05D005950 ORTHO05D000283 1.7e-21 107.5 66 83.3
Zm00001eb422050 Zea mays HOM05D005950 ORTHO05D008673 5.1e-21 105.9 82 62.2
Zm00001eb141620 Zea mays HOM05D005950 ORTHO05D444810 4.3e-20 102.8 68 67.6
Peaxi162Scf00003g00713 Petunia axillaris HOM05D005950 ORTHO05D305722 4.0e-18 96.3 136 44.9
AL4G33820 Arabidopsis lyrata HOM05D005950 ORTHO05D080589 3.4e-17 93.2 83 60.2
MD16G1141000 Malus domestica HOM05D005950 ORTHO05D020170 4.5e-17 92.8 62 71.0
FAN25G3256 Fragaria x ananassa HOM05D005950 ORTHO05D203075 7.6e-17 92.0 89 61.8
FAN20G0916 Fragaria x ananassa HOM05D005950 ORTHO05D020170 1.3e-16 91.3 58 77.6
Zm00001eb187530 Zea mays HOM05D006345 ORTHO05D007428 1.7e-16 90.9 63 65.1
C05p26860 Brassica napus HOM05D005950 ORTHO05D020170 1.4e-15 87.8 56 75.0
Hma1.2p1_0660F.1_g197640 Hydrangea macrophylla HOM05D005950 ORTHO05D020170 1.2e-14 84.7 56 71.4
BolC5t31405H Brassica oleracea HOM05D005950 ORTHO05D020170 2.1e-14 84.0 58 70.7
Peaxi162Scf00059g01815 Petunia axillaris HOM05D005950 ORTHO05D306406 1.3e-13 81.3 170 36.5
A09p37930 Brassica napus HOM05D005950 ORTHO05D020170 5.1e-13 79.3 53 71.7
Peaxi162Scf00968g00313 Petunia axillaris HOM05D005950 ORTHO05D305879 4.3e-12 76.3 175 35.4
CDE06G1299 Ceratophyllum demersum HOM05D005950 ORTHO05D130736 5.6e-12 75.9 82 53.7
Glyma.10G298600 Glycine max HOM05D005950 ORTHO05D020170 5.8e-09 65.9 47 66.0
Peaxi162Scf00141g00098 Petunia axillaris HOM05D005950 ORTHO05D306108 4.9e-08 62.8 43 67.4


User provided reference genes

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